Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

130508 .. 131149

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000365.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggaaccacaaacccagcaaccaaccgaggatggaggaagcaacaaagcagtcgggagcagtgctaacatgcattgcaggcggagcagtactaggtgggctcctactgcagatcagataagaatcctcaaggatttttatgacaatggaggtaagaacccaactccagagcagattcagaggatcactctccagctgaaacggtacggactggtcgagaacaagaacgtcttttattggttccagaaccacaagtctagggagaggcagaagaagaagttaacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtggatccattaatctcaattttgggtcaactagttcaactggtgttgatggatccattaatctcaattttgggtcaacttgttctgctggtgtaggtggatccattatggaacaacgaggagaagatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactactttcgagggaggtagtggctatggctactactccggtggctgggacggcaacaacggtggttctcgcatttctcttgagctcagcctcaactcctccggatctgctgacgtggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

213

Amino Acids

23.19

Weight (kDa)

6.52

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	8 cut(s)	191, 324, 337, 372, 385, 420, 433, 631
AfaI	GTAC	2 cut(s)	91, 206
AfiI	CCNNNNNNNGG	2 cut(s)	491, 564
AgsI	TTSAA	2 cut(s)	363, 467
AhlI	ACTAGT	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	196, 604
AluI	AGCT	2 cut(s)	196, 604
Alw21I	GWGCWC	1 cut(s)	606
AlwI	GGATC	8 cut(s)	191, 324, 337, 372, 385, 420, 433, 631
Aor13HI	TCCGGA	1 cut(s)	620
AseI	ATTAAT	2 cut(s)	336, 384
Asp700I	GAANNNNTTC	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	446, 506
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	3 cut(s)	329, 377, 425
BanII	GRGCYC	2 cut(s)	103, 606
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	606
BccI	CCATC	2 cut(s)	26, 368
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	458
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	3 cut(s)	93, 258, 357
BfmI	CTRYAG	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	605
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	634
BmiI	GGNNCC	6 cut(s)	6, 102, 242, 331, 379, 427
BmrFI	CCNGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	150, 176
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	113, 620
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	557, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 564
Bse1I	ACTGG	2 cut(s)	216, 370
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 295
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	491, 564
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	2 cut(s)	216, 370
BseRI	GAGGAG	2 cut(s)	459, 607
BseSI	GKGCMC	1 cut(s)	303
BseYI	CCCAGC	2 cut(s)	15, 564
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	558, 621
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	491, 564
BsmFI	GGGAC	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	103, 303, 606
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	618
BspEI	TCCGGA	1 cut(s)	620
BspLI	GGNNCC	6 cut(s)	6, 102, 242, 331, 379, 427
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	8 cut(s)	191, 324, 337, 372, 385, 420, 433, 631
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	216, 370
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	204, 581
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	605, 639
BstF5I	GGATG	2 cut(s)	37, 295
BstKTI	GATC	8 cut(s)	115, 186, 314, 332, 380, 428, 454, 626
BstMBI	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 84, 107, 570, 635
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	4 cut(s)	329, 377, 425, 623
BstYI	RGATCY	4 cut(s)	329, 377, 425, 623
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	37, 295
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	90, 205
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	6 cut(s)	70, 296, 304, 487, 491, 514
CviJI	RGCY	9 cut(s)	101, 196, 319, 543, 549, 564, 604, 609, 638
CviKI_1	RGCY	9 cut(s)	101, 196, 319, 543, 549, 564, 604, 609, 638
CviQI	GTAC	2 cut(s)	90, 205
DdeI	CTNAG	2 cut(s)	605, 639
