Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 717 |
| Acc65I | GGTACC | 1 cut(s) | 819 |
| AccB1I | GGYRCC | 1 cut(s) | 819 |
| AccBSI | CCGCTC | 1 cut(s) | 825 |
| AciI | CCGC | 2 cut(s) | 823, 847 |
| AclI | AACGTT | 1 cut(s) | 234 |
| AclWI | GGATC | 4 cut(s) | 197, 481, 559, 589 |
| AcoI | YGGCCR | 2 cut(s) | 844, 880 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AfaI | GTAC | 7 cut(s) | 67, 94, 212, 297, 389, 529, 821 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 755 |
| AgsI | TTSAA | 3 cut(s) | 133, 224, 731 |
| AhlI | ACTAGT | 2 cut(s) | 56, 530 |
| AluBI | AGCT | 3 cut(s) | 431, 518, 862 |
| AluI | AGCT | 3 cut(s) | 431, 518, 862 |
| Alw21I | GWGCWC | 1 cut(s) | 864 |
| Alw26I | GTCTC | 1 cut(s) | 199 |
| AlwI | GGATC | 4 cut(s) | 197, 481, 559, 589 |
| AoxI | GGCC | 2 cut(s) | 844, 880 |
| ApeKI | GCWGC | 2 cut(s) | 42, 518 |
| AseI | ATTAAT | 2 cut(s) | 336, 372 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 236, 284 |
| Asp718I | GGTACC | 1 cut(s) | 819 |
| AspS9I | GGNCC | 2 cut(s) | 136, 162 |
| AsuHPI | GGTGA | 3 cut(s) | 603, 671, 770 |
| AvaII | GGWCC | 2 cut(s) | 136, 162 |
| BanI | GGYRCC | 1 cut(s) | 819 |
| BanII | GRGCYC | 1 cut(s) | 864 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 125, 157 |
| BauI | CACGAG | 1 cut(s) | 264 |
| BbsI | GAAGAC | 1 cut(s) | 768 |
| Bbv12I | GWGCWC | 1 cut(s) | 864 |
| BbvI | GCAGC | 2 cut(s) | 54, 505 |
| BccI | CCATC | 3 cut(s) | 32, 317, 670 |
| BceAI | ACGGC | 4 cut(s) | 229, 817, 850, 895 |
| BclI | TGATCA | 1 cut(s) | 115 |
| BcoDI | GTCTC | 1 cut(s) | 199 |
| BcuI | ACTAGT | 2 cut(s) | 56, 530 |
| BfaI | CTAG | 2 cut(s) | 57, 531 |
| BfmI | CTRYAG | 2 cut(s) | 519, 710 |
| BfuAI | ACCTGC | 1 cut(s) | 717 |
| BisI | GCNGC | 3 cut(s) | 43, 519, 847 |
| BlpI | GCTNAGC | 1 cut(s) | 863 |
| BlsI | GCNGC | 3 cut(s) | 44, 520, 848 |
| Bme18I | GGWCC | 2 cut(s) | 136, 162 |
| BmgT120I | GGNCC | 2 cut(s) | 136, 162 |
| BmiI | GGNNCC | 5 cut(s) | 6, 164, 461, 718, 821 |
| BmsI | GCATC | 1 cut(s) | 589 |
| BpiI | GAAGAC | 1 cut(s) | 768 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 863 |
| BpuEI | CTTGAG | 1 cut(s) | 878 |
| BsaBI | GATNNNNATC | 1 cut(s) | 640 |
| BsaJI | CCNNGG | 3 cut(s) | 463, 483, 769 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 755 |
| Bse8I | GATNNNNATC | 1 cut(s) | 640 |
| BseDI | CCNNGG | 3 cut(s) | 463, 483, 769 |
| BseGI | GGATG | 2 cut(s) | 685, 765 |
| BseJI | GATNNNNATC | 1 cut(s) | 640 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BseMII | CTCAG | 2 cut(s) | 194, 877 |
| BseXI | GCAGC | 2 cut(s) | 54, 505 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BsgI | GTGCAG | 2 cut(s) | 100, 192 |
| BshFI | GGCC | 2 cut(s) | 846, 882 |
| BshNI | GGYRCC | 1 cut(s) | 819 |
