Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

27492091 .. 27494817

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGGCTACATCGCAGTTGGCAGCATTGTATATTACTGTGATCTTGTTGTCTATGAGTACTAGTACTCCAACACTAGCAGAAGTACCCATGACAAAGCCTGGTTGTTCAACGCATTGCGGAGACGTTGAAATTCCATATCCTTTTGGGATTGAACCTGGTTGTTACATTAATGAATGGTTCCTAATACTCTGCGAAAGCTCCACCGGCGTTCTCAAGCCTCTCTTGAACAGCATGCATCTGGAGGTGTGGGATATTTCTGTTGCAGGCACGATAAGGGTCACAAACCCGATCACCTTCTCTAATTGCAGCAACACCCTGGTCAACGCGGTCCGGACATTCACTCTGGAGGGAAGCCCTTTTCTGTTCTCCCAGAAAAATAGGTTTACTTCAATCGGTTGCAACGAAATTGCTCTGCTGACTTCATCAGATGGATATCCAATTCGTGGTTGCTTATCTATTTGTGATTTCACATCTTTTCATAGCAGTACTGGGAGAATACTAAACTACAACAGTTGCAGTGGTACAAACTGCTGCCAGTCCACAATTCCGCTTGATCTTTATGCCTTCAATACTAGTTTTCAGAAGTTGAATGATGTGAAGATTGGAAGTGCCTGCAATCCAGCATTCCTGGTAGACCAGGATTGGTTTATGTCAAACTCAATAAACATTTCTCCGGCTGGTGAAATATTTGACTCCATCCCTGTAGTGCTCGAATGGAGCTTATACAACTATTCGCCTCCCGCCCTTGGTGAGTATGACAGTTATGTCGAATCCTTCTACTGCGAAATAATTCAAAATAAAATGCAGCCCCAGAACATTAGTACTCGATGTTTCTGCTCACAGGGCTTTCCAGGAAATCCATATCTTTTTCAGGGATGTCAACAAGATATCGATGAGTGTGGTTCTGGAACTTTCGTAGTCCGTCGTGGGAGTCCTATCTGCCCAAGATCCTCTCCGAGTTATCTGGGACAAGCAGCAGGGCTAGGCCTTGGACTACTAATCTTCCTCATAGTGGTCGCACGGTGGTTGAACAGGGTCATAAGGAAAAGGAAACACAATAAACGCAAGCGGATGTTTTTTAAACAAAATGGTGGTTTACTGTTGCAGCAACAATCGTCTAACGGCGAAGTCCATGTTGAGAAAATTAAGTTGTTCACTTCCAAGGAGTTGCTCAAAGCCACAGACGAGTTTAATGTAAACAGAGTTCTTGGCCATGGAAGTCAAGGTACCGTTTACAAAGGAATGTTGGAAGATGGAAAAATTGTTGCTGTAAAGAAGTCCAAAATAGTTGATGGAGGCGAAGTTGGAGAGTTCATTAATGAAATTGGCATTCTTTCACAAATCAACCACAGGAATGTCGTCAAGCTATTAGGTTGTTGCTTAGAGACAGAAGTTCCTCTTTTGGTTTACGAATTCATACTCAATGGAAGCCTTTCTCAATACATTCATCATCAAAATGATTTTCGTCTCACATGGGAAATGCGCGTACGAGTTTCTATGCAAGTTGCGGGAGCTCTTTCCTACTTGCATTCATCTACTTGCTTGCCCATTTACCATCGAGACATCAAGTCCGGTAACATACTCCTGGATGATAAATTTAATGCCAAAATAGCTGATTTTGGGACTTCAAGATCCATTAGCATTGACAAAACGCATCTTACAACACTCGTAAAAGGAACATTTGGTTATCTAGATCCAGGATATTTTCAATCCAGCCAATTTACGGACAAGAGTGACGTTTATAGCTTTGGAGTGGTCCTTGTTGAGCTCTTAACTGGACAAAAACCAGTTTTCTTGACACCATCTGGAGAATGGAGTAGCCTAGCAACTCATTTCATTGAGTCCATGGAAGAAAATAGTCTGTTTGATATTATTGATGCGCGAGTTATGAAGGATGGTGGGAAGGAAGAGATCATAGCAGTTGCTAACCTTGCCAAAAGATGCTTGGATTTGAATGGAAAGAAACGTCCAACTATGAAAGAAGTAGCAGCGACGCTAGAGGAAATTCTACTGTTAGTTACTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

675

Amino Acids

74.8

Weight (kDa)

