Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

12778515 .. 12783591

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGTACGGCGCGGCGGGGAAGAGCACGAGCTCGAGCTACGGCGCTTCATACGCCGCTGGGCTCAGCGAGATCTGGGCCGCGTACTTGGCCGAAATCGACCTCGGCGACGACAAACCCTGGCTCAACCTCACGCACTCCCTCGTCAGCTTCTTCATTACGCCGCCGGGCCAAGCTCTTCTCTCTCAGATCAAGGACGAGGACGGCGTGGTTGCGGTGTGGGTTGACTTTGAGAAATTTCGGAAAGAGTGTGAAGTTGAGGAGTTTTATGAAGCGTTGGAGGAGAAGCCGAAGGTAACCCTATTGTGTATGAGTATTGCAGTGCACAAGGTTCTGTTGACTCAATGGGAAAGTGATAGAATGGAGGATGATATCCGAGTTAATATTCGGTTGCATAACTACCCGGAATCGATTATTGCTTTGAAGAACTTGAAAGCTGCTTATATAGACAAGCTTGTATCTGTGCGCGGTAGTGTAGTAAAAGTTAGCACTGTGAGGCCTTTTGTGGTGCAAATGGATTTTGACTGTGTGAAGTGTAAGACGAGCATTACGCGTATGTTCCCTGATGGGAAGTTTTCCCCACCATTGAAATGTGATCTTCATGGGTGCAAGAGCAGAACTTTTCTTCCAAATCGACTGACTGCTCAAACAATAGATTTTCAAAAGATAAGGATACAGGAGCTGCTGAAACCTGAGGATCATGAAGAAGGCCGGGTGCCTCGAACAGTAGAATGTGAACTTCTTGAAGATCTTGTTGATGCATGCATCCCTGGAGATGTGGTGACTGTCACTGGGATAATAAGAGTCATTAACAATTACATGGACATTGGAGGAGGAAAATCGAAAGGCAAAAGTCAGGGAATTTACTATTTGTATCTAGAAGCTGTTTCAATTAAAAACTCCAAGTCACAGTCTATGCCTGAAGGTGTACAAGATTCTAGTTCTAATGCTGGGTCTGTAGCACTTGTTGACTCATTTTCCCCAAGGGATTTGGAATTCATTGTCAAGTTCTCGGAGGAACATGGTCCAGATACCTTCCGGCAACTAATCCAATCTATCTGTCCATCCATCTATGGCCATGAGCTCGTTAAAGCGGGGATAATACTGGCACTCTTTGGAGGTGTAAGGAAGCACTCCAATGATCAAAACAAGGTTCCTGTTAGGGGAGACATTCATGTCATTATTGTTGGTGATCCTGGACTAGGAAAGAGCCAAATACTTCAAGCAGCAGCAGCTGTTTCTCCGCGAGGTATTTATGTATGTGGTAATGCCACAACCAGAGCTGGGCTCACTGTAGCTGTTGTAAAGGATTCTATGACAAGTGATTATGCGTTTGAAGCAGGTGCCATGGTACTTGCAGATAGTGGCTTGTGCTGCATTGATGAGTTCGACAAAATGACTTCAGAGCATCAGGCCCTACTGGAAGCCATGGAACAGCAGTGTGTGTCTATTGCAAAGGCTGGATTAGTGGCAAGTCTGTCAGCACGAACTTCTGTCTTAGCAGCAGCAAACCCTGTTGGTGGTCATTATAATCGTGCCAAAACTGTGAATGAAAATCTGAAAATAAGTGCTGCTCTCCTCTCACGATTTGATTTGGTTTTCATATTACTTGACAAACCCGATGAACTTCTGGATAAGCGAGTCTCAGAGCACATTATGTCACTTCATACTGGATATGGAGAGCATTCGCCAGCTGCAAAAAAGATTCGTAGAGAAAATGCAGCATCACAAAGTGCAGAAGGCATAGATATGAGCGGAGGTCGTTCTTTGGTTTCAAGGTTGAGGCTTGACCCAAAGAAGGATGCTGATTTTGTTCCATTACCCATGCAACTTCTTCGCAAGTATATTGCTTATGCAAAAACGTTTGTCTTTCCAAGGATGTCAAAGCCGGCAGCAGAAATCCTGCAGAAATTTTACTTGAAACTGAGAGACCATGCTACATCTGCTGATAGCACACCAATAACAGCGAGGCAACTGGAGAGTCTGGTGAGGCTGACAGAAGCTCGAGCTAGGTTAGATTTAAGGGAGGAAATTACAGCCCAAGATGCAACGCATGGTGTTGTGGATTTTGGTCGGAGTGGAGGGATGAGTCAACAAAAAGAAGCAAAGCAGTTTTTAAGTGCCCTTAATAAGCAATCAGAGTTGCACCAGAAAGACACTTTCTCAATTTCTGAAATATACAGTTTGGCAGATAGGATTGGCCTAAGAGTTCCAGACATTGACACATTCGTTGATAACTTAAACAGTGTTGGCTGTCTACTCAAGAAGGAGCGAAGACATACCAGGAGTCAATCATCATCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

