Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 723 |
| AciI | CCGC | 2 cut(s) | 267, 552 |
| AclWI | GGATC | 4 cut(s) | 506, 519, 526, 539 |
| AcsI | RAATTY | 1 cut(s) | 976 |
| AdeI | CACNNNGTG | 1 cut(s) | 953 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 877, 1034 |
| AjnI | CCWGG | 3 cut(s) | 53, 366, 889 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 173, 205, 1016, 1048 |
| AluBI | AGCT | 8 cut(s) | 37, 497, 523, 577, 632, 910, 1004, 1032 |
| AluI | AGCT | 8 cut(s) | 37, 497, 523, 577, 632, 910, 1004, 1032 |
| Alw21I | GWGCWC | 1 cut(s) | 466 |
| Alw26I | GTCTC | 2 cut(s) | 35, 434 |
| AlwI | GGATC | 4 cut(s) | 506, 519, 526, 539 |
| ApeKI | GCWGC | 6 cut(s) | 817, 965, 968, 1001, 1043, 1069 |
| ApoI | RAATTY | 1 cut(s) | 976 |
| AseI | ATTAAT | 1 cut(s) | 843 |
| AspLEI | GCGC | 1 cut(s) | 725 |
| AspS9I | GGNCC | 1 cut(s) | 868 |
| AsuHPI | GGTGA | 2 cut(s) | 307, 892 |
| AvaII | GGWCC | 1 cut(s) | 868 |
| BamHI | GGATCC | 2 cut(s) | 511, 531 |
| Bbv12I | GWGCWC | 1 cut(s) | 466 |
| BbvI | GCAGC | 6 cut(s) | 829, 977, 980, 1013, 1030, 1056 |
| BccI | CCATC | 4 cut(s) | 73, 94, 845, 871 |
| BciT130I | CCWGG | 3 cut(s) | 55, 368, 891 |
| BcoDI | GTCTC | 2 cut(s) | 35, 434 |
| BfaI | CTAG | 3 cut(s) | 101, 108, 564 |
| BfmI | CTRYAG | 2 cut(s) | 330, 1044 |
| BisI | GCNGC | 6 cut(s) | 818, 966, 969, 1002, 1044, 1070 |
| BlsI | GCNGC | 6 cut(s) | 819, 967, 970, 1003, 1045, 1071 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 368, 891 |
| Bme18I | GGWCC | 1 cut(s) | 868 |
| BmgT120I | GGNCC | 1 cut(s) | 868 |
| BmiI | GGNNCC | 5 cut(s) | 84, 178, 513, 533, 870 |
| BmrFI | CCNGG | 3 cut(s) | 55, 368, 891 |
| BmsI | GCATC | 2 cut(s) | 376, 736 |
| BpmI | CTGGAG | 2 cut(s) | 59, 638 |
| BpuEI | CTTGAG | 3 cut(s) | 509, 609, 630 |
| BsaJI | CCNNGG | 4 cut(s) | 53, 54, 366, 394 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 877, 1034 |
| Bse1I | ACTGG | 1 cut(s) | 513 |
| BseBI | CCWGG | 3 cut(s) | 55, 368, 891 |
| BseDI | CCNNGG | 4 cut(s) | 53, 54, 366, 394 |
| BseGI | GGATG | 1 cut(s) | 856 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 877, 1034 |
| BseMII | CTCAG | 4 cut(s) | 420, 492, 897, 1055 |
| BseNI | ACTGG | 1 cut(s) | 513 |
| BseRI | GAGGAG | 3 cut(s) | 189, 452, 456 |
| BseXI | GCAGC | 6 cut(s) | 829, 977, 980, 1013, 1030, 1056 |
| BseYI | CCCAGC | 1 cut(s) | 910 |
| BsgI | GTGCAG | 2 cut(s) | 797, 1055 |
| Bsh1236I | CGCG | 1 cut(s) | 723 |
