Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 254 |
| AccB1I | GGYRCC | 1 cut(s) | 254 |
| AccI | GTMKAC | 1 cut(s) | 171 |
| AciI | CCGC | 3 cut(s) | 82, 498, 568 |
| AclWI | GGATC | 2 cut(s) | 301, 382 |
| AcuI | CTGAAG | 1 cut(s) | 303 |
| AfaI | GTAC | 2 cut(s) | 91, 256 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 492 |
| AgsI | TTSAA | 1 cut(s) | 395 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| AluBI | AGCT | 5 cut(s) | 136, 323, 471, 477, 532 |
| AluI | AGCT | 5 cut(s) | 136, 323, 471, 477, 532 |
| Alw21I | GWGCWC | 1 cut(s) | 534 |
| AlwI | GGATC | 2 cut(s) | 301, 382 |
| ApeKI | GCWGC | 1 cut(s) | 468 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 194, 399 |
| Asp718I | GGTACC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| AvaII | GGWCC | 1 cut(s) | 159 |
| BaeGI | GKGCMC | 1 cut(s) | 219 |
| BanI | GGYRCC | 1 cut(s) | 254 |
| BanII | GRGCYC | 2 cut(s) | 103, 534 |
| BbsI | GAAGAC | 1 cut(s) | 452 |
| Bbv12I | GWGCWC | 1 cut(s) | 534 |
| BbvI | GCAGC | 1 cut(s) | 480 |
| BccI | CCATC | 3 cut(s) | 26, 346, 486 |
| BceAI | ACGGC | 1 cut(s) | 565 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BfmI | CTRYAG | 2 cut(s) | 168, 472 |
| BisI | GCNGC | 2 cut(s) | 469, 499 |
| BlpI | GCTNAGC | 1 cut(s) | 533 |
| BlsI | GCNGC | 2 cut(s) | 470, 500 |
| Bme1390I | CCNGG | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 4 cut(s) | 6, 102, 161, 256 |
| BmrFI | CCNGG | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 452 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 533 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 548 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| BsaWI | WCCGGW | 1 cut(s) | 485 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 492 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseGI | GGATG | 3 cut(s) | 37, 211, 497 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 492 |
| BseMII | CTCAG | 3 cut(s) | 18, 261, 547 |
| BseSI | GKGCMC | 1 cut(s) | 219 |
| BseXI | GCAGC | 1 cut(s) | 480 |
| BshNI | GGYRCC | 1 cut(s) | 254 |
| BsiHKAI | GWGCWC | 1 cut(s) | 534 |
| BsiSI | CCGG | 1 cut(s) | 486 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 492 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| Bsp1286I | GDGCHC | 3 cut(s) | 103, 219, 534 |
| Bsp143I | GATC | 4 cut(s) | 112, 227, 293, 374 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 533 |
| BspACI | CCGC | 3 cut(s) | 82, 498, 568 |
| BspCNI | CTCAG | 3 cut(s) | 19, 262, 546 |
| BspLI | GGNNCC | 4 cut(s) | 6, 102, 161, 256 |
| BspPI | GGATC | 2 cut(s) | 301, 382 |
| BspT107I | GGYRCC | 1 cut(s) | 254 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssMI | GATC | 4 cut(s) | 112, 227, 293, 374 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 3 cut(s) | 169, 422, 509 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 3 cut(s) | 27, 270, 533 |
| BstF5I | GGATG | 3 cut(s) | 37, 211, 497 |
| BstKTI | GATC | 4 cut(s) | 115, 230, 296, 377 |
| BstMBI | GATC | 4 cut(s) | 112, 227, 293, 374 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 320, 474 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 92 |
| BstSFI | CTRYAG | 2 cut(s) | 168, 472 |
| BstSLI | GKGCMC | 1 cut(s) | 219 |
| BstV1I | GCAGC | 1 cut(s) | 480 |
| BstV2I | GAAGAC | 1 cut(s) | 452 |
| BstX2I | RGATCY | 2 cut(s) | 293, 374 |
| BstYI | RGATCY | 2 cut(s) | 293, 374 |
| BtsCI | GGATG | 3 cut(s) | 37, 211, 497 |
| BtsIMutI | CAGTG | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 2 cut(s) | 90, 255 |
| CviAII | CATG | 4 cut(s) | 70, 212, 220, 385 |
| CviQI | GTAC | 2 cut(s) | 90, 255 |
| DdeI | CTNAG | 3 cut(s) | 27, 270, 533 |
| DpnI | GATC | 4 cut(s) | 114, 229, 295, 376 |
| DpnII | GATC | 4 cut(s) | 112, 227, 293, 374 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 532 |
| Eco24I | GRGCYC | 2 cut(s) | 103, 534 |
| Eco47I | GGWCC | 1 cut(s) | 159 |
| Eco53kI | GAGCTC | 1 cut(s) | 532 |
| Eco57I | CTGAAG | 1 cut(s) | 303 |
