Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004085.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

3750 .. 4274

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004085.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggaaccacaaacccagcaaccaaccgaggatggaggaagcaacaaatcaaccgggagtagtgctaacatgctttgtaggcgaagcaggtggactcccactacagatcagataagaatccttaaggcgcttttctacaataagggagttaggtccccaactgtagagcaggttcagaggatctatctccagctgaaatggtacggcaagatcgagttcaagaacgtctatttttggttcgtgaaccaaagggctcgggagaagcagaagaagacgtccacttcagatgttcatgtgcccatgcaaagatcagagcttgttggtggatccatcatggaacaacgaggagaagatcaccaggagattaaaacccttgcactgtttcccatgcacggtgaggacatctttggcaacatgaagactacttccgatggaggtggtggtcacggtggtggctctcacatttcccttgagctcagcctttcctgtgagggcaaagctggaaaaagtttcctgagccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

174

Amino Acids

19.56

Weight (kDa)

9.42

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
AatII	GACGTC	1 cut(s)	278
Acc36I	ACCTGC	2 cut(s)	78, 160
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	3 cut(s)	188, 321, 334
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	4 cut(s)	193, 316, 475, 500
AluI	AGCT	4 cut(s)	193, 316, 475, 500
Alw21I	GWGCWC	1 cut(s)	477
AlwI	GGATC	3 cut(s)	188, 321, 334
Ama87I	CYCGRG	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	347, 407
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	256, 477
BbsI	GAAGAC	2 cut(s)	278, 425
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	3 cut(s)	26, 338, 425
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfoI	RGCGCY	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	55, 359
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 328
BmrFI	CCNGG	2 cut(s)	55, 359
BpiI	GAAGAC	2 cut(s)	278, 425
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	490, 506
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 477
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	520
BspCNI	CTCAG	2 cut(s)	489, 507
BspLI	GGNNCC	3 cut(s)	6, 155, 328
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	3 cut(s)	188, 321, 334
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
BssNI	GRCGYC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	4 cut(s)	163, 381, 395, 449
BstACI	GRCGYC	1 cut(s)	275
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	476, 515
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 329, 355
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 357
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	2 cut(s)	278, 425
BstX2I	RGATCY	2 cut(s)	180, 326
BstYI	RGATCY	2 cut(s)	180, 326
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	2 cut(s)	78, 160
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	6 cut(s)	70, 293, 301, 334, 388, 415
CviJI	RGCY	8 cut(s)	193, 254, 316, 456, 475, 480, 500, 519
CviKI_1	RGCY	8 cut(s)	193, 254, 316, 456, 475, 480, 500, 519
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	476, 515
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 328, 354
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
Ecl136II	GAGCTC	1 cut(s)	475
Eco24I	GRGCYC	2 cut(s)	256, 477
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	256, 477
FaeI	CATG	6 cut(s)	73, 296, 304, 337, 391, 418
FaiI	YATR	6 cut(s)	71, 294, 302, 335, 389, 416
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	69, 292, 300, 333, 387, 414
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	256, 477
Fsp4HI	GCNGC	1 cut(s)	520
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	520
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	131
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	73, 296, 304, 337, 391, 418
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	347, 407
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	5 cut(s)	111, 177, 286, 313, 430
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 514
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyCH4III	ACNGT	4 cut(s)	163, 381, 395, 449
HpyCH4IV	ACGT	2 cut(s)	225, 275
HpyCH4V	TGCA	3 cut(s)	304, 377, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	476, 515
HpySE526I	ACGT	2 cut(s)	225, 275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	6 cut(s)	73, 296, 304, 337, 391, 418
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 344, 371, 486, 499
MaeII	ACGT	2 cut(s)	225, 275
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	6 cut(s)	108, 182, 212, 310, 328, 354
MboI	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
MboII	GAAGA	4 cut(s)	280, 283, 362, 430
MflI	RGATCY	2 cut(s)	180, 326
MhlI	GDGCHC	3 cut(s)	256, 300, 477
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	22, 29, 171, 338, 391, 428, 484
MseI	TTAA	2 cut(s)	123, 366
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	193, 522
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	55, 359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
NlaIII	CATG	6 cut(s)	73, 296, 304, 337, 391, 418
NlaIV	GGNNCC	3 cut(s)	6, 155, 328
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	6, 155, 328
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PsuI	RGATCY	2 cut(s)	180, 326
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	123, 366
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 326, 352
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	55, 359
SduI	GDGCHC	3 cut(s)	256, 300, 477
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	122, 470
SmoI	CTYRAG	2 cut(s)	122, 470
SsiI	CCGC	1 cut(s)	520
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	53, 357
TaaI	ACNGT	4 cut(s)	163, 381, 395, 449
TaiI	ACGT	2 cut(s)	228, 278
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	123, 366
Tru9I	TTAA	2 cut(s)	123, 366
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	281, 431
TspRI	CASTG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.