Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 357, 436, 464, 543, 572 |
| AclWI | GGATC | 2 cut(s) | 126, 273 |
| AcoI | YGGCCR | 2 cut(s) | 433, 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 454 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 351, 459, 566 |
| AleI | CACNNNNGTG | 1 cut(s) | 560 |
| AluBI | AGCT | 6 cut(s) | 391, 479, 498, 587, 606, 669 |
| AluI | AGCT | 6 cut(s) | 391, 479, 498, 587, 606, 669 |
| Alw21I | GWGCWC | 2 cut(s) | 393, 500 |
| Alw26I | GTCTC | 1 cut(s) | 655 |
| AlwI | GGATC | 2 cut(s) | 126, 273 |
| Ama87I | CYCGRG | 3 cut(s) | 147, 242, 493 |
| AoxI | GGCC | 6 cut(s) | 394, 433, 501, 540, 693, 706 |
| ApeKI | GCWGC | 2 cut(s) | 50, 669 |
| AspS9I | GGNCC | 4 cut(s) | 97, 168, 247, 693 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AvaI | CYCGRG | 3 cut(s) | 147, 242, 493 |
| AvaII | GGWCC | 3 cut(s) | 97, 168, 247 |
| BaeGI | GKGCMC | 1 cut(s) | 192 |
| BanII | GRGCYC | 3 cut(s) | 148, 393, 500 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 2 cut(s) | 393, 500 |
| BbvI | GCAGC | 2 cut(s) | 62, 656 |
| BccI | CCATC | 5 cut(s) | 26, 345, 362, 452, 560 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 474, 508 |
| BcoDI | GTCTC | 1 cut(s) | 655 |
| BfaI | CTAG | 1 cut(s) | 78 |
| BisI | GCNGC | 7 cut(s) | 51, 358, 436, 465, 543, 573, 670 |
| BlpI | GCTNAGC | 2 cut(s) | 607, 673 |
| BlsI | GCNGC | 7 cut(s) | 52, 359, 437, 466, 544, 574, 671 |
| Bme18I | GGWCC | 3 cut(s) | 97, 168, 247 |
| BmeT110I | CYCGRG | 3 cut(s) | 147, 242, 493 |
| BmgT120I | GGNCC | 4 cut(s) | 97, 168, 247, 693 |
| BmiI | GGNNCC | 2 cut(s) | 6, 240 |
| BmsI | GCATC | 2 cut(s) | 28, 284 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 607, 673 |
| BpuEI | CTTGAG | 3 cut(s) | 98, 407, 622 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 192, 243, 316, 423, 453 |
| BsaWI | WCCGGW | 2 cut(s) | 344, 559 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 351, 459, 566 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| BseDI | CCNNGG | 6 cut(s) | 27, 192, 243, 316, 423, 453 |
| BseGI | GGATG | 6 cut(s) | 19, 37, 184, 356, 463, 571 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 351, 459, 566 |
| BseSI | GKGCMC | 1 cut(s) | 192 |
| BseXI | GCAGC | 2 cut(s) | 62, 656 |
| Bsh1285I | CGRYCG | 1 cut(s) | 632 |
| BshFI | GGCC | 6 cut(s) | 396, 435, 503, 542, 695, 708 |
| BsiEI | CGRYCG | 1 cut(s) | 632 |
| BsiHKAI | GWGCWC | 2 cut(s) | 393, 500 |
| BsiHKCI | CYCGRG | 3 cut(s) | 147, 242, 493 |
| BsiSI | CCGG | 4 cut(s) | 16, 297, 345, 560 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 351, 459, 566 |
| BsmAI | GTCTC | 1 cut(s) | 655 |
| BsnI | GGCC | 6 cut(s) | 396, 435, 503, 542, 695, 708 |
| BsoBI | CYCGRG | 3 cut(s) | 147, 242, 493 |
| Bsp1286I | GDGCHC | 4 cut(s) | 148, 192, 393, 500 |
| Bsp143I | GATC | 4 cut(s) | 118, 200, 265, 629 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 607, 673 |
| Bsp19I | CCATGG | 1 cut(s) | 192 |
| BspACI | CCGC | 5 cut(s) | 357, 436, 464, 543, 572 |
| BspANI | GGCC | 6 cut(s) | 396, 435, 503, 542, 695, 708 |
| BspHI | TCATGA | 1 cut(s) | 712 |
| BspLI | GGNNCC | 2 cut(s) | 6, 240 |
| BspPI | GGATC | 2 cut(s) | 126, 273 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 6 cut(s) | 27, 192, 243, 316, 423, 453 |