| BsiHKAI | GWGCWC | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 877, 1034 |
| BsmAI | GTCTC | 2 cut(s) | 35, 434 |
| Bsp1286I | GDGCHC | 1 cut(s) | 466 |
| Bsp143I | GATC | 3 cut(s) | 511, 531, 990 |
| BspACI | CCGC | 2 cut(s) | 267, 552 |
| BspCNI | CTCAG | 4 cut(s) | 421, 493, 898, 1056 |
| BspFNI | CGCG | 1 cut(s) | 723 |
| BspLI | GGNNCC | 5 cut(s) | 84, 178, 513, 533, 870 |
| BspMAI | CTGCAG | 2 cut(s) | 334, 1048 |
| BspPI | GGATC | 4 cut(s) | 506, 519, 526, 539 |
| BsrI | ACTGG | 1 cut(s) | 513 |
| BssECI | CCNNGG | 4 cut(s) | 53, 54, 366, 394 |
| BssMI | GATC | 3 cut(s) | 511, 531, 990 |
| Bst2UI | CCWGG | 3 cut(s) | 55, 368, 891 |
| Bst4CI | ACNGT | 3 cut(s) | 46, 398, 421 |
| Bst6I | CTCTTC | 1 cut(s) | 474 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 823 |
| BstC8I | GCNNGC | 4 cut(s) | 35, 721, 828, 832 |
| BstDEI | CTNAG | 6 cut(s) | 199, 429, 501, 638, 906, 1064 |
| BstDSI | CCRYGG | 1 cut(s) | 394 |
| BstF5I | GGATG | 1 cut(s) | 856 |
| BstFNI | CGCG | 1 cut(s) | 723 |
| BstHHI | GCGC | 1 cut(s) | 725 |
| BstKTI | GATC | 3 cut(s) | 514, 534, 993 |
| BstMAI | GTCTC | 2 cut(s) | 35, 434 |
| BstMBI | GATC | 3 cut(s) | 511, 531, 990 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 338, 620, 629, 823 |
| BstNI | CCWGG | 3 cut(s) | 55, 368, 891 |
| BstNSI | RCATGY | 1 cut(s) | 838 |
| BstSCI | CCNGG | 3 cut(s) | 53, 366, 889 |
| BstSFI | CTRYAG | 2 cut(s) | 330, 1044 |
| BstUI | CGCG | 1 cut(s) | 723 |
| BstV1I | GCAGC | 6 cut(s) | 829, 977, 980, 1013, 1030, 1056 |
| BstX2I | RGATCY | 2 cut(s) | 511, 531 |
| BstYI | RGATCY | 2 cut(s) | 511, 531 |
| BtgI | CCRYGG | 1 cut(s) | 394 |
| BtsCI | GGATG | 1 cut(s) | 856 |
| BtsIMutI | CAGTG | 2 cut(s) | 506, 1000 |
| Cac8I | GCNNGC | 4 cut(s) | 35, 721, 828, 832 |
| CfoI | GCGC | 1 cut(s) | 725 |
| Cfr13I | GGNCC | 1 cut(s) | 868 |
| CviAII | CATG | 1 cut(s) | 835 |
| DdeI | CTNAG | 6 cut(s) | 199, 429, 501, 638, 906, 1064 |
| DpnI | GATC | 3 cut(s) | 513, 533, 992 |
| DpnII | GATC | 3 cut(s) | 511, 531, 990 |
| DraI | TTTAAA | 1 cut(s) | 661 |
| DraIII | CACNNNGTG | 1 cut(s) | 953 |
| Eam1104I | CTCTTC | 1 cut(s) | 474 |
| EarI | CTCTTC | 1 cut(s) | 474 |
| Eco32I | GATATC | 1 cut(s) | 205 |
| Eco47I | GGWCC | 1 cut(s) | 868 |
| EcoRII | CCWGG | 3 cut(s) | 53, 366, 889 |
| EcoRV | GATATC | 1 cut(s) | 205 |
| FaeI | CATG | 1 cut(s) | 838 |
| FaiI | YATR | 7 cut(s) | 585, 741, 836, 848, 925, 927, 1090 |
| FatI | CATG | 1 cut(s) | 834 |