767

Amino Acids

84.59

Weight (kDa)

6.67

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	140 - 269	4.5e-28	MCM OB domain
MCM	PF00493	341 - 555	2.2e-90	MCM P-loop domain
AAA_5	PF07728	391 - 529	1.9e-07	AAA domain (dynein-related subfamily)
MCM_lid	PF17855	610 - 683	1.8e-23	MCM AAA-lid domain
WHD_MCM8	PF25051	688 - 758	5.8e-25	MCM8 winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1527
AarI	CACCTGC	1 cut(s)	1328
AasI	GACNNNNNNGTC	1 cut(s)	1172
Acc36I	ACCTGC	1 cut(s)	1328
AccB1I	GGYRCC	2 cut(s)	712, 1340
AccBSI	CCGCTC	1 cut(s)	1752
AccI	GTMKAC	1 cut(s)	2254
AccII	CGCG	5 cut(s)	11, 80, 465, 550, 1243
AclI	AACGTT	1 cut(s)	1859
AclWI	GGATC	2 cut(s)	702, 1184
AcoI	YGGCCR	2 cut(s)	87, 1072
AcsI	RAATTY	4 cut(s)	233, 858, 992, 1907
AcuI	CTGAAG	2 cut(s)	939, 1383
AdeI	CACNNNGTG	1 cut(s)	1730
AfaI	GTAC	4 cut(s)	5, 83, 927, 1350
AfiI	CCNNNNNNNGG	5 cut(s)	1160, 1199, 1281, 1517, 1795
AflIII	ACRYGT	1 cut(s)	548
AjnI	CCWGG	4 cut(s)	116, 766, 1192, 2279
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
Alw21I	GWGCWC	5 cut(s)	26, 32, 324, 1083, 1650
Alw26I	GTCTC	3 cut(s)	1158, 1645, 1920
Alw44I	GTGCAC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	702, 1184
AlwNI	CAGNNNCTG	2 cut(s)	679, 1232
Ama87I	CYCGRG	2 cut(s)	31, 2001
AoxI	GGCC	8 cut(s)	75, 87, 166, 494, 706, 1072, 1410, 2197
ApaLI	GTGCAC	1 cut(s)	320
ApoI	RAATTY	4 cut(s)	233, 858, 992, 1907
AspLEI	GCGC	3 cut(s)	11, 44, 465
AspS9I	GGNCC	4 cut(s)	75, 166, 1022, 1411
AsuC2I	CCSGG	3 cut(s)	165, 401, 710
AsuHPI	GGTGA	3 cut(s)	790, 1199, 1996
AvaI	CYCGRG	2 cut(s)	31, 2001
AvaII	GGWCC	1 cut(s)	1022
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	2 cut(s)	324, 2122
BalI	TGGCCA	1 cut(s)	1074
BanI	GGYRCC	2 cut(s)	712, 1340
BanII	GRGCYC	4 cut(s)	32, 63, 1083, 1287
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	2278
Bbv12I	GWGCWC	5 cut(s)	26, 32, 324, 1083, 1650
BccI	CCATC	3 cut(s)	557, 1069, 1073
BceAI	ACGGC	3 cut(s)	22, 55, 217
BcgI	CGANNNNNNTGC	2 cut(s)	1814, 1848
BciT130I	CCWGG	4 cut(s)	118, 768, 1194, 2281
BciVI	GTATCC	1 cut(s)	663
BclI	TGATCA	1 cut(s)	1138
BcnI	CCSGG	3 cut(s)	165, 401, 710
BcoDI	GTCTC	3 cut(s)	1158, 1645, 1920
BfaI	CTAG	4 cut(s)	875, 936, 1199, 2007
BfmI	CTRYAG	3 cut(s)	954, 1290, 1901
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	1328
BfuI	GTATCC	1 cut(s)	663
BglII	AGATCT	2 cut(s)	69, 745
BlpI	GCTNAGC	1 cut(s)	62
Bme1390I	CCNGG	7 cut(s)	118, 165, 401, 710, 768, 1194, 2281
