Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

22448865 .. 22449371

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTTTGTAGGCGGAGCAAGTGGACTCCCACTACAGATCAGATAAGAATCCTTAAGGAGCTTTTTTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTCAGAGGATCTATCTCCAGCTGAAATGGTACAGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGACGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTCAATTTTGGGTCAACTAGTTCTGCTGATGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGGTTAAAACCCTTCCATTGTTTCCCATACACAGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGACGGAGGTGGTGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAATAAAAATTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

168

Amino Acids

18.98

Weight (kDa)

9.52

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	4 - 66	2e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	91
AciI	CCGC	2 cut(s)	13, 502
AclWI	GGATC	5 cut(s)	119, 252, 265, 300, 313
AcsI	RAATTY	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	429
AluBI	AGCT	4 cut(s)	61, 124, 454, 479
AluI	AGCT	4 cut(s)	61, 124, 454, 479
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	5 cut(s)	119, 252, 265, 300, 313
Ama87I	CYCGRG	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	231
BamHI	GGATCC	2 cut(s)	257, 305
BanII	GRGCYC	2 cut(s)	187, 456
BbsI	GAAGAC	2 cut(s)	209, 404
Bbv12I	GWGCWC	1 cut(s)	456
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	33, 93
BfrI	CTTAAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	502
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	4 cut(s)	86, 259, 307, 500
BmrFI	CCNGG	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	209, 404
BpmI	CTGGAG	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	3 cut(s)	187, 231, 456
Bsp143I	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
Bsp1720I	GCTNAGC	1 cut(s)	455
BspACI	CCGC	2 cut(s)	13, 502
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	4 cut(s)	86, 259, 307, 500
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	5 cut(s)	119, 252, 265, 300, 313
BspTI	CTTAAG	1 cut(s)	53
BssMI	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
BssNI	GRCGYC	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	94, 374, 428
BstACI	GRCGYC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	7 cut(s)	40, 114, 144, 242, 260, 308, 334
BstMBI	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 465
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	33, 93
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	2 cut(s)	209, 404
BstX2I	RGATCY	3 cut(s)	111, 257, 305
BstYI	RGATCY	3 cut(s)	111, 257, 305
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	4 cut(s)	224, 232, 313, 394
CviJI	RGCY	9 cut(s)	61, 124, 185, 247, 435, 454, 459, 479, 501
CviKI_1	RGCY	9 cut(s)	61, 124, 185, 247, 435, 454, 459, 479, 501
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	7 cut(s)	39, 113, 143, 241, 259, 307, 333
DpnII	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	2 cut(s)	187, 456
Eco47I	GGWCC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	336
EcoT38I	GRGCYC	2 cut(s)	187, 456
FaeI	CATG	4 cut(s)	227, 235, 316, 397
FaiI	YATR	5 cut(s)	225, 233, 314, 368, 395
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	223, 231, 312, 393
Fnu4HI	GCNGC	1 cut(s)	502
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	187, 456
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	4 cut(s)	227, 235, 316, 397
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	25, 48
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	4 cut(s)	24, 175, 210, 282
Hpy188I	TCNGA	4 cut(s)	42, 108, 217, 409
Hpy188III	TCNNGA	4 cut(s)	151, 172, 188, 496
Hpy8I	GTNNAC	4 cut(s)	24, 175, 210, 282
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	3 cut(s)	94, 374, 428
HpyCH4IV	ACGT	2 cut(s)	156, 206
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 465
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	2 cut(s)	156, 206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	4 cut(s)	227, 235, 316, 397
Kzo9I	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
LmnI	GCTCC	3 cut(s)	15, 58, 498
LpnPI	CCDG	8 cut(s)	86, 134, 228, 323, 350, 465, 478, 481
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	156, 206
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	7 cut(s)	39, 113, 143, 241, 259, 307, 333
MboI	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
MboII	GAAGA	4 cut(s)	211, 214, 341, 409
MflI	RGATCY	3 cut(s)	111, 257, 305
MhlI	GDGCHC	3 cut(s)	187, 231, 456
MluCI	AATT	2 cut(s)	271, 490
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	102, 317, 334, 370, 407, 463
MseI	TTAA	3 cut(s)	54, 264, 345
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	124, 504
MspCI	CTTAAG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	10, 465
NdeII	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
NlaIII	CATG	4 cut(s)	227, 235, 316, 397
NlaIV	GGNNCC	4 cut(s)	86, 259, 307, 500
NmuCI	GTSAC	1 cut(s)	422
OliI	CACNNNNGTG	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	503
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	4 cut(s)	86, 259, 307, 500
PspPI	GGNCC	1 cut(s)	84
PspPPI	RGGWCCY	1 cut(s)	84
PsrI	GAACNNNNNNTAC	2 cut(s)	87, 119
PsuI	RGATCY	3 cut(s)	111, 257, 305
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	54, 264, 345
SatI	GCNGC	1 cut(s)	502
Sau3AI	GATC	7 cut(s)	37, 111, 141, 239, 257, 305, 331
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	3 cut(s)	187, 231, 456
SfcI	CTRYAG	2 cut(s)	33, 93
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	53, 449
SmoI	CTYRAG	2 cut(s)	53, 449
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	2 cut(s)	271, 490
SsiI	CCGC	2 cut(s)	13, 502
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	94, 374, 428
TaiI	ACGT	2 cut(s)	159, 209
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	271, 490
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	54, 264, 345
Tru9I	TTAA	3 cut(s)	54, 264, 345
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	212, 410
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	84
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	490
XspI	CTAG	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.