| BssMI | GATC | 4 cut(s) | 118, 200, 265, 629 |
| BssT1I | CCWWGG | 1 cut(s) | 192 |
| Bst4CI | ACNGT | 1 cut(s) | 625 |
| Bst6I | CTCTTC | 2 cut(s) | 158, 653 |
| BstC8I | GCNNGC | 1 cut(s) | 71 |
| BstDEI | CTNAG | 2 cut(s) | 607, 673 |
| BstDSI | CCRYGG | 2 cut(s) | 192, 453 |
| BstF5I | GGATG | 6 cut(s) | 19, 37, 184, 356, 463, 571 |
| BstKTI | GATC | 4 cut(s) | 121, 203, 268, 632 |
| BstMAI | GTCTC | 1 cut(s) | 655 |
| BstMBI | GATC | 4 cut(s) | 118, 200, 265, 629 |
| BstMCI | CGRYCG | 1 cut(s) | 632 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 281 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSLI | GKGCMC | 1 cut(s) | 192 |
| BstV1I | GCAGC | 2 cut(s) | 62, 656 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BstX2I | RGATCY | 2 cut(s) | 118, 265 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 347 |
| BstYI | RGATCY | 2 cut(s) | 118, 265 |
| BsuRI | GGCC | 6 cut(s) | 396, 435, 503, 542, 695, 708 |
| BtgI | CCRYGG | 2 cut(s) | 192, 453 |
| BtsCI | GGATG | 6 cut(s) | 19, 37, 184, 356, 463, 571 |
| Cac8I | GCNNGC | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 712 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 4 cut(s) | 97, 168, 247, 693 |
| CviAII | CATG | 6 cut(s) | 70, 185, 193, 302, 472, 713 |
| DdeI | CTNAG | 2 cut(s) | 607, 673 |
| DpnI | GATC | 4 cut(s) | 120, 202, 267, 631 |
| DpnII | GATC | 4 cut(s) | 118, 200, 265, 629 |
| DraIII | CACNNNGTG | 1 cut(s) | 454 |
| EaeI | YGGCCR | 2 cut(s) | 433, 540 |
| Eam1104I | CTCTTC | 2 cut(s) | 158, 653 |
| EarI | CTCTTC | 2 cut(s) | 158, 653 |
| Ecl136II | GAGCTC | 2 cut(s) | 391, 498 |
| Eco130I | CCWWGG | 1 cut(s) | 192 |
| Eco147I | AGGCCT | 1 cut(s) | 708 |
| Eco24I | GRGCYC | 3 cut(s) | 148, 393, 500 |
| Eco47I | GGWCC | 3 cut(s) | 97, 168, 247 |
| Eco53kI | GAGCTC | 2 cut(s) | 391, 498 |
| Eco88I | CYCGRG | 3 cut(s) | 147, 242, 493 |
| EcoICRI | GAGCTC | 2 cut(s) | 391, 498 |
| EcoT14I | CCWWGG | 1 cut(s) | 192 |
| EcoT38I | GRGCYC | 3 cut(s) | 148, 393, 500 |
| ErhI | CCWWGG | 1 cut(s) | 192 |
| FaeI | CATG | 6 cut(s) | 73, 188, 196, 305, 475, 716 |
| FatI | CATG | 6 cut(s) | 69, 184, 192, 301, 471, 712 |
| Fnu4HI | GCNGC | 7 cut(s) | 51, 358, 436, 465, 543, 573, 670 |
| FokI | GGATG | 6 cut(s) | 6, 44, 191, 363, 470, 578 |
| FriOI | GRGCYC | 3 cut(s) | 148, 393, 500 |
| Fsp4HI | GCNGC | 7 cut(s) | 51, 358, 436, 465, 543, 573, 670 |
| FspBI | CTAG | 1 cut(s) | 78 |
| GluI | GCNGC | 7 cut(s) | 51, 358, 436, 465, 543, 573, 670 |
| HaeIII | GGCC | 6 cut(s) | 396, 435, 503, 542, 695, 708 |
| HapII | CCGG | 4 cut(s) | 16, 297, 345, 560 |
| Hin1II | CATG | 6 cut(s) | 73, 188, 196, 305, 475, 716 |
| HinfI | GANTC | 2 cut(s) | 85, 108 |
| HpaII | CCGG | 4 cut(s) | 16, 297, 345, 560 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 171 |
| Hpy188I | TCNGA | 6 cut(s) | 178, 265, 317, 424, 531, 651 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 713 |
| Hpy8I | GTNNAC | 1 cut(s) | 171 |
| HpyAV | CCTTC | 3 cut(s) | 526, 631, 719 |
| HpyCH4III | ACNGT | 1 cut(s) | 625 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 281 |
| HpyF3I | CTNAG | 2 cut(s) | 607, 673 |
| Hsp92II | CATG | 6 cut(s) | 73, 188, 196, 305, 475, 716 |
| Kzo9I | GATC | 4 cut(s) | 118, 200, 265, 629 |