Bme18I	GGWCC	1 cut(s)	1022
BmeT110I	CYCGRG	2 cut(s)	31, 2001
BmgT120I	GGNCC	4 cut(s)	75, 166, 1022, 1411
BmiI	GGNNCC	3 cut(s)	714, 1152, 1342
BmrFI	CCNGG	7 cut(s)	118, 165, 401, 710, 768, 1194, 2281
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	6 cut(s)	745, 771, 1414, 1730, 1789, 2032
BmuI	ACTGGG	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	2278
BplI	GAGNNNNNCTC	2 cut(s)	1269, 1301
BpmI	CTGGAG	2 cut(s)	789, 1994
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	2243
BpuMI	CCSGG	3 cut(s)	165, 401, 710
Bsa29I	ATCGAT	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	1920
BsaJI	CCNNGG	7 cut(s)	100, 116, 766, 980, 1344, 1425, 1871
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	5 cut(s)	1160, 1199, 1281, 1517, 1795
Bse118I	RCCGGY	1 cut(s)	1885
Bse1I	ACTGG	5 cut(s)	793, 1107, 1422, 1672, 1977
Bse21I	CCTNAGG	1 cut(s)	690
BseBI	CCWGG	4 cut(s)	118, 768, 1194, 2281
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	7 cut(s)	100, 116, 766, 980, 1344, 1425, 1871
BseGI	GGATG	6 cut(s)	370, 762, 1061, 1804, 1881, 2088
BseLI	CCNNNNNNNGG	5 cut(s)	1160, 1199, 1281, 1517, 1795
BseMII	CTCAG	5 cut(s)	76, 197, 681, 1656, 1913
BseNI	ACTGG	5 cut(s)	793, 1107, 1422, 1672, 1977
BseRI	GAGGAG	4 cut(s)	272, 293, 843, 1565
BseSI	GKGCMC	2 cut(s)	324, 2122
BseYI	CCCAGC	3 cut(s)	56, 947, 1280
BsgI	GTGCAG	1 cut(s)	1752
Bsh1236I	CGCG	5 cut(s)	11, 80, 465, 550, 1243
BshFI	GGCC	8 cut(s)	77, 89, 168, 496, 708, 1074, 1412, 2199
BshNI	GGYRCC	2 cut(s)	712, 1340
BshVI	ATCGAT	1 cut(s)	407
BsiHKAI	GWGCWC	5 cut(s)	26, 32, 324, 1083, 1650
BsiHKCI	CYCGRG	2 cut(s)	31, 2001
BsiSI	CCGG	5 cut(s)	164, 401, 709, 1036, 1886
BslI	CCNNNNNNNGG	5 cut(s)	1160, 1199, 1281, 1517, 1795
BsmAI	GTCTC	3 cut(s)	1158, 1645, 1920
BsmI	GAATGC	1 cut(s)	1681
BsnI	GGCC	8 cut(s)	77, 89, 168, 496, 708, 1074, 1412, 2199
Bso31I	GGTCTC	1 cut(s)	1920
BsoBI	CYCGRG	2 cut(s)	31, 2001
Bsp1286I	GDGCHC	8 cut(s)	26, 32, 63, 324, 1083, 1287, 1650, 2122
Bsp1407I	TGTACA	1 cut(s)	925
Bsp143I	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
Bsp1720I	GCTNAGC	1 cut(s)	62
Bsp19I	CCATGG	2 cut(s)	1344, 1425
BspANI	GGCC	8 cut(s)	77, 89, 168, 496, 708, 1074, 1412, 2199
BspCNI	CTCAG	5 cut(s)	75, 196, 682, 1655, 1914
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	5 cut(s)	11, 80, 465, 550, 1243
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	3 cut(s)	714, 1152, 1342
BspMAI	CTGCAG	1 cut(s)	1905
BspMI	ACCTGC	1 cut(s)	1328
