Rroxscaffold_1G00020080

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
24473609 .. 24474623
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020080.1

Sequence Viewer

Length: 735 bp
ATGGAACCACAAAACCGGCATCCAACCGAGGATGGAGGAAATAACAAAGCAGCCGAGAGTAGTGATAGCATGCGAACTAGGTGGATTCCCACTACGGACCATATAAGAATCCTCAAGGATCTTTTCTACAACAAGGGATTTAGGGCTCGGGAAAGGCGAGAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGGAAAGATCGTGGCTTGTTGGTGATGACAATGTTACCAATTGGGAACCCGAGGACCGAATATTAACTTCGGATCTTCTCGCATCGTTCGCTTCTTCTTTAGCCGGACATGAAGACTACTTCCGAGGGAGGTGGAGGCTACGCAACCATTCCGGTGGATGGGGCGGCAACAACGATGGCTCTCGCATTTCCCTTGAGCTCGGCCTCAACTCCTATGGCTCGACTACTTCCGAGGGAGGTGGCCGCTACGCCTATCACTCCGTGGATGGGGCGGCTACCATGATAGCTCTCGCATTTCCCTCGAGCTCGGCCTCAACTCCTATGGCTCGACTACTTCCGAAGGAGGTGGCCGCTACGCCTATCACTCCGGTGGATGGGGCGGCTACCACGATAGCTCTCGCATTTCCCTTGAGCTTAGCCTCAACTCCTACGGTTCGATCGGCGAAGGTGTTTTTTCGGAGCGAGAAGAGACAAAGCTGCTTAGCGAAGAAATGGTTATGGGCCTCAAAAACAGGCCTTCATGAATGGGCTTCGCAAGTGTAG

Protein Analysis

244

Amino Acids

26.98

Weight (kDa)