6.26

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	35 - 94	2.5e-09	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	397 - 663	4.5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	399 - 665	4.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
Acc65I	GGTACC	1 cut(s)	1226
AccB1I	GGYRCC	1 cut(s)	1226
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	3 cut(s)	326, 1485, 1882
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	6 cut(s)	117, 326, 548, 741, 1069, 1508
AclWI	GGATC	3 cut(s)	942, 1626, 1688
AcoI	YGGCCR	1 cut(s)	1210
AcsI	RAATTY	4 cut(s)	129, 1412, 1595, 2004
AfaI	GTAC	8 cut(s)	58, 64, 84, 487, 523, 823, 1228, 1488
AfiI	CCNNNNNNNGG	4 cut(s)	443, 746, 1012, 1723
AhdI	GACNNNNNGTC	1 cut(s)	1567
AhlI	ACTAGT	3 cut(s)	59, 572, 2021
AjnI	CCWGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
AluBI	AGCT	7 cut(s)	198, 720, 1366, 1514, 1613, 1746, 1768
AluI	AGCT	7 cut(s)	198, 720, 1366, 1514, 1613, 1746, 1768
Alw21I	GWGCWC	3 cut(s)	711, 1516, 1770
Alw26I	GTCTC	4 cut(s)	114, 1379, 1472, 1554
AlwI	GGATC	3 cut(s)	942, 1626, 1688
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	2 cut(s)	985, 1210
ApeKI	GCWGC	7 cut(s)	20, 306, 531, 805, 974, 1105, 1988
ApoI	RAATTY	4 cut(s)	129, 1412, 1595, 2004
AseI	ATTAAT	2 cut(s)	168, 1317
Asp700I	GAANNNNTTC	2 cut(s)	789, 1432
Asp718I	GGTACC	1 cut(s)	1226
AspLEI	GCGC	2 cut(s)	1485, 1882
AspS9I	GGNCC	2 cut(s)	328, 1756
AsuHPI	GGTGA	3 cut(s)	283, 692, 761
AvaII	GGWCC	2 cut(s)	328, 1756
BalI	TGGCCA	1 cut(s)	1212
BanI	GGYRCC	1 cut(s)	1226
BanII	GRGCYC	2 cut(s)	1516, 1770
BarI	GAAGNNNNNNTAC	2 cut(s)	1210, 1242
Bbv12I	GWGCWC	3 cut(s)	711, 1516, 1770
BbvI	GCAGC	7 cut(s)	32, 318, 518, 817, 986, 1117, 2000
BccI	CCATC	7 cut(s)	422, 704, 1247, 1286, 1563, 1810, 1889
BceAI	ACGGC	1 cut(s)	1138
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
BcoDI	GTCTC	4 cut(s)	114, 1379, 1472, 1554
BcuI	ACTAGT	3 cut(s)	59, 572, 2021
BfaI	CTAG	8 cut(s)	60, 74, 573, 983, 1691, 1823, 1997, 2022
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	7 cut(s)	21, 307, 532, 806, 975, 1106, 1989
BlsI	GCNGC	7 cut(s)	22, 308, 533, 807, 976, 1107, 1990
BmcAI	AGTACT	4 cut(s)	58, 64, 487, 823
Bme1390I	CCNGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
Bme18I	GGWCC	2 cut(s)	328, 1756
BmeRI	GACNNNNNGTC	1 cut(s)	1567
BmgT120I	GGNCC	2 cut(s)	328, 1756
BmiI	GGNNCC	2 cut(s)	179, 1228
BmrFI	CCNGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	4 cut(s)	244, 1663, 1867, 1931
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	3 cut(s)	260, 365, 1827
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	6 cut(s)	315, 745, 988, 1161, 1213, 1845
BsaWI	WCCGGW	2 cut(s)	330, 1571
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 1287, 1317
Bsc4I	CCNNNNNNNGG	4 cut(s)	443, 746, 1012, 1723
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	493, 535, 1780, 1787
Bse3DI	GCAATG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
BseCI	ATCGAT	1 cut(s)	891
BseDI	CCNNGG	6 cut(s)	315, 745, 988, 1161, 1213, 1845
BseGI	GGATG	5 cut(s)	696, 881, 1077, 1594, 1900