DpnI	GATC	8 cut(s)	114, 185, 313, 331, 379, 427, 453, 625
DpnII	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	103, 606
Eco53kI	GAGCTC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	456
EcoT22I	ATGCAT	2 cut(s)	75, 492
EcoT38I	GRGCYC	2 cut(s)	103, 606
FaeI	CATG	6 cut(s)	73, 299, 307, 490, 494, 517
FaiI	YATR	9 cut(s)	71, 141, 297, 305, 434, 488, 492, 515, 546
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	6 cut(s)	69, 295, 303, 486, 490, 513
FokI	GGATG	2 cut(s)	44, 302
FriOI	GRGCYC	2 cut(s)	103, 606
FspBI	CTAG	3 cut(s)	93, 258, 357
GsaI	CCCAGC	2 cut(s)	19, 568
GsuI	CTGGAG	2 cut(s)	150, 176
HapII	CCGG	2 cut(s)	558, 621
Hin1II	CATG	6 cut(s)	73, 299, 307, 490, 494, 517
HincII	GTYRAC	3 cut(s)	282, 354, 402
HindII	GTYRAC	3 cut(s)	282, 354, 402
HinfI	GANTC	2 cut(s)	123, 175
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	2 cut(s)	558, 621
HphI	GGTGA	2 cut(s)	446, 506
Hpy166II	GTNNAC	3 cut(s)	282, 354, 402
Hpy188I	TCNGA	3 cut(s)	117, 180, 289
Hpy188III	TCNNGA	6 cut(s)	55, 167, 217, 244, 599, 621
Hpy8I	GTNNAC	3 cut(s)	282, 354, 402
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	2 cut(s)	204, 581
HpyCH4IV	ACGT	2 cut(s)	228, 633
HpyCH4V	TGCA	5 cut(s)	73, 78, 110, 307, 490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 84, 107, 570, 635
HpyF3I	CTNAG	2 cut(s)	605, 639
HpySE526I	ACGT	2 cut(s)	228, 633
Hsp92II	CATG	6 cut(s)	73, 299, 307, 490, 494, 517
Kpn2I	TCCGGA	1 cut(s)	620
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
LmnI	GCTCC	3 cut(s)	57, 84, 106
MaeI	CTAG	3 cut(s)	93, 258, 357
MaeII	ACGT	2 cut(s)	228, 633
MalI	GATC	8 cut(s)	114, 185, 313, 331, 379, 427, 453, 625
MboI	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
MboII	GAAGA	4 cut(s)	283, 286, 461, 529
MflI	RGATCY	4 cut(s)	329, 377, 425, 623
MhlI	GDGCHC	3 cut(s)	103, 303, 606
MluCI	AATT	2 cut(s)	343, 391
Mph1103I	ATGCAT	2 cut(s)	75, 492
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	281, 336, 384
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	2 cut(s)	558, 621
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	5 cut(s)	79, 84, 107, 570, 635
NdeII	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
NlaIII	CATG	6 cut(s)	73, 299, 307, 490, 494, 517
NlaIV	GGNNCC	6 cut(s)	6, 102, 242, 331, 379, 427
NsiI	ATGCAT	2 cut(s)	75, 492
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	123, 175
PshBI	ATTAAT	2 cut(s)	336, 384
Psp124BI	GAGCTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	2 cut(s)	15, 564
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	6 cut(s)	6, 102, 242, 331, 379, 427
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	4 cut(s)	329, 377, 425, 623
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	91, 206
RsaNI	GTAC	2 cut(s)	90, 205
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	281, 336, 384
Sau3AI	GATC	8 cut(s)	112, 183, 311, 329, 377, 425, 451, 623
ScaI	AGTACT	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	103, 303, 606
SetI	ASST	8 cut(s)	98, 154, 198, 231, 424, 538, 606, 636
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	128, 599
SmoI	CTYRAG	2 cut(s)	128, 599
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	2 cut(s)	343, 391
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	3 cut(s)	93, 258, 357
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	204, 581
TaiI	ACGT	2 cut(s)	231, 636
TaqI	TCGA	2 cut(s)	216, 528
TasI	AATT	2 cut(s)	343, 391
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	123, 175
Tru1I	TTAA	3 cut(s)	281, 336, 384
Tru9I	TTAA	3 cut(s)	281, 336, 384
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	284, 530
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	67
VspI	ATTAAT	2 cut(s)	336, 384
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	3 cut(s)	93, 258, 357
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	2 cut(s)	75, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.