Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

36185103 .. 36186399

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGCGGCTCAACCCGACGTTGGATTCTCTGCGCGTCCTATGTAACGGGGGCACGGGGGCTCCGTTACTCTTCTTTTTCCTTCCCCGAAGTCTGTCCCTCCTTGGGATAATGGCGCGGCTCAACCCGACATTGGATTCCATAGATGGAGGAAATAACAAAGCAGCCGAGAGTAGTGCTAGCATGCGATCTAGGTGGATTCCCACTACGGACCATATAAGAATCCTCAAGGATCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATGGACCGATTCGGAGGATCCGTTTCCACTGAGTTTGTTTGGCCGGATCGAGGTCAAGAATGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAGGCGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGGAAAGATCGGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACACGAGGATCGAAATATTAACTTCGGATCTTCATCATCGCTTCTTCTTCTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

9.09

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	7, 36, 118
AciI	CCGC	2 cut(s)	7, 118
AclWI	GGATC	6 cut(s)	240, 279, 292, 321, 465, 484
AcoI	YGGCCR	1 cut(s)	308
AfiI	CCNNNNNNNGG	5 cut(s)	22, 105, 133, 268, 317
AlwI	GGATC	6 cut(s)	240, 279, 292, 321, 465, 484
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	3 cut(s)	7, 36, 118
AspS9I	GGNCC	4 cut(s)	211, 258, 271, 378
AsuHPI	GGTGA	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	4 cut(s)	211, 258, 271, 378
BaeGI	GKGCMC	2 cut(s)	56, 402
BamHI	GGATCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	64, 359
BauI	CACGAG	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BfaI	CTAG	2 cut(s)	180, 192
BisI	GCNGC	3 cut(s)	8, 119, 165
BlsI	GCNGC	3 cut(s)	9, 120, 166
Bme18I	GGWCC	4 cut(s)	211, 258, 271, 378
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	4 cut(s)	211, 258, 271, 378
BmiI	GGNNCC	3 cut(s)	63, 260, 286
BmtI	GCTAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	103, 402
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 273, 303
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 105, 133, 268, 317
Bse8I	GATNNNNATC	1 cut(s)	481
BseDI	CCNNGG	2 cut(s)	103, 402
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	481
BseLI	CCNNNNNNNGG	5 cut(s)	22, 105, 133, 268, 317
BseMII	CTCAG	1 cut(s)	288
BseSI	GKGCMC	2 cut(s)	56, 402
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	3 cut(s)	7, 36, 118
BshFI	GGCC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	82, 244
BslI	CCNNNNNNNGG	5 cut(s)	22, 105, 133, 268, 317
BsmFI	GGGAC	2 cut(s)	82, 244
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	4 cut(s)	56, 64, 359, 402
Bsp143I	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	7, 118
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	3 cut(s)	7, 36, 118
BspLI	GGNNCC	3 cut(s)	63, 260, 286
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	6 cut(s)	240, 279, 292, 321, 465, 484
BssECI	CCNNGG	2 cut(s)	103, 402
BssMI	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	2 cut(s)	103, 402
Bst2BI	CACGAG	1 cut(s)	452
Bst6I	CTCTTC	2 cut(s)	77, 368
BstC8I	GCNNGC	2 cut(s)	181, 185
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	3 cut(s)	7, 36, 118
BstHHI	GCGC	3 cut(s)	7, 36, 118
BstKTI	GATC	7 cut(s)	191, 235, 287, 316, 413, 460, 479
BstMBI	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
BstNSI	RCATGY	1 cut(s)	187
BstSLI	GKGCMC	2 cut(s)	56, 402
BstUI	CGCG	3 cut(s)	7, 36, 118
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	3 cut(s)	232, 284, 476
BstYI	RGATCY	3 cut(s)	232, 284, 476
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	181, 185
CfoI	GCGC	3 cut(s)	7, 36, 118
Cfr13I	GGNCC	4 cut(s)	211, 258, 271, 378
CseI	GACGC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	3 cut(s)	184, 395, 403