| EcoICRI | GAGCTC | 1 cut(s) | 532 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| EcoT38I | GRGCYC | 2 cut(s) | 103, 534 |
| FaeI | CATG | 4 cut(s) | 73, 215, 223, 388 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 4 cut(s) | 69, 211, 219, 384 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 2 cut(s) | 469, 499 |
| FokI | GGATG | 3 cut(s) | 44, 218, 504 |
| FriOI | GRGCYC | 2 cut(s) | 103, 534 |
| Fsp4HI | GCNGC | 2 cut(s) | 469, 499 |
| GluI | GCNGC | 2 cut(s) | 469, 499 |
| HapII | CCGG | 1 cut(s) | 486 |
| Hin1II | CATG | 4 cut(s) | 73, 215, 223, 388 |
| HinfI | GANTC | 2 cut(s) | 123, 274 |
| HpaII | CCGG | 1 cut(s) | 486 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 2 cut(s) | 172, 198 |
| Hpy188I | TCNGA | 3 cut(s) | 117, 205, 457 |
| Hpy8I | GTNNAC | 2 cut(s) | 172, 198 |
| HpyAV | CCTTC | 1 cut(s) | 410 |
| HpyCH4III | ACNGT | 3 cut(s) | 169, 422, 509 |
| HpyCH4V | TGCA | 2 cut(s) | 223, 418 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 320, 474 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 270, 533 |
| Hsp92II | CATG | 4 cut(s) | 73, 215, 223, 388 |
| KpnI | GGTACC | 1 cut(s) | 258 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 4 cut(s) | 112, 227, 293, 374 |
| LmnI | GCTCC | 3 cut(s) | 84, 106, 133 |
| LpnPI | CCDG | 8 cut(s) | 64, 79, 106, 188, 216, 282, 309, 499 |
| Lsp1109I | GCAGC | 1 cut(s) | 480 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeIII | GTNAC | 1 cut(s) | 41 |
| MalI | GATC | 4 cut(s) | 114, 229, 295, 376 |
| MboI | GATC | 4 cut(s) | 112, 227, 293, 374 |
| MboII | GAAGA | 6 cut(s) | 196, 199, 202, 288, 309, 457 |
| MfeI | CAATTG | 1 cut(s) | 259 |
| MflI | RGATCY | 2 cut(s) | 293, 374 |
| MhlI | GDGCHC | 3 cut(s) | 103, 219, 534 |
| MluCI | AATT | 1 cut(s) | 259 |
| MnlI | CCTC | 9 cut(s) | 22, 115, 137, 142, 186, 418, 451, 455, 548 |
| MroXI | GAANNNNTTC | 2 cut(s) | 194, 399 |
| MseI | TTAA | 2 cut(s) | 285, 342 |
| MspA1I | CMGCKG | 1 cut(s) | 323 |
| MspI | CCGG | 1 cut(s) | 486 |
| MspR9I | CCNGG | 1 cut(s) | 94 |
| MunI | CAATTG | 1 cut(s) | 259 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 79, 84, 320, 474 |
| NdeII | GATC | 4 cut(s) | 112, 227, 293, 374 |
| NlaIII | CATG | 4 cut(s) | 73, 215, 223, 388 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 102, 161, 256 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PdmI | GAANNNNTTC | 2 cut(s) | 194, 399 |
| PfeI | GAWTC | 2 cut(s) | 123, 274 |
| PkrI | GCNGC | 2 cut(s) | 470, 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp124BI | GAGCTC | 1 cut(s) | 534 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 102, 161, 256 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| PsuI | RGATCY | 2 cut(s) | 293, 374 |
| PvuII | CAGCTG | 1 cut(s) | 323 |
| RsaI | GTAC | 2 cut(s) | 91, 256 |
| RsaNI | GTAC | 2 cut(s) | 90, 255 |
| SacI | GAGCTC | 1 cut(s) | 534 |
| SaqAI | TTAA | 2 cut(s) | 285, 342 |
| SatI | GCNGC | 2 cut(s) | 469, 499 |
| Sau3AI | GATC | 4 cut(s) | 112, 227, 293, 374 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| ScrFI | CCNGG | 1 cut(s) | 94 |
| SduI | GDGCHC | 3 cut(s) | 103, 219, 534 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfcI | CTRYAG | 2 cut(s) | 168, 472 |
| SinI | GGWCC | 1 cut(s) | 159 |
| SmlI | CTYRAG | 2 cut(s) | 128, 527 |
| SmoI | CTYRAG | 2 cut(s) | 128, 527 |
| Sse9I | AATT | 1 cut(s) | 259 |
| SsiI | CCGC | 3 cut(s) | 82, 498, 568 |
| SstI | GAGCTC | 1 cut(s) | 534 |
| StyD4I | CCNGG | 1 cut(s) | 92 |
| TaaI | ACNGT | 3 cut(s) | 169, 422, 509 |
| TaqI | TCGA | 1 cut(s) | 554 |
| TasI | AATT | 1 cut(s) | 259 |
| TauI | GCSGC | 1 cut(s) | 501 |
| TfiI | GAWTC | 2 cut(s) | 123, 274 |
| Tru1I | TTAA | 2 cut(s) | 285, 342 |
| Tru9I | TTAA | 2 cut(s) | 285, 342 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseI | GCWGC | 1 cut(s) | 468 |
| TspDTI | ATGAA | 2 cut(s) | 200, 395 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 159 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XmnI | GAANNNNTTC | 2 cut(s) | 194, 399 |