Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000284.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

39996 .. 40568

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000284.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggaaccacaaacccaggaaccaaccgaggatggaggaagcaacaaagcaaccgggagtagtgctaacatgctgcgggggcggaacaggtggaatccaactacagatcagataagaatcctcaaggagcttttctacaataagggagttaggtccccaactatagagcagattcaaaggatctgtctccagctgaaatggtacggcaagatcgagttcaagaacgtctatttttggttcgtgaaccaaagggctcaggagaagcggaagaagaggtccacttcggatgttcatgtgcccatgcaaagatcaaggcttgttggtgattccattaatctcaattctgggtcaactagttcggctggtgttggtggatccatcatggaacaacgaggagaagatcaccaggagattaaaacccttccactatttcccatgcacggtgaggacatctttggcaacatgaagactacttccgacggaggtggtggtcacggtggtggctcttacatttcccttgagctcagcctttcctgtgagggcaaagctggaaaaagtttccggagccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

190

Amino Acids

21.19

Weight (kDa)

9.54

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	4 cut(s)	76, 82, 265, 568
AclWI	GGATC	3 cut(s)	188, 369, 382
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	176, 220
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	15, 405
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	130, 193, 523, 548
AluI	AGCT	4 cut(s)	130, 193, 523, 548
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	188, 369, 382
Aor13HI	TCCGGA	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	335, 395, 455
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	256, 525
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	26, 386
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	17, 407
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	102, 162
BisI	GCNGC	2 cut(s)	74, 568
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	2 cut(s)	75, 569
Bme1390I	CCNGG	3 cut(s)	17, 55, 407
Bme18I	GGWCC	2 cut(s)	153, 276
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	5 cut(s)	6, 21, 155, 376, 566
BmrFI	CCNGG	3 cut(s)	17, 55, 407
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	107, 539
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	15, 27
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	17, 407
BseDI	CCNNGG	2 cut(s)	15, 27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	269, 538
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	54, 562
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 525
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	4 cut(s)	76, 82, 265, 568
BspCNI	CTCAG	2 cut(s)	268, 537
BspEI	TCCGGA	1 cut(s)	561
BspLI	GGNNCC	5 cut(s)	6, 21, 155, 376, 566
BspPI	GGATC	3 cut(s)	188, 369, 382
BssECI	CCNNGG	2 cut(s)	15, 27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
Bst2UI	CCWGG	2 cut(s)	17, 407
Bst4CI	ACNGT	2 cut(s)	443, 497
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	255, 524
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 377, 403
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	17, 407
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	15, 53, 405
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	2 cut(s)	180, 374
BstYI	RGATCY	2 cut(s)	180, 374
BtsCI	GGATG	2 cut(s)	37, 292
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	6 cut(s)	70, 293, 301, 382, 436, 463
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	255, 524
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 376, 402
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	2 cut(s)	256, 525
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	15, 405
EcoT38I	GRGCYC	2 cut(s)	256, 525
FaeI	CATG	6 cut(s)	73, 296, 304, 385, 439, 466
FaiI	YATR	7 cut(s)	71, 164, 294, 302, 383, 437, 464
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	69, 292, 300, 381, 435, 462
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	74, 568
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 525
Fsp4HI	GCNGC	2 cut(s)	74, 568
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	74, 568
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 562
Hin1II	CATG	6 cut(s)	73, 296, 304, 385, 439, 466
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	4 cut(s)	94, 117, 172, 326
HpaII	CCGG	2 cut(s)	54, 562
HphI	GGTGA	3 cut(s)	335, 395, 455
Hpy166II	GTNNAC	3 cut(s)	244, 279, 351
Hpy188I	TCNGA	3 cut(s)	111, 286, 478
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 562
Hpy8I	GTNNAC	3 cut(s)	244, 279, 351
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	443, 497
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	304, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	255, 524
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	73, 296, 304, 385, 439, 466
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
LmnI	GCTCC	2 cut(s)	127, 564
Lsp1109I	GCAGC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	6 cut(s)	108, 182, 212, 310, 376, 402
MboI	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
MboII	GAAGA	4 cut(s)	280, 283, 410, 478
MflI	RGATCY	2 cut(s)	180, 374
MhlI	GDGCHC	3 cut(s)	256, 300, 525
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	122, 501
MnlI	CCTC	8 cut(s)	22, 29, 131, 267, 386, 439, 476, 532
MroI	TCCGGA	1 cut(s)	561
MseI	TTAA	2 cut(s)	333, 414
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	2 cut(s)	193, 570
MspI	CCGG	2 cut(s)	54, 562
MspR9I	CCNGG	3 cut(s)	17, 55, 407
MvaI	CCWGG	2 cut(s)	17, 407
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
NlaIII	CATG	6 cut(s)	73, 296, 304, 385, 439, 466
NlaIV	GGNNCC	5 cut(s)	6, 21, 155, 376, 566
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	94, 117, 172, 326
PkrI	GCNGC	2 cut(s)	75, 569
PpuMI	RGGWCCY	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	15, 405
PspGI	CCWGG	2 cut(s)	15, 405
PspN4I	GGNNCC	5 cut(s)	6, 21, 155, 376, 566
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 374
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	333, 414
SatI	GCNGC	2 cut(s)	74, 568
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 374, 400
Sau96I	GGNCC	2 cut(s)	153, 276
ScrFI	CCNGG	3 cut(s)	17, 55, 407
SduI	GDGCHC	3 cut(s)	256, 300, 525
SetI	ASST	9 cut(s)	92, 132, 155, 195, 228, 278, 487, 525, 550
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	122, 518
SmoI	CTYRAG	2 cut(s)	122, 518
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	76, 82, 265, 568
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	3 cut(s)	15, 53, 405
TaaI	ACNGT	2 cut(s)	443, 497
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	94, 117, 172, 326
Tru1I	TTAA	2 cut(s)	333, 414
Tru9I	TTAA	2 cut(s)	333, 414
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	281, 479
TspGWI	ACGGA	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	153, 276
VspI	ATTAAT	1 cut(s)	333
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.