BspPI	GGATC	2 cut(s)	702, 1184
BspQI	GCTCTTC	2 cut(s)	14, 180
BspT107I	GGYRCC	2 cut(s)	712, 1340
BspTNI	GGTCTC	1 cut(s)	1920
BsrBI	CCGCTC	1 cut(s)	1752
BsrFI	RCCGGY	1 cut(s)	1885
BsrGI	TGTACA	1 cut(s)	925
BsrI	ACTGG	5 cut(s)	793, 1107, 1422, 1672, 1977
BssAI	RCCGGY	1 cut(s)	1885
BssECI	CCNNGG	7 cut(s)	100, 116, 766, 980, 1344, 1425, 1871
BssMI	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
BssSI	CACGAG	1 cut(s)	25
BssT1I	CCWWGG	4 cut(s)	980, 1344, 1425, 1871
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	4 cut(s)	118, 768, 1194, 2281
Bst4CI	ACNGT	9 cut(s)	490, 524, 724, 784, 909, 1291, 1543, 2180, 2243
Bst6I	CTCTTC	2 cut(s)	14, 180
BstAUI	TGTACA	1 cut(s)	925
BstC8I	GCNNGC	3 cut(s)	760, 1689, 1887
BstDEI	CTNAG	7 cut(s)	62, 183, 690, 1495, 1642, 1922, 2201
BstDSI	CCRYGG	2 cut(s)	1344, 1425
BstEII	GGTNACC	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	1197
BstF5I	GGATG	6 cut(s)	370, 762, 1061, 1804, 1881, 2088
BstFNI	CGCG	5 cut(s)	11, 80, 465, 550, 1243
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	3 cut(s)	11, 44, 465
BstKTI	GATC	7 cut(s)	72, 189, 595, 697, 748, 1141, 1192
BstMAI	GTCTC	3 cut(s)	1158, 1645, 1920
BstMBI	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 86, 1229, 1334, 1371, 1940, 2042
BstNI	CCWGG	4 cut(s)	118, 768, 1194, 2281
BstNSI	RCATGY	1 cut(s)	762
BstPI	GGTNACC	1 cut(s)	292
BstSCI	CCNGG	7 cut(s)	116, 163, 399, 708, 766, 1192, 2279
BstSFI	CTRYAG	3 cut(s)	954, 1290, 1901
BstSLI	GKGCMC	2 cut(s)	324, 2122
BstUI	CGCG	5 cut(s)	11, 80, 465, 550, 1243
BstV2I	GAAGAC	1 cut(s)	2278
BstX2I	RGATCY	2 cut(s)	69, 745
BstYI	RGATCY	2 cut(s)	69, 745
Bsu15I	ATCGAT	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	8 cut(s)	77, 89, 168, 496, 708, 1074, 1412, 2199
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	1344, 1425
BtsCI	GGATG	6 cut(s)	370, 762, 1061, 1804, 1881, 2088
BtsI	GCAGTG	2 cut(s)	324, 1442
BtsIMutI	CAGTG	6 cut(s)	324, 486, 786, 1287, 1442, 2248
BveI	ACCTGC	1 cut(s)	1328
Cac8I	GCNNGC	3 cut(s)	760, 1689, 1887
CaiI	CAGNNNCTG	2 cut(s)	679, 1232
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	3 cut(s)	11, 44, 465
Cfr10I	RCCGGY	1 cut(s)	1885
Cfr13I	GGNCC	4 cut(s)	75, 166, 1022, 1411
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	4 cut(s)	4, 82, 926, 1349
CviQI	GTAC	4 cut(s)	4, 82, 926, 1349
DdeI	CTNAG	7 cut(s)	62, 183, 690, 1495, 1642, 1922, 2201
DpnI	GATC	7 cut(s)	71, 188, 594, 696, 747, 1140, 1191