9.26

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 357, 436, 464, 543, 572
AclWI GGATC 2 cut(s) 126, 273
AcoI YGGCCR 2 cut(s) 433, 540
AdeI CACNNNGTG 1 cut(s) 454
AfiI CCNNNNNNNGG 3 cut(s) 351, 459, 566
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 6 cut(s) 391, 479, 498, 587, 606, 669
AluI AGCT 6 cut(s) 391, 479, 498, 587, 606, 669
Alw21I GWGCWC 2 cut(s) 393, 500
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 2 cut(s) 126, 273
Ama87I CYCGRG 3 cut(s) 147, 242, 493
AoxI GGCC 6 cut(s) 394, 433, 501, 540, 693, 706
ApeKI GCWGC 2 cut(s) 50, 669
AspS9I GGNCC 4 cut(s) 97, 168, 247, 693
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 3 cut(s) 147, 242, 493
AvaII GGWCC 3 cut(s) 97, 168, 247
BaeGI GKGCMC 1 cut(s) 192
BanII GRGCYC 3 cut(s) 148, 393, 500
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 393, 500
BbvI GCAGC 2 cut(s) 62, 656
BccI CCATC 5 cut(s) 26, 345, 362, 452, 560
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 78
BisI GCNGC 7 cut(s) 51, 358, 436, 465, 543, 573, 670
BlpI GCTNAGC 2 cut(s) 607, 673
BlsI GCNGC 7 cut(s) 52, 359, 437, 466, 544, 574, 671
Bme18I GGWCC 3 cut(s) 97, 168, 247
BmeT110I CYCGRG 3 cut(s) 147, 242, 493
BmgT120I GGNCC 4 cut(s) 97, 168, 247, 693
BmiI GGNNCC 2 cut(s) 6, 240
BmsI GCATC 2 cut(s) 28, 284
BpiI GAAGAC 1 cut(s) 312
Bpu1102I GCTNAGC 2 cut(s) 607, 673
BpuEI CTTGAG 3 cut(s) 98, 407, 622
BsaJI CCNNGG 6 cut(s) 27, 192, 243, 316, 423, 453
BsaWI WCCGGW 2 cut(s) 344, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 459, 566
Bse118I RCCGGY 1 cut(s) 15
BseDI CCNNGG 6 cut(s) 27, 192, 243, 316, 423, 453
BseGI GGATG 6 cut(s) 19, 37, 184, 356, 463, 571
BseLI CCNNNNNNNGG 3 cut(s) 351, 459, 566
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 2 cut(s) 62, 656
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 6 cut(s) 396, 435, 503, 542, 695, 708
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 393, 500
BsiHKCI CYCGRG 3 cut(s) 147, 242, 493
BsiSI CCGG 4 cut(s) 16, 297, 345, 560
BslI CCNNNNNNNGG 3 cut(s) 351, 459, 566
BsmAI GTCTC 1 cut(s) 655
BsnI GGCC 6 cut(s) 396, 435, 503, 542, 695, 708
BsoBI CYCGRG 3 cut(s) 147, 242, 493
Bsp1286I GDGCHC 4 cut(s) 148, 192, 393, 500
Bsp143I GATC 4 cut(s) 118, 200, 265, 629
Bsp1720I GCTNAGC 2 cut(s) 607, 673
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 5 cut(s) 357, 436, 464, 543, 572
BspANI GGCC 6 cut(s) 396, 435, 503, 542, 695, 708
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 6, 240
BspPI GGATC 2 cut(s) 126, 273
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 6 cut(s) 27, 192, 243, 316, 423, 453
BssMI GATC 4 cut(s) 118, 200, 265, 629
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 2 cut(s) 158, 653
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 607, 673
BstDSI CCRYGG 2 cut(s) 192, 453
BstF5I GGATG 6 cut(s) 19, 37, 184, 356, 463, 571
BstKTI GATC 4 cut(s) 121, 203, 268, 632
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 4 cut(s) 118, 200, 265, 629
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 62, 656
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 118, 265
BstXI CCANNNNNNTGG 1 cut(s) 347
BstYI RGATCY 2 cut(s) 118, 265
BsuRI GGCC 6 cut(s) 396, 435, 503, 542, 695, 708
BtgI CCRYGG 2 cut(s) 192, 453
BtsCI GGATG 6 cut(s) 19, 37, 184, 356, 463, 571
Cac8I GCNNGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 712
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 4 cut(s) 97, 168, 247, 693
CviAII CATG 6 cut(s) 70, 185, 193, 302, 472, 713
DdeI CTNAG 2 cut(s) 607, 673
DpnI GATC 4 cut(s) 120, 202, 267, 631
DpnII GATC 4 cut(s) 118, 200, 265, 629
DraIII CACNNNGTG 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 433, 540
Eam1104I CTCTTC 2 cut(s) 158, 653
EarI CTCTTC 2 cut(s) 158, 653
Ecl136II GAGCTC 2 cut(s) 391, 498