| LmnI | GCTCC | 1 cut(s) | 651 |
| LpnPI | CCDG | 5 cut(s) | 29, 310, 358, 573, 690 |
| Lsp1109I | GCAGC | 2 cut(s) | 62, 656 |
| LweI | GCATC | 2 cut(s) | 28, 284 |
| MaeI | CTAG | 1 cut(s) | 78 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 4 cut(s) | 120, 202, 267, 631 |
| MboI | GATC | 4 cut(s) | 118, 200, 265, 629 |
| MboII | GAAGA | 6 cut(s) | 175, 260, 279, 317, 670, 691 |
| MfeI | CAATTG | 1 cut(s) | 232 |
| MflI | RGATCY | 2 cut(s) | 118, 265 |
| MhlI | GDGCHC | 4 cut(s) | 148, 192, 393, 500 |
| MluCI | AATT | 1 cut(s) | 232 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MseI | TTAA | 1 cut(s) | 257 |
| MslI | CAYNNNNRTG | 2 cut(s) | 345, 560 |
| MspI | CCGG | 4 cut(s) | 16, 297, 345, 560 |
| MunI | CAATTG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 281 |
| NcoI | CCATGG | 1 cut(s) | 192 |
| NdeII | GATC | 4 cut(s) | 118, 200, 265, 629 |
| NlaIII | CATG | 6 cut(s) | 73, 188, 196, 305, 475, 716 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 240 |
| NmeAIII | GCCGAG | 3 cut(s) | 79, 372, 479 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 560 |
| PaeI | GCATGC | 1 cut(s) | 73 |
| PaeR7I | CTCGAG | 1 cut(s) | 493 |
| PagI | TCATGA | 1 cut(s) | 712 |
| PceI | AGGCCT | 1 cut(s) | 708 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 85, 108 |
| PkrI | GCNGC | 7 cut(s) | 52, 359, 437, 466, 544, 574, 671 |
| Ple19I | CGATCG | 1 cut(s) | 632 |
| Psp124BI | GAGCTC | 2 cut(s) | 393, 500 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 240 |
| PspPI | GGNCC | 4 cut(s) | 97, 168, 247, 693 |
| PspXI | VCTCGAGB | 1 cut(s) | 493 |
| PsuI | RGATCY | 2 cut(s) | 118, 265 |
| PvuI | CGATCG | 1 cut(s) | 632 |
| RseI | CAYNNNNRTG | 2 cut(s) | 345, 560 |
| SacI | GAGCTC | 2 cut(s) | 393, 500 |
| SaqAI | TTAA | 1 cut(s) | 257 |
| SatI | GCNGC | 7 cut(s) | 51, 358, 436, 465, 543, 573, 670 |
| Sau3AI | GATC | 4 cut(s) | 118, 200, 265, 629 |
| Sau96I | GGNCC | 4 cut(s) | 97, 168, 247, 693 |
| SduI | GDGCHC | 4 cut(s) | 148, 192, 393, 500 |
| SfaNI | GCATC | 2 cut(s) | 28, 284 |
| Sfr274I | CTCGAG | 1 cut(s) | 493 |
| SinI | GGWCC | 3 cut(s) | 97, 168, 247 |
| SlaI | CTCGAG | 1 cut(s) | 493 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 345, 560 |
| SmlI | CTYRAG | 4 cut(s) | 113, 386, 493, 601 |
| SmoI | CTYRAG | 4 cut(s) | 113, 386, 493, 601 |
| SphI | GCATGC | 1 cut(s) | 73 |
| Sse9I | AATT | 1 cut(s) | 232 |
| SseBI | AGGCCT | 1 cut(s) | 708 |
| SsiI | CCGC | 5 cut(s) | 357, 436, 464, 543, 572 |
| SspI | AATATT | 1 cut(s) | 255 |
| SspMI | CTAG | 1 cut(s) | 78 |
| SstI | GAGCTC | 2 cut(s) | 393, 500 |
| StuI | AGGCCT | 1 cut(s) | 708 |
| StyI | CCWWGG | 1 cut(s) | 192 |
| TaaI | ACNGT | 1 cut(s) | 625 |
| TaqI | TCGA | 4 cut(s) | 413, 494, 520, 628 |
| TaqII | GACCGA | 1 cut(s) | 264 |
| TasI | AATT | 1 cut(s) | 232 |
| TauI | GCSGC | 5 cut(s) | 360, 438, 467, 545, 575 |
| TfiI | GAWTC | 2 cut(s) | 85, 108 |
| Tru1I | TTAA | 1 cut(s) | 257 |
| Tru9I | TTAA | 1 cut(s) | 257 |
| TseI | GCWGC | 2 cut(s) | 50, 669 |
| TspDTI | ATGAA | 4 cut(s) | 173, 318, 701, 729 |
| TspGWI | ACGGA | 2 cut(s) | 110, 442 |
| VpaK11BI | GGWCC | 3 cut(s) | 97, 168, 247 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XhoI | CTCGAG | 1 cut(s) | 493 |
| XspI | CTAG | 1 cut(s) | 78 |