DpnII	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
DraIII	CACNNNGTG	1 cut(s)	1730
DrdI	GACNNNNNNGTC	1 cut(s)	1172
DseDI	GACNNNNNNGTC	1 cut(s)	1172
EaeI	YGGCCR	2 cut(s)	87, 1072
Eam1104I	CTCTTC	2 cut(s)	14, 180
EarI	CTCTTC	2 cut(s)	14, 180
Ecl136II	GAGCTC	2 cut(s)	30, 1081
Eco130I	CCWWGG	4 cut(s)	980, 1344, 1425, 1871
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	4 cut(s)	32, 63, 1083, 1287
Eco31I	GGTCTC	1 cut(s)	1920
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	1022
Eco53kI	GAGCTC	2 cut(s)	30, 1081
Eco57I	CTGAAG	2 cut(s)	939, 1383
Eco81I	CCTNAGG	1 cut(s)	690
Eco88I	CYCGRG	2 cut(s)	31, 2001
Eco91I	GGTNACC	1 cut(s)	292
EcoICRI	GAGCTC	2 cut(s)	30, 1081
EcoNI	CCTNNNNNAGG	1 cut(s)	1197
EcoO109I	RGGNCCY	1 cut(s)	1411
EcoO65I	GGTNACC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	4 cut(s)	116, 766, 1192, 2279
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	4 cut(s)	980, 1344, 1425, 1871
EcoT22I	ATGCAT	2 cut(s)	760, 764
EcoT38I	GRGCYC	4 cut(s)	32, 63, 1083, 1287
ErhI	CCWWGG	4 cut(s)	980, 1344, 1425, 1871
FauI	CCCGC	2 cut(s)	7, 1084
FbaI	TGATCA	1 cut(s)	1138
FblI	GTMKAC	1 cut(s)	2254
FokI	GGATG	6 cut(s)	377, 749, 1048, 1811, 1888, 2095
FriOI	GRGCYC	4 cut(s)	32, 63, 1083, 1287
FspBI	CTAG	4 cut(s)	875, 936, 1199, 2007
GlaI	GCGC	3 cut(s)	10, 43, 464
GsaI	CCCAGC	3 cut(s)	60, 951, 1284
GsuI	CTGGAG	2 cut(s)	789, 1994
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	8 cut(s)	77, 89, 168, 496, 708, 1074, 1412, 2199
HapII	CCGG	5 cut(s)	164, 401, 709, 1036, 1886
HhaI	GCGC	3 cut(s)	11, 44, 465
Hin6I	GCGC	3 cut(s)	9, 42, 463
HinP1I	GCGC	3 cut(s)	9, 42, 463
HincII	GTYRAC	4 cut(s)	223, 336, 967, 2090
HindII	GTYRAC	4 cut(s)	223, 336, 967, 2090
HindIII	AAGCTT	1 cut(s)	449
HpaII	CCGG	5 cut(s)	164, 401, 709, 1036, 1886
HphI	GGTGA	3 cut(s)	790, 1199, 1996
Hpy166II	GTNNAC	8 cut(s)	223, 322, 336, 734, 926, 967, 2090, 2255
Hpy188III	TCNNGA	8 cut(s)	698, 740, 875, 1025, 1581, 1628, 2210, 2260
Hpy8I	GTNNAC	8 cut(s)	223, 322, 336, 734, 926, 967, 2090, 2255
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	7 cut(s)	283, 698, 914, 1042, 1730, 1789, 2257
HpyCH4III	ACNGT	9 cut(s)	490, 524, 724, 784, 909, 1291, 1543, 2180, 2243
HpyCH4IV	ACGT	1 cut(s)	1859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 86, 1229, 1334, 1371, 1940, 2042
HpyF3I	CTNAG	7 cut(s)	62, 183, 690, 1495, 1642, 1922, 2201
HpySE526I	ACGT	1 cut(s)	1859
HspAI	GCGC	3 cut(s)	9, 42, 463
KroI	GCCGGC	1 cut(s)	1885
KroNI	GCCGGC	1 cut(s)	1887