CviJI	RGCY	7 cut(s)	10, 62, 121, 167, 310, 357, 418
CviKI_1	RGCY	7 cut(s)	10, 62, 121, 167, 310, 357, 418
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	7 cut(s)	190, 234, 286, 315, 412, 459, 478
DpnII	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	77, 368
EarI	CTCTTC	2 cut(s)	77, 368
Eco130I	CCWWGG	2 cut(s)	103, 402
Eco24I	GRGCYC	2 cut(s)	64, 359
Eco47I	GGWCC	4 cut(s)	211, 258, 271, 378
Eco88I	CYCGRG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	103, 402
EcoT38I	GRGCYC	2 cut(s)	64, 359
ErhI	CCWWGG	2 cut(s)	103, 402
FaeI	CATG	3 cut(s)	187, 398, 406
FaiI	YATR	8 cut(s)	43, 143, 185, 216, 218, 269, 396, 404
FaqI	GGGAC	2 cut(s)	82, 244
FatI	CATG	3 cut(s)	183, 394, 402
Fnu4HI	GCNGC	3 cut(s)	8, 119, 165
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	64, 359
Fsp4HI	GCNGC	3 cut(s)	8, 119, 165
FspBI	CTAG	2 cut(s)	180, 192
GlaI	GCGC	3 cut(s)	6, 35, 117
GluI	GCNGC	3 cut(s)	8, 119, 165
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	3 cut(s)	7, 36, 118
Hin1II	CATG	3 cut(s)	187, 398, 406
Hin6I	GCGC	3 cut(s)	5, 34, 116
HinP1I	GCGC	3 cut(s)	5, 34, 116
HinfI	GANTC	5 cut(s)	26, 137, 199, 222, 276
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	347, 381
Hpy188I	TCNGA	3 cut(s)	281, 388, 476
Hpy188III	TCNNGA	3 cut(s)	323, 344, 360
Hpy8I	GTNNAC	2 cut(s)	347, 381
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	187, 398, 406
HspAI	GCGC	3 cut(s)	5, 34, 116
Kzo9I	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	2 cut(s)	324, 485
Lsp1109I	GCAGC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	180, 192
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	44, 66, 436
MalI	GATC	7 cut(s)	190, 234, 286, 315, 412, 459, 478
MboI	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
MboII	GAAGA	6 cut(s)	64, 382, 385, 471, 485, 488
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	3 cut(s)	232, 284, 476
MhlI	GDGCHC	4 cut(s)	56, 64, 359, 402
MluCI	AATT	1 cut(s)	442
MnlI	CCTC	8 cut(s)	110, 143, 236, 275, 311, 358, 369, 448
MseI	TTAA	1 cut(s)	468
MspI	CCGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	442
MvnI	CGCG	3 cut(s)	7, 36, 118
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	3 cut(s)	187, 398, 406
NlaIV	GGNNCC	3 cut(s)	63, 260, 286
NmeAIII	GCCGAG	1 cut(s)	193
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	3 cut(s)	62, 285, 365
PfeI	GAWTC	5 cut(s)	26, 137, 199, 222, 276
PkrI	GCNGC	3 cut(s)	9, 120, 166
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	63, 260, 286
PspPI	GGNCC	4 cut(s)	211, 258, 271, 378
PspPPI	RGGWCCY	1 cut(s)	258
PsuI	RGATCY	3 cut(s)	232, 284, 476
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	8, 119, 165
Sau3AI	GATC	7 cut(s)	188, 232, 284, 313, 410, 457, 476
Sau96I	GGNCC	4 cut(s)	211, 258, 271, 378
SduI	GDGCHC	4 cut(s)	56, 64, 359, 402
SetI	ASST	5 cut(s)	23, 197, 260, 322, 380
SinI	GGWCC	4 cut(s)	211, 258, 271, 378
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	2 cut(s)	7, 118
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	180, 192
StyI	CCWWGG	2 cut(s)	103, 402
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	316, 460
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	442
TauI	GCSGC	2 cut(s)	10, 121
TfiI	GAWTC	5 cut(s)	26, 137, 199, 222, 276
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	383, 471
TspGWI	ACGGA	3 cut(s)	54, 224, 277
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	4 cut(s)	211, 258, 271, 378
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	2 cut(s)	180, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.