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	4 cut(s)	443, 746, 1012, 1723
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	4 cut(s)	493, 535, 1780, 1787
BseXI	GCAGC	7 cut(s)	32, 318, 518, 817, 986, 1117, 2000
Bsh1236I	CGCG	3 cut(s)	326, 1485, 1882
BshFI	GGCC	2 cut(s)	987, 1212
BshNI	GGYRCC	1 cut(s)	1226
BshVI	ATCGAT	1 cut(s)	891
BsiHKAI	GWGCWC	3 cut(s)	711, 1516, 1770
BsiSI	CCGG	4 cut(s)	204, 331, 674, 1572
BsiWI	CGTACG	1 cut(s)	1486
BslFI	GGGAC	2 cut(s)	981, 1636
BslI	CCNNNNNNNGG	4 cut(s)	443, 746, 1012, 1723
BsmAI	GTCTC	4 cut(s)	114, 1379, 1472, 1554
BsmBI	CGTCTC	2 cut(s)	114, 1472
BsmFI	GGGAC	2 cut(s)	981, 1636
BsmI	GAATGC	3 cut(s)	623, 1329, 1528
BsnI	GGCC	2 cut(s)	987, 1212
Bsp1286I	GDGCHC	3 cut(s)	711, 1516, 1770
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
Bsp19I	CCATGG	2 cut(s)	1213, 1845
BspACI	CCGC	6 cut(s)	117, 326, 548, 741, 1069, 1508
BspANI	GGCC	2 cut(s)	987, 1212
BspDI	ATCGAT	1 cut(s)	891
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	3 cut(s)	326, 1485, 1882
BspLI	GGNNCC	2 cut(s)	179, 1228
BspPI	GGATC	3 cut(s)	942, 1626, 1688
BspT107I	GGYRCC	1 cut(s)	1226
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	493, 535, 1780, 1787
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	6 cut(s)	315, 745, 988, 1161, 1213, 1845
BssMI	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
BssT1I	CCWWGG	5 cut(s)	745, 988, 1161, 1213, 1845
Bst2UI	CCWGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
Bst4CI	ACNGT	7 cut(s)	37, 512, 761, 1023, 1101, 1231, 2013
Bst6I	CTCTTC	1 cut(s)	1902
BstC8I	GCNNGC	5 cut(s)	233, 265, 613, 1067, 1544
BstDEI	CTNAG	1 cut(s)	1381
BstDSI	CCRYGG	2 cut(s)	1213, 1845
BstF5I	GGATG	5 cut(s)	696, 881, 1077, 1594, 1900
BstFNI	CGCG	3 cut(s)	326, 1485, 1882
BstHHI	GCGC	2 cut(s)	1485, 1882
BstKTI	GATC	7 cut(s)	42, 291, 556, 950, 1634, 1696, 1914
BstMAI	GTCTC	4 cut(s)	114, 1379, 1472, 1554
BstMBI	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 843, 1610, 1931
BstNI	CCWGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	3 cut(s)	326, 1485, 1882
BstV1I	GCAGC	7 cut(s)	32, 318, 518, 817, 986, 1117, 2000
BstX2I	RGATCY	3 cut(s)	947, 1631, 1693
BstYI	RGATCY	3 cut(s)	947, 1631, 1693
Bsu15I	ATCGAT	1 cut(s)	891
BsuRI	GGCC	2 cut(s)	987, 1212
BsuTUI	ATCGAT	1 cut(s)	891
BtgI	CCRYGG	2 cut(s)	1213, 1845
BtsCI	GGATG	5 cut(s)	696, 881, 1077, 1594, 1900
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	5 cut(s)	233, 265, 613, 1067, 1544
CfoI	GCGC	2 cut(s)	1485, 1882
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	328, 1756
ClaI	ATCGAT	1 cut(s)	891
CpoI	CGGWCCG	1 cut(s)	328
CseI	GACGC	1 cut(s)	2002
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	8 cut(s)	57, 63, 83, 486, 522, 822, 1227, 1487
CspI	CGGWCCG	1 cut(s)	328
CviAII	CATG	6 cut(s)	88, 232, 1133, 1214, 1473, 1846
CviQI	GTAC	8 cut(s)	57, 63, 83, 486, 522, 822, 1227, 1487
DdeI	CTNAG	1 cut(s)	1381
DpnI	GATC	7 cut(s)	41, 290, 555, 949, 1633, 1695, 1913
DpnII	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
DraI	TTTAAA	1 cut(s)	1081
DrdI	GACNNNNNNGTC	1 cut(s)	764