| BsiHKAI | GWGCWC | 1 cut(s) | 864 |
| BsiSI | CCGG | 1 cut(s) | 813 |
| BslFI | GGGAC | 3 cut(s) | 67, 148, 515 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 755 |
| BsmAI | GTCTC | 1 cut(s) | 199 |
| BsmFI | GGGAC | 3 cut(s) | 67, 148, 515 |
| BsnI | GGCC | 2 cut(s) | 846, 882 |
| Bsp1286I | GDGCHC | 1 cut(s) | 864 |
| Bsp143I | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 863 |
| Bsp19I | CCATGG | 3 cut(s) | 463, 483, 769 |
| BspACI | CCGC | 2 cut(s) | 823, 847 |
| BspANI | GGCC | 2 cut(s) | 846, 882 |
| BspCNI | CTCAG | 2 cut(s) | 195, 876 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 5 cut(s) | 6, 164, 461, 718, 821 |
| BspMAI | CTGCAG | 2 cut(s) | 523, 714 |
| BspMI | ACCTGC | 1 cut(s) | 717 |
| BspPI | GGATC | 4 cut(s) | 197, 481, 559, 589 |
| BspT107I | GGYRCC | 1 cut(s) | 819 |
| BsrBI | CCGCTC | 1 cut(s) | 825 |
| BssECI | CCNNGG | 3 cut(s) | 463, 483, 769 |
| BssMI | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| BssSI | CACGAG | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 3 cut(s) | 463, 483, 769 |
| Bst2BI | CACGAG | 1 cut(s) | 264 |
| Bst4CI | ACNGT | 2 cut(s) | 210, 398 |
| Bst6I | CTCTTC | 2 cut(s) | 485, 749 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 2 cut(s) | 203, 863 |
| BstDSI | CCRYGG | 3 cut(s) | 463, 483, 769 |
| BstEII | GGTNACC | 1 cut(s) | 659 |
| BstF5I | GGATG | 2 cut(s) | 685, 765 |
| BstKTI | GATC | 9 cut(s) | 118, 192, 323, 476, 554, 584, 638, 691, 908 |
| BstMAI | GTCTC | 1 cut(s) | 199 |
| BstMBI | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 87, 356, 822, 843 |
| BstPI | GGTNACC | 1 cut(s) | 659 |
| BstSFI | CTRYAG | 2 cut(s) | 519, 710 |
| BstV1I | GCAGC | 2 cut(s) | 54, 505 |
| BstV2I | GAAGAC | 1 cut(s) | 768 |
| BstX2I | RGATCY | 3 cut(s) | 189, 473, 551 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 470, 776 |
| BstYI | RGATCY | 3 cut(s) | 189, 473, 551 |
| BsuRI | GGCC | 2 cut(s) | 846, 882 |
| BtgI | CCRYGG | 3 cut(s) | 463, 483, 769 |
| BtsCI | GGATG | 2 cut(s) | 685, 765 |
| BveI | ACCTGC | 1 cut(s) | 717 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 2 cut(s) | 136, 162 |
| Csp6I | GTAC | 7 cut(s) | 66, 93, 211, 296, 388, 528, 820 |
| CviQI | GTAC | 7 cut(s) | 66, 93, 211, 296, 388, 528, 820 |
| DdeI | CTNAG | 2 cut(s) | 203, 863 |
| DpnI | GATC | 9 cut(s) | 117, 191, 322, 475, 553, 583, 637, 690, 907 |
| DpnII | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| EaeI | YGGCCR | 2 cut(s) | 844, 880 |
| Eam1104I | CTCTTC | 2 cut(s) | 485, 749 |
| EarI | CTCTTC | 2 cut(s) | 485, 749 |
| Ecl136II | GAGCTC | 1 cut(s) | 862 |
| Eco130I | CCWWGG | 3 cut(s) | 463, 483, 769 |
| Eco24I | GRGCYC | 1 cut(s) | 864 |
| Eco47I | GGWCC | 2 cut(s) | 136, 162 |