| Fnu4HI | GCNGC | 6 cut(s) | 818, 966, 969, 1002, 1044, 1070 |
| FokI | GGATG | 1 cut(s) | 863 |
| Fsp4HI | GCNGC | 6 cut(s) | 818, 966, 969, 1002, 1044, 1070 |
| FspBI | CTAG | 3 cut(s) | 101, 108, 564 |
| GlaI | GCGC | 1 cut(s) | 724 |
| GluI | GCNGC | 6 cut(s) | 818, 966, 969, 1002, 1044, 1070 |
| GsaI | CCCAGC | 1 cut(s) | 914 |
| GsuI | CTGGAG | 2 cut(s) | 59, 638 |
| HhaI | GCGC | 1 cut(s) | 725 |
| Hin1II | CATG | 1 cut(s) | 838 |
| Hin6I | GCGC | 1 cut(s) | 723 |
| HinP1I | GCGC | 1 cut(s) | 723 |
| HincII | GTYRAC | 1 cut(s) | 730 |
| HindII | GTYRAC | 1 cut(s) | 730 |
| HindIII | AAGCTT | 1 cut(s) | 575 |
| HinfI | GANTC | 5 cut(s) | 184, 374, 503, 707, 935 |
| HphI | GGTGA | 2 cut(s) | 307, 892 |
| Hpy166II | GTNNAC | 2 cut(s) | 730, 883 |
| Hpy188I | TCNGA | 4 cut(s) | 456, 516, 907, 934 |
| Hpy188III | TCNNGA | 5 cut(s) | 424, 500, 526, 564, 617 |
| Hpy8I | GTNNAC | 2 cut(s) | 730, 883 |
| HpyAV | CCTTC | 5 cut(s) | 104, 158, 306, 427, 598 |
| HpyCH4III | ACNGT | 3 cut(s) | 46, 398, 421 |
| HpyCH4IV | ACGT | 2 cut(s) | 492, 920 |
| HpyCH4V | TGCA | 7 cut(s) | 332, 778, 796, 826, 982, 1046, 1072 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 338, 620, 629, 823 |
| HpyF3I | CTNAG | 6 cut(s) | 199, 429, 501, 638, 906, 1064 |
| HpySE526I | ACGT | 2 cut(s) | 492, 920 |
| Hsp92II | CATG | 1 cut(s) | 838 |
| HspAI | GCGC | 1 cut(s) | 723 |
| Kzo9I | GATC | 3 cut(s) | 511, 531, 990 |
| LmnI | GCTCC | 5 cut(s) | 88, 176, 469, 502, 688 |
| Lsp1109I | GCAGC | 6 cut(s) | 829, 977, 980, 1013, 1030, 1056 |
| LweI | GCATC | 2 cut(s) | 376, 736 |
| MaeI | CTAG | 3 cut(s) | 101, 108, 564 |
| MaeII | ACGT | 2 cut(s) | 492, 920 |
| MaeIII | GTNAC | 4 cut(s) | 415, 488, 504, 735 |
| MalI | GATC | 3 cut(s) | 513, 533, 992 |
| MboI | GATC | 3 cut(s) | 511, 531, 990 |
| MboII | GAAGA | 4 cut(s) | 383, 461, 814, 886 |
| MfeI | CAATTG | 1 cut(s) | 797 |
| MflI | RGATCY | 2 cut(s) | 511, 531 |
| MhlI | GDGCHC | 1 cut(s) | 466 |
| MluCI | AATT | 7 cut(s) | 27, 411, 474, 670, 753, 797, 976 |
| MlyI | GAGTC | 3 cut(s) | 178, 512, 929 |
| MseI | TTAA | 3 cut(s) | 569, 660, 843 |
| MslI | CAYNNNNRTG | 2 cut(s) | 399, 744 |
| MspA1I | CMGCKG | 2 cut(s) | 37, 1004 |
| MspR9I | CCNGG | 3 cut(s) | 55, 368, 891 |
| MunI | CAATTG | 1 cut(s) | 797 |
| MvaI | CCWGG | 3 cut(s) | 55, 368, 891 |
| MvnI | CGCG | 1 cut(s) | 723 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 338, 620, 629, 823 |