Ksp22I	TGATCA	1 cut(s)	1138
Kzo9I	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
LguI	GCTCTTC	2 cut(s)	14, 180
LmnI	GCTCC	2 cut(s)	676, 2266
LweI	GCATC	6 cut(s)	745, 771, 1414, 1730, 1789, 2032
MaeI	CTAG	4 cut(s)	875, 936, 1199, 2007
MaeII	ACGT	1 cut(s)	1859
MaeIII	GTNAC	5 cut(s)	292, 778, 784, 903, 1656
MalI	GATC	7 cut(s)	71, 188, 594, 696, 747, 1140, 1191
MbiI	CCGCTC	1 cut(s)	1752
MboI	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
MflI	RGATCY	2 cut(s)	69, 745
MhlI	GDGCHC	8 cut(s)	26, 32, 63, 324, 1083, 1287, 1650, 2122
MlsI	TGGCCA	1 cut(s)	1074
MluCI	AATT	8 cut(s)	233, 811, 858, 888, 992, 1907, 2028, 2163
MluI	ACGCGT	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	1074
MlyI	GAGTC	7 cut(s)	331, 810, 962, 1647, 1987, 2095, 2293
MmeI	TCCRAC	2 cut(s)	255, 2051
Mox20I	TGGCCA	1 cut(s)	1074
Mph1103I	ATGCAT	2 cut(s)	760, 764
MroNI	GCCGGC	1 cut(s)	1885
MscI	TGGCCA	1 cut(s)	1074
MseI	TTAA	8 cut(s)	378, 807, 891, 1086, 2018, 2114, 2124, 2237
MslI	CAYNNNNRTG	4 cut(s)	586, 1134, 1745, 2299
Msp20I	TGGCCA	1 cut(s)	1074
MspA1I	CMGCKG	3 cut(s)	56, 1232, 1691
MspI	CCGG	5 cut(s)	164, 401, 709, 1036, 1886
MspR9I	CCNGG	7 cut(s)	118, 165, 401, 710, 768, 1194, 2281
Mva1269I	GAATGC	1 cut(s)	1681
MvaI	CCWGG	4 cut(s)	118, 768, 1194, 2281
MvnI	CGCG	5 cut(s)	11, 80, 465, 550, 1243
MwoI	GCNNNNNNNGC	7 cut(s)	50, 86, 1229, 1334, 1371, 1940, 2042
NaeI	GCCGGC	1 cut(s)	1887
NciI	CCSGG	3 cut(s)	165, 401, 710
NcoI	CCATGG	2 cut(s)	1344, 1425
NdeII	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
NgoMIV	GCCGGC	1 cut(s)	1885
NlaIV	GGNNCC	3 cut(s)	714, 1152, 1342
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	4 cut(s)	778, 784, 903, 1656
NsiI	ATGCAT	2 cut(s)	760, 764
NspI	RCATGY	1 cut(s)	762
PaeI	GCATGC	1 cut(s)	762
PaeR7I	CTCGAG	2 cut(s)	31, 2001
PagI	TCATGA	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	1328
PceI	AGGCCT	1 cut(s)	496
PciSI	GCTCTTC	2 cut(s)	14, 180
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 201
PctI	GAATGC	1 cut(s)	1681
PdiI	GCCGGC	1 cut(s)	1887
PfeI	GAWTC	4 cut(s)	404, 932, 1307, 1702
PfoI	TCCNGGA	1 cut(s)	1192
PleI	GAGTC	7 cut(s)	331, 809, 962, 1646, 1986, 2094, 2292
PpsI	GAGTC	7 cut(s)	331, 809, 962, 1646, 1986, 2094, 2292
PsiI	TTATAA	1 cut(s)	1527
Psp124BI	GAGCTC	2 cut(s)	32, 1083
Psp1406I	AACGTT	1 cut(s)	1859
Psp6I	CCWGG	4 cut(s)	116, 766, 1192, 2279
PspEI	GGTNACC	1 cut(s)	292
PspFI	CCCAGC	3 cut(s)	56, 947, 1280
PspGI	CCWGG	4 cut(s)	116, 766, 1192, 2279