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 708
Eco24I GRGCYC 3 cut(s) 148, 393, 500
Eco47I GGWCC 3 cut(s) 97, 168, 247
Eco53kI GAGCTC 2 cut(s) 391, 498
Eco88I CYCGRG 3 cut(s) 147, 242, 493
EcoICRI GAGCTC 2 cut(s) 391, 498
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 3 cut(s) 148, 393, 500
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 73, 188, 196, 305, 475, 716
FatI CATG 6 cut(s) 69, 184, 192, 301, 471, 712
Fnu4HI GCNGC 7 cut(s) 51, 358, 436, 465, 543, 573, 670
FokI GGATG 6 cut(s) 6, 44, 191, 363, 470, 578
FriOI GRGCYC 3 cut(s) 148, 393, 500
Fsp4HI GCNGC 7 cut(s) 51, 358, 436, 465, 543, 573, 670
FspBI CTAG 1 cut(s) 78
GluI GCNGC 7 cut(s) 51, 358, 436, 465, 543, 573, 670
HaeIII GGCC 6 cut(s) 396, 435, 503, 542, 695, 708
HapII CCGG 4 cut(s) 16, 297, 345, 560
Hin1II CATG 6 cut(s) 73, 188, 196, 305, 475, 716
HinfI GANTC 2 cut(s) 85, 108
HpaII CCGG 4 cut(s) 16, 297, 345, 560
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 6 cut(s) 178, 265, 317, 424, 531, 651
Hpy188III TCNNGA 2 cut(s) 149, 713
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 526, 631, 719
HpyCH4III ACNGT 1 cut(s) 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 607, 673
Hsp92II CATG 6 cut(s) 73, 188, 196, 305, 475, 716
Kzo9I GATC 4 cut(s) 118, 200, 265, 629
LmnI GCTCC 1 cut(s) 651
LpnPI CCDG 5 cut(s) 29, 310, 358, 573, 690
Lsp1109I GCAGC 2 cut(s) 62, 656
LweI GCATC 2 cut(s) 28, 284
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 120, 202, 267, 631
MboI GATC 4 cut(s) 118, 200, 265, 629
MboII GAAGA 6 cut(s) 175, 260, 279, 317, 670, 691
MfeI CAATTG 1 cut(s) 232
MflI RGATCY 2 cut(s) 118, 265
MhlI GDGCHC 4 cut(s) 148, 192, 393, 500
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 47
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 2 cut(s) 345, 560
MspI CCGG 4 cut(s) 16, 297, 345, 560
MunI CAATTG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 192
NdeII GATC 4 cut(s) 118, 200, 265, 629
NlaIII CATG 6 cut(s) 73, 188, 196, 305, 475, 716
NlaIV GGNNCC 2 cut(s) 6, 240
NmeAIII GCCGAG 3 cut(s) 79, 372, 479
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 560
PaeI GCATGC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 493
PagI TCATGA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PfeI GAWTC 2 cut(s) 85, 108
PkrI GCNGC 7 cut(s) 52, 359, 437, 466, 544, 574, 671
Ple19I CGATCG 1 cut(s) 632
Psp124BI GAGCTC 2 cut(s) 393, 500
PspN4I GGNNCC 2 cut(s) 6, 240
PspPI GGNCC 4 cut(s) 97, 168, 247, 693
PspXI VCTCGAGB 1 cut(s) 493
PsuI RGATCY 2 cut(s) 118, 265
PvuI CGATCG 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 345, 560
SacI GAGCTC 2 cut(s) 393, 500
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 7 cut(s) 51, 358, 436, 465, 543, 573, 670
Sau3AI GATC 4 cut(s) 118, 200, 265, 629
Sau96I GGNCC 4 cut(s) 97, 168, 247, 693
SduI GDGCHC 4 cut(s) 148, 192, 393, 500
SfaNI GCATC 2 cut(s) 28, 284
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 3 cut(s) 97, 168, 247
SlaI CTCGAG 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 345, 560
SmlI CTYRAG 4 cut(s) 113, 386, 493, 601
SmoI CTYRAG 4 cut(s) 113, 386, 493, 601
SphI GCATGC 1 cut(s) 73
Sse9I AATT 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 708
SsiI CCGC 5 cut(s) 357, 436, 464, 543, 572
SspI AATATT 1 cut(s) 255
SspMI CTAG 1 cut(s) 78
SstI GAGCTC 2 cut(s) 393, 500
StuI AGGCCT 1 cut(s) 708
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 625
TaqI TCGA 4 cut(s) 413, 494, 520, 628
TaqII GACCGA 1 cut(s) 264
TasI AATT 1 cut(s) 232
TauI GCSGC 5 cut(s) 360, 438, 467, 545, 575
TfiI GAWTC 2 cut(s) 85, 108
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 2 cut(s) 50, 669
TspDTI ATGAA 4 cut(s) 173, 318, 701, 729
TspGWI ACGGA 2 cut(s) 110, 442
VpaK11BI GGWCC 3 cut(s) 97, 168, 247
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.