Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

9705003 .. 9705533

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAACCACAAAACCGGCATCCAACCGAGAATGGTGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTCGCAGGGAGAACCGTACTAGGTGGGTTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTATGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGACATCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGAGCTTGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGATTAAAACCCTTCCACTGTTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGACGGAGGTGGTGATCACGGTGGTGGCTCTTACATTTCTCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

176

Amino Acids

20.06

Weight (kDa)

9.54

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.5e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	519
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	3 cut(s)	194, 327, 340
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	363
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	5 cut(s)	136, 199, 322, 481, 506
AluI	AGCT	5 cut(s)	136, 199, 322, 481, 506
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	194, 327, 340
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	519
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	353, 413, 458
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	262, 483
BbsI	GAAGAC	2 cut(s)	284, 431
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	2 cut(s)	108, 168
BisI	GCNGC	2 cut(s)	51, 526
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	2 cut(s)	52, 527
Bme1390I	CCNGG	2 cut(s)	55, 365
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	5 cut(s)	6, 102, 161, 334, 524
BmrFI	CCNGG	2 cut(s)	55, 365
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	284, 431
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	113, 497
BpuMI	CCSGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	3 cut(s)	19, 281, 298
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	16, 54, 520
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 483
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	495
BspEI	TCCGGA	1 cut(s)	519
BspLI	GGNNCC	5 cut(s)	6, 102, 161, 334, 524
BspPI	GGATC	3 cut(s)	194, 327, 340
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssMI	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	4 cut(s)	89, 387, 401, 455
BstDEI	CTNAG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	19, 281, 298
BstKTI	GATC	7 cut(s)	115, 189, 219, 317, 335, 361, 451
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	492
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 363
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	284, 431
BstX2I	RGATCY	2 cut(s)	186, 332
BstYI	RGATCY	2 cut(s)	186, 332
BtsCI	GGATG	3 cut(s)	19, 281, 298
BtsIMutI	CAGTG	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	6 cut(s)	70, 299, 307, 340, 394, 421
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	7 cut(s)	114, 188, 218, 316, 334, 360, 450
DpnII	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	262, 483
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	262, 483
FaeI	CATG	6 cut(s)	73, 302, 310, 343, 397, 424
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	69, 298, 306, 339, 393, 420
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	51, 526
FokI	GGATG	3 cut(s)	6, 268, 305
FriOI	GRGCYC	2 cut(s)	262, 483
Fsp4HI	GCNGC	2 cut(s)	51, 526
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	51, 526
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	3 cut(s)	16, 54, 520
Hin1II	CATG	6 cut(s)	73, 302, 310, 343, 397, 424
HinfI	GANTC	2 cut(s)	123, 178
HpaII	CCGG	3 cut(s)	16, 54, 520
HphI	GGTGA	3 cut(s)	353, 413, 458
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	183, 292, 319, 436
Hpy188III	TCNNGA	5 cut(s)	226, 247, 263, 476, 520
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	4 cut(s)	89, 387, 401, 455
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	310, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	492
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	73, 302, 310, 343, 397, 424
Kpn2I	TCCGGA	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
LmnI	GCTCC	2 cut(s)	133, 522
LpnPI	CCDG	8 cut(s)	29, 64, 67, 209, 350, 377, 492, 505
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	7 cut(s)	114, 188, 218, 316, 334, 360, 450
MboI	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
MboII	GAAGA	4 cut(s)	286, 289, 368, 436
MflI	RGATCY	2 cut(s)	186, 332
MhlI	GDGCHC	3 cut(s)	262, 306, 483
MmeI	TCCRAC	2 cut(s)	47, 459
MnlI	CCTC	6 cut(s)	137, 177, 344, 397, 434, 490
MroI	TCCGGA	1 cut(s)	519
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	199, 528
MspI	CCGG	3 cut(s)	16, 54, 520
MspR9I	CCNGG	2 cut(s)	55, 365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	492
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
NlaIII	CATG	6 cut(s)	73, 302, 310, 343, 397, 424
NlaIV	GGNNCC	5 cut(s)	6, 102, 161, 334, 524
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	2 cut(s)	52, 527
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	5 cut(s)	6, 102, 161, 334, 524
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	2 cut(s)	186, 332
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	51, 526
Sau3AI	GATC	7 cut(s)	112, 186, 216, 314, 332, 358, 448
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	55, 365
SduI	GDGCHC	3 cut(s)	262, 306, 483
SetI	ASST	9 cut(s)	98, 138, 161, 201, 234, 324, 445, 483, 508
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	128, 476
SmoI	CTYRAG	2 cut(s)	128, 476
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	53, 363
TaaI	ACNGT	4 cut(s)	89, 387, 401, 455
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	287, 437
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.