PspN4I	GGNNCC	3 cut(s)	714, 1152, 1342
PspPI	GGNCC	4 cut(s)	75, 166, 1022, 1411
PspXI	VCTCGAGB	2 cut(s)	31, 2001
PstI	CTGCAG	1 cut(s)	1905
PstNI	CAGNNNCTG	2 cut(s)	679, 1232
PsuI	RGATCY	2 cut(s)	69, 745
PvuII	CAGCTG	2 cut(s)	1232, 1691
RsaI	GTAC	4 cut(s)	5, 83, 927, 1350
RsaNI	GTAC	4 cut(s)	4, 82, 926, 1349
RseI	CAYNNNNRTG	4 cut(s)	586, 1134, 1745, 2299
SacI	GAGCTC	2 cut(s)	32, 1083
SapI	GCTCTTC	2 cut(s)	14, 180
SaqAI	TTAA	8 cut(s)	378, 807, 891, 1086, 2018, 2114, 2124, 2237
Sau3AI	GATC	7 cut(s)	69, 186, 592, 694, 745, 1138, 1189
Sau96I	GGNCC	4 cut(s)	75, 166, 1022, 1411
SchI	GAGTC	7 cut(s)	331, 810, 962, 1647, 1987, 2095, 2293
ScrFI	CCNGG	7 cut(s)	118, 165, 401, 710, 768, 1194, 2281
SduI	GDGCHC	8 cut(s)	26, 32, 63, 324, 1083, 1287, 1650, 2122
SfaNI	GCATC	6 cut(s)	745, 771, 1414, 1730, 1789, 2032
SfcI	CTRYAG	3 cut(s)	954, 1290, 1901
Sfr274I	CTCGAG	2 cut(s)	31, 2001
SinI	GGWCC	1 cut(s)	1022
SlaI	CTCGAG	2 cut(s)	31, 2001
SmiMI	CAYNNNNRTG	4 cut(s)	586, 1134, 1745, 2299
SmlI	CTYRAG	3 cut(s)	31, 2001, 2258
SmoI	CTYRAG	3 cut(s)	31, 2001, 2258
SphI	GCATGC	1 cut(s)	762
Sse9I	AATT	8 cut(s)	233, 811, 858, 888, 992, 1907, 2028, 2163
SseBI	AGGCCT	1 cut(s)	496
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	4 cut(s)	875, 936, 1199, 2007
SstI	GAGCTC	2 cut(s)	32, 1083
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	7 cut(s)	116, 163, 399, 708, 766, 1192, 2279
StyI	CCWWGG	4 cut(s)	980, 1344, 1425, 1871
TaaI	ACNGT	9 cut(s)	490, 524, 724, 784, 909, 1291, 1543, 2180, 2243
TaiI	ACGT	1 cut(s)	1862
TaqI	TCGA	8 cut(s)	32, 96, 407, 631, 718, 839, 1386, 2002
TasI	AATT	8 cut(s)	233, 811, 858, 888, 992, 1907, 2028, 2163
TatI	WGTACW	1 cut(s)	925
TauI	GCSGC	4 cut(s)	14, 56, 80, 163
TfiI	GAWTC	4 cut(s)	404, 932, 1307, 1702
Tru1I	TTAA	8 cut(s)	378, 807, 891, 1086, 2018, 2114, 2124, 2237
Tru9I	TTAA	8 cut(s)	378, 807, 891, 1086, 2018, 2114, 2124, 2237
TscAI	CASTG	6 cut(s)	324, 493, 793, 1294, 1442, 2248
TseFI	GTSAC	4 cut(s)	778, 784, 903, 1656
Tsp45I	GTSAC	4 cut(s)	778, 784, 903, 1656
TspRI	CASTG	6 cut(s)	324, 493, 793, 1294, 1442, 2248
VneI	GTGCAC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	1022
XagI	CCTNNNNNAGG	1 cut(s)	1197
XapI	RAATTY	4 cut(s)	233, 858, 992, 1907
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	1 cut(s)	762
XhoI	CTCGAG	2 cut(s)	31, 2001
XmiI	GTMKAC	1 cut(s)	2254
XspI	CTAG	4 cut(s)	875, 936, 1199, 2007
Zsp2I	ATGCAT	2 cut(s)	760, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.