| NdeII | GATC | 3 cut(s) | 511, 531, 990 |
| NlaIII | CATG | 1 cut(s) | 838 |
| NlaIV | GGNNCC | 5 cut(s) | 84, 178, 513, 533, 870 |
| NmuCI | GTSAC | 1 cut(s) | 504 |
| NspI | RCATGY | 1 cut(s) | 838 |
| PasI | CCCWGGG | 1 cut(s) | 54 |
| PfeI | GAWTC | 2 cut(s) | 374, 707 |
| PkrI | GCNGC | 6 cut(s) | 819, 967, 970, 1003, 1045, 1071 |
| PleI | GAGTC | 3 cut(s) | 178, 511, 929 |
| PpsI | GAGTC | 3 cut(s) | 178, 511, 929 |
| PshBI | ATTAAT | 1 cut(s) | 843 |
| Psp6I | CCWGG | 3 cut(s) | 53, 366, 889 |
| PspFI | CCCAGC | 1 cut(s) | 910 |
| PspGI | CCWGG | 3 cut(s) | 53, 366, 889 |
| PspN4I | GGNNCC | 5 cut(s) | 84, 178, 513, 533, 870 |
| PspPI | GGNCC | 1 cut(s) | 868 |
| PstI | CTGCAG | 2 cut(s) | 334, 1048 |
| PsuI | RGATCY | 2 cut(s) | 511, 531 |
| PvuII | CAGCTG | 2 cut(s) | 37, 1004 |
| RseI | CAYNNNNRTG | 2 cut(s) | 399, 744 |
| SaqAI | TTAA | 3 cut(s) | 569, 660, 843 |
| SatI | GCNGC | 6 cut(s) | 818, 966, 969, 1002, 1044, 1070 |
| Sau3AI | GATC | 3 cut(s) | 511, 531, 990 |
| Sau96I | GGNCC | 1 cut(s) | 868 |
| SchI | GAGTC | 3 cut(s) | 178, 512, 929 |
| ScrFI | CCNGG | 3 cut(s) | 55, 368, 891 |
| SduI | GDGCHC | 1 cut(s) | 466 |
| SfaNI | GCATC | 2 cut(s) | 376, 736 |
| SfcI | CTRYAG | 2 cut(s) | 330, 1044 |
| SinI | GGWCC | 1 cut(s) | 868 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 399, 744 |
| SmlI | CTYRAG | 3 cut(s) | 524, 624, 645 |
| SmoI | CTYRAG | 3 cut(s) | 524, 624, 645 |
| Sse9I | AATT | 7 cut(s) | 27, 411, 474, 670, 753, 797, 976 |
| SsiI | CCGC | 2 cut(s) | 267, 552 |
| SspMI | CTAG | 3 cut(s) | 101, 108, 564 |
| StyD4I | CCNGG | 3 cut(s) | 53, 366, 889 |
| TaaI | ACNGT | 3 cut(s) | 46, 398, 421 |
| TaiI | ACGT | 2 cut(s) | 495, 923 |
| TaqI | TCGA | 2 cut(s) | 74, 1017 |
| TasI | AATT | 7 cut(s) | 27, 411, 474, 670, 753, 797, 976 |
| TfiI | GAWTC | 2 cut(s) | 374, 707 |
| Tru1I | TTAA | 3 cut(s) | 569, 660, 843 |
| Tru9I | TTAA | 3 cut(s) | 569, 660, 843 |
| TscAI | CASTG | 2 cut(s) | 513, 1000 |
| TseFI | GTSAC | 1 cut(s) | 504 |
| TseI | GCWGC | 6 cut(s) | 817, 965, 968, 1001, 1043, 1069 |
| Tsp45I | GTSAC | 1 cut(s) | 504 |
| TspDTI | ATGAA | 2 cut(s) | 102, 158 |
| TspRI | CASTG | 2 cut(s) | 513, 1000 |
| VpaK11BI | GGWCC | 1 cut(s) | 868 |
| VspI | ATTAAT | 1 cut(s) | 843 |
| XapI | RAATTY | 1 cut(s) | 976 |
| XbaI | TCTAGA | 1 cut(s) | 563 |
| XceI | RCATGY | 1 cut(s) | 838 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 155, 374 |
| XspI | CTAG | 3 cut(s) | 101, 108, 564 |