Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

61060262 .. 61061008

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAACCACAAAACCAGCATCCAACCGAGGATGGAAGTAACAAAGCAGTCGGGAGTAGTGCTAACATGCTTCGCAGGAAGAGCTGTACTAGGTGGATTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGATTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGACAAGATTGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAAAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCATTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATTTCAGCTGGAGGGGAAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTCTCACTGTTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTCGTGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

248

Amino Acids

27.91

Weight (kDa)

7.72

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	1.1e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	735
AciI	CCGC	3 cut(s)	405, 450, 742
AclWI	GGATC	5 cut(s)	191, 366, 385, 453, 466
AfaI	GTAC	2 cut(s)	88, 206
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	223, 495, 590
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	579
AleI	CACNNNNGTG	1 cut(s)	672
AluBI	AGCT	6 cut(s)	84, 133, 196, 503, 697, 722
AluI	AGCT	6 cut(s)	84, 133, 196, 503, 697, 722
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	5 cut(s)	191, 366, 385, 453, 466
Ama87I	CYCGRG	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	156, 279
AsuHPI	GGTGA	3 cut(s)	338, 569, 629
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	156, 279
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	259, 699
BbsI	GAAGAC	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	699
BccI	CCATC	3 cut(s)	26, 430, 647
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	3 cut(s)	90, 483, 516
BfmI	CTRYAG	2 cut(s)	105, 165
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	742
BlpI	GCTNAGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	2 cut(s)	156, 279
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	156, 279
BmiI	GGNNCC	4 cut(s)	6, 158, 460, 740
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	647
BpmI	CTGGAG	2 cut(s)	176, 525
Bpu1102I	GCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	110, 713
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	19, 37, 295
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	582
BseSI	GKGCMC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	3 cut(s)	259, 303, 699
Bsp13I	TCCGGA	1 cut(s)	735
Bsp143I	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
Bsp1720I	GCTNAGC	1 cut(s)	698
BspACI	CCGC	3 cut(s)	405, 450, 742
BspCNI	CTCAG	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	735
BspLI	GGNNCC	4 cut(s)	6, 158, 460, 740
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	5 cut(s)	191, 366, 385, 453, 466
BspQI	GCTCTTC	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	3 cut(s)	603, 617, 671
Bst6I	CTCTTC	3 cut(s)	74, 269, 470
BstDEI	CTNAG	1 cut(s)	698
BstF5I	GGATG	3 cut(s)	19, 37, 295
BstKTI	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 404, 708
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	2 cut(s)	105, 165
BstSLI	GKGCMC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	3 cut(s)	183, 377, 458
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	3 cut(s)	183, 377, 458
BtsCI	GGATG	3 cut(s)	19, 37, 295
BtsIMutI	CAGTG	1 cut(s)	599
BveI	ACCTGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	156, 279
Csp6I	GTAC	2 cut(s)	87, 205
CviQI	GTAC	2 cut(s)	87, 205
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	7 cut(s)	111, 185, 313, 360, 379, 460, 576
DpnII	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
Eam1104I	CTCTTC	3 cut(s)	74, 269, 470
EarI	CTCTTC	3 cut(s)	74, 269, 470
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	2 cut(s)	259, 699
Eco47I	GGWCC	2 cut(s)	156, 279
Eco53kI	GAGCTC	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	579
EcoT38I	GRGCYC	2 cut(s)	259, 699
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	3 cut(s)	6, 44, 302
FriOI	GRGCYC	2 cut(s)	259, 699
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	3 cut(s)	90, 483, 516
GluI	GCNGC	1 cut(s)	742
GsuI	CTGGAG	2 cut(s)	176, 525
HapII	CCGG	1 cut(s)	736
HinfI	GANTC	3 cut(s)	97, 120, 175
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	3 cut(s)	338, 569, 629
Hpy166II	GTNNAC	2 cut(s)	247, 282
Hpy188I	TCNGA	3 cut(s)	180, 289, 652
Hpy188III	TCNNGA	5 cut(s)	52, 223, 244, 260, 736
Hpy8I	GTNNAC	2 cut(s)	247, 282
HpyCH4III	ACNGT	3 cut(s)	603, 617, 671
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	307, 386, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 404, 708
HpyF3I	CTNAG	1 cut(s)	698
HpySE526I	ACGT	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	735
Kzo9I	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	130, 738
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	3 cut(s)	90, 483, 516
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	38, 337, 665
MalI	GATC	7 cut(s)	111, 185, 313, 360, 379, 460, 576
MboI	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
MboII	GAAGA	7 cut(s)	91, 286, 372, 393, 487, 584, 652
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	3 cut(s)	183, 377, 458
MhlI	GDGCHC	3 cut(s)	259, 303, 699
MluCI	AATT	2 cut(s)	343, 495
MmeI	TCCRAC	1 cut(s)	47
MroI	TCCGGA	1 cut(s)	735
MseI	TTAA	2 cut(s)	369, 426
MslI	CAYNNNNRTG	2 cut(s)	467, 672
MspA1I	CMGCKG	4 cut(s)	196, 407, 503, 744
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	81, 404, 708
NdeII	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
NlaIV	GGNNCC	4 cut(s)	6, 158, 460, 740
NmuCI	GTSAC	1 cut(s)	665
NspI	RCATGY	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	97, 120, 175
PkrI	GCNGC	1 cut(s)	743
PpuMI	RGGWCCY	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	4 cut(s)	6, 158, 460, 740
PspPI	GGNCC	2 cut(s)	156, 279
PspPPI	RGGWCCY	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	183, 377, 458
PvuII	CAGCTG	2 cut(s)	196, 503
RsaI	GTAC	2 cut(s)	88, 206
RsaNI	GTAC	2 cut(s)	87, 205
RseI	CAYNNNNRTG	2 cut(s)	467, 672
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	369, 426
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	7 cut(s)	109, 183, 311, 358, 377, 458, 574
Sau96I	GGNCC	2 cut(s)	156, 279
ScrFI	CCNGG	1 cut(s)	581
SduI	GDGCHC	3 cut(s)	259, 303, 699
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	105, 165
SinI	GGWCC	2 cut(s)	156, 279
SmiMI	CAYNNNNRTG	2 cut(s)	467, 672
SmlI	CTYRAG	2 cut(s)	125, 692
SmoI	CTYRAG	2 cut(s)	125, 692
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	2 cut(s)	343, 495
SsiI	CCGC	3 cut(s)	405, 450, 742
SspMI	CTAG	3 cut(s)	90, 483, 516
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	579
TaaI	ACNGT	3 cut(s)	603, 617, 671
TaiI	ACGT	1 cut(s)	231
TasI	AATT	2 cut(s)	343, 495
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	3 cut(s)	97, 120, 175
Tru1I	TTAA	2 cut(s)	369, 426
Tru9I	TTAA	2 cut(s)	369, 426
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	5 cut(s)	284, 479, 544, 551, 653
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	156, 279
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	3 cut(s)	90, 483, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.