| Eco53kI | GAGCTC | 1 cut(s) | 862 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco91I | GGTNACC | 1 cut(s) | 659 |
| EcoICRI | GAGCTC | 1 cut(s) | 862 |
| EcoO109I | RGGNCCY | 2 cut(s) | 136, 162 |
| EcoO65I | GGTNACC | 1 cut(s) | 659 |
| EcoT14I | CCWWGG | 3 cut(s) | 463, 483, 769 |
| EcoT22I | ATGCAT | 2 cut(s) | 604, 756 |
| EcoT38I | GRGCYC | 1 cut(s) | 864 |
| ErhI | CCWWGG | 3 cut(s) | 463, 483, 769 |
| FaqI | GGGAC | 3 cut(s) | 67, 148, 515 |
| FbaI | TGATCA | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 3 cut(s) | 43, 519, 847 |
| FokI | GGATG | 2 cut(s) | 692, 752 |
| FriOI | GRGCYC | 1 cut(s) | 864 |
| Fsp4HI | GCNGC | 3 cut(s) | 43, 519, 847 |
| FspBI | CTAG | 2 cut(s) | 57, 531 |
| GluI | GCNGC | 3 cut(s) | 43, 519, 847 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| HaeIII | GGCC | 2 cut(s) | 846, 882 |
| HapII | CCGG | 1 cut(s) | 813 |
| HinfI | GANTC | 1 cut(s) | 181 |
| HpaII | CCGG | 1 cut(s) | 813 |
| HphI | GGTGA | 3 cut(s) | 603, 671, 770 |
| Hpy166II | GTNNAC | 2 cut(s) | 102, 792 |
| Hpy188I | TCNGA | 6 cut(s) | 120, 186, 252, 799, 829, 905 |
| Hpy188III | TCNNGA | 3 cut(s) | 266, 645, 692 |
| Hpy8I | GTNNAC | 2 cut(s) | 102, 792 |
| Hpy99I | CGWCG | 3 cut(s) | 803, 833, 836 |
| HpyAV | CCTTC | 3 cut(s) | 127, 218, 432 |
| HpyCH4III | ACNGT | 2 cut(s) | 210, 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 7 cut(s) | 81, 173, 316, 521, 602, 712, 754 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 87, 356, 822, 843 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 863 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| KpnI | GGTACC | 1 cut(s) | 823 |
| Ksp22I | TGATCA | 1 cut(s) | 115 |
| Kzo9I | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| LmnI | GCTCC | 3 cut(s) | 355, 459, 830 |
| Lsp1109I | GCAGC | 2 cut(s) | 54, 505 |
| LweI | GCATC | 1 cut(s) | 589 |
| MaeI | CTAG | 2 cut(s) | 57, 531 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MaeIII | GTNAC | 2 cut(s) | 569, 659 |
| MalI | GATC | 9 cut(s) | 117, 191, 322, 475, 553, 583, 637, 690, 907 |
| MbiI | CCGCTC | 1 cut(s) | 825 |
| MboI | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| MboII | GAAGA | 9 cut(s) | 47, 289, 417, 502, 600, 695, 698, 736, 773 |
| MflI | RGATCY | 3 cut(s) | 189, 473, 551 |
| MhlI | GDGCHC | 1 cut(s) | 864 |
| MluCI | AATT | 2 cut(s) | 70, 871 |
| MmeI | TCCRAC | 2 cut(s) | 822, 852 |
| MnlI | CCTC | 9 cut(s) | 18, 153, 180, 264, 518, 746, 750, 805, 878 |
| Mph1103I | ATGCAT | 2 cut(s) | 604, 756 |
| MroXI | GAANNNNTTC | 2 cut(s) | 236, 284 |
| MseI | TTAA | 3 cut(s) | 336, 372, 913 |
| MslI | CAYNNNNRTG | 2 cut(s) | 468, 546 |
| MspA1I | CMGCKG | 2 cut(s) | 431, 518 |
| MspI | CCGG | 1 cut(s) | 813 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 87, 356, 822, 843 |
| NcoI | CCATGG | 3 cut(s) | 463, 483, 769 |
| NdeII | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 164, 461, 718, 821 |
| NmeAIII | GCCGAG | 1 cut(s) | 178 |
| NmuCI | GTSAC | 2 cut(s) | 569, 659 |
| NsiI | ATGCAT | 2 cut(s) | 604, 756 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PdmI | GAANNNNTTC | 2 cut(s) | 236, 284 |
| PfeI | GAWTC | 1 cut(s) | 181 |
| PkrI | GCNGC | 3 cut(s) | 44, 520, 848 |
| PpuMI | RGGWCCY | 2 cut(s) | 136, 162 |
| PshBI | ATTAAT | 2 cut(s) | 336, 372 |
| Psp124BI | GAGCTC | 1 cut(s) | 864 |
| Psp1406I | AACGTT | 1 cut(s) | 234 |
| Psp5II | RGGWCCY | 2 cut(s) | 136, 162 |
| PspEI | GGTNACC | 1 cut(s) | 659 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 164, 461, 718, 821 |
| PspPI | GGNCC | 2 cut(s) | 136, 162 |
| PspPPI | RGGWCCY | 2 cut(s) | 136, 162 |
| PstI | CTGCAG | 2 cut(s) | 523, 714 |
| PsuI | RGATCY | 3 cut(s) | 189, 473, 551 |
| PvuII | CAGCTG | 2 cut(s) | 431, 518 |
| RsaI | GTAC | 7 cut(s) | 67, 94, 212, 297, 389, 529, 821 |
| RsaNI | GTAC | 7 cut(s) | 66, 93, 211, 296, 388, 528, 820 |
| RseI | CAYNNNNRTG | 2 cut(s) | 468, 546 |
| SacI | GAGCTC | 1 cut(s) | 864 |
| SaqAI | TTAA | 3 cut(s) | 336, 372, 913 |
| SatI | GCNGC | 3 cut(s) | 43, 519, 847 |
| Sau3AI | GATC | 9 cut(s) | 115, 189, 320, 473, 551, 581, 635, 688, 905 |
| Sau96I | GGNCC | 2 cut(s) | 136, 162 |
| SbfI | CCTGCAGG | 1 cut(s) | 714 |
| SdaI | CCTGCAGG | 1 cut(s) | 714 |
| SduI | GDGCHC | 1 cut(s) | 864 |
| SfaNI | GCATC | 1 cut(s) | 589 |
| SfcI | CTRYAG | 2 cut(s) | 519, 710 |
| SinI | GGWCC | 2 cut(s) | 136, 162 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 468, 546 |
| SmlI | CTYRAG | 1 cut(s) | 857 |
| SmoI | CTYRAG | 1 cut(s) | 857 |
| SpeI | ACTAGT | 2 cut(s) | 56, 530 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 714 |
| Sse9I | AATT | 2 cut(s) | 70, 871 |
| SsiI | CCGC | 2 cut(s) | 823, 847 |
| SspI | AATATT | 2 cut(s) | 129, 565 |
| SspMI | CTAG | 2 cut(s) | 57, 531 |
| SstI | GAGCTC | 1 cut(s) | 864 |
| StyI | CCWWGG | 3 cut(s) | 463, 483, 769 |
| TaaI | ACNGT | 2 cut(s) | 210, 398 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TasI | AATT | 2 cut(s) | 70, 871 |
| TatI | WGTACW | 1 cut(s) | 92 |
| TauI | GCSGC | 1 cut(s) | 849 |
| TfiI | GAWTC | 1 cut(s) | 181 |
| Tru1I | TTAA | 3 cut(s) | 336, 372, 913 |
| Tru9I | TTAA | 3 cut(s) | 336, 372, 913 |
| TseFI | GTSAC | 2 cut(s) | 569, 659 |
| TseI | GCWGC | 2 cut(s) | 42, 518 |
| Tsp45I | GTSAC | 2 cut(s) | 569, 659 |
| TspDTI | ATGAA | 5 cut(s) | 48, 277, 378, 696, 708 |
| VpaK11BI | GGWCC | 2 cut(s) | 136, 162 |
| VspI | ATTAAT | 2 cut(s) | 336, 372 |
| XmnI | GAANNNNTTC | 2 cut(s) | 236, 284 |
| XspI | CTAG | 2 cut(s) | 57, 531 |
| Zsp2I | ATGCAT | 2 cut(s) | 604, 756 |