DriI	GACNNNNNGTC	1 cut(s)	1567
DseDI	GACNNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	1210
Eam1104I	CTCTTC	1 cut(s)	1902
Eam1105I	GACNNNNNGTC	1 cut(s)	1567
EarI	CTCTTC	1 cut(s)	1902
Ecl136II	GAGCTC	2 cut(s)	1514, 1768
Eco130I	CCWWGG	5 cut(s)	745, 988, 1161, 1213, 1845
Eco147I	AGGCCT	1 cut(s)	987
Eco24I	GRGCYC	2 cut(s)	1516, 1770
Eco32I	GATATC	2 cut(s)	434, 889
Eco47I	GGWCC	2 cut(s)	328, 1756
Eco53kI	GAGCTC	2 cut(s)	1514, 1768
EcoICRI	GAGCTC	2 cut(s)	1514, 1768
EcoRI	GAATTC	1 cut(s)	1412
EcoRII	CCWGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
EcoRV	GATATC	2 cut(s)	434, 889
EcoT14I	CCWWGG	5 cut(s)	745, 988, 1161, 1213, 1845
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	1516, 1770
ErhI	CCWWGG	5 cut(s)	745, 988, 1161, 1213, 1845
Esp3I	CGTCTC	2 cut(s)	114, 1472
FaeI	CATG	6 cut(s)	91, 235, 1136, 1217, 1476, 1849
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 1383, 1415
FaqI	GGGAC	2 cut(s)	981, 1636
FatI	CATG	6 cut(s)	87, 231, 1132, 1213, 1472, 1845
FauI	CCCGC	2 cut(s)	748, 1501
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	7 cut(s)	21, 307, 532, 806, 975, 1106, 1989
FokI	GGATG	5 cut(s)	683, 888, 1084, 1601, 1907
FriOI	GRGCYC	2 cut(s)	1516, 1770
Fsp4HI	GCNGC	7 cut(s)	21, 307, 532, 806, 975, 1106, 1989
FspBI	CTAG	8 cut(s)	60, 74, 573, 983, 1691, 1823, 1997, 2022
GlaI	GCGC	2 cut(s)	1484, 1881
GluI	GCNGC	7 cut(s)	21, 307, 532, 806, 975, 1106, 1989
GsuI	CTGGAG	3 cut(s)	260, 365, 1827
HaeIII	GGCC	2 cut(s)	987, 1212
HapII	CCGG	4 cut(s)	204, 331, 674, 1572
HgaI	GACGC	1 cut(s)	2002
HhaI	GCGC	2 cut(s)	1485, 1882
Hin1II	CATG	6 cut(s)	91, 235, 1136, 1217, 1476, 1849
Hin6I	GCGC	2 cut(s)	1483, 1880
HinP1I	GCGC	2 cut(s)	1483, 1880
HincII	GTYRAC	2 cut(s)	322, 881
HindII	GTYRAC	2 cut(s)	322, 881
HinfI	GANTC	4 cut(s)	692, 770, 931, 1841
HpaII	CCGG	4 cut(s)	204, 331, 674, 1572
HphI	GGTGA	3 cut(s)	283, 692, 761
Hpy188I	TCNGA	3 cut(s)	427, 582, 957
Hpy99I	CGWCG	2 cut(s)	927, 1996
HpyAV	CCTTC	5 cut(s)	304, 574, 784, 1885, 1897
HpyCH4III	ACNGT	7 cut(s)	37, 512, 761, 1023, 1101, 1231, 2013
HpyCH4IV	ACGT	3 cut(s)	123, 1737, 1966
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 843, 1610, 1931
HpyF3I	CTNAG	1 cut(s)	1381
HpySE526I	ACGT	3 cut(s)	123, 1737, 1966
Hsp92II	CATG	6 cut(s)	91, 235, 1136, 1217, 1476, 1849
HspAI	GCGC	2 cut(s)	1483, 1880
Kpn2I	TCCGGA	1 cut(s)	330
KpnI	GGTACC	1 cut(s)	1230
Kzo9I	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
LmnI	GCTCC	3 cut(s)	203, 717, 1511
Lsp1109I	GCAGC	7 cut(s)	32, 318, 518, 817, 986, 1117, 2000
LweI	GCATC	4 cut(s)	244, 1663, 1867, 1931
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	8 cut(s)	60, 74, 573, 983, 1691, 1823, 1997, 2022
MaeII	ACGT	3 cut(s)	123, 1737, 1966
MaeIII	GTNAC	5 cut(s)	161, 277, 1574, 1733, 2017
MalI	GATC	7 cut(s)	41, 290, 555, 949, 1633, 1695, 1913
MboI	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
MboII	GAAGA	5 cut(s)	610, 994, 1262, 1862, 1919
MflI	RGATCY	3 cut(s)	947, 1631, 1693
MhlI	GDGCHC	3 cut(s)	711, 1516, 1770
MlsI	TGGCCA	1 cut(s)	1212
MluNI	TGGCCA	1 cut(s)	1212
MlyI	GAGTC	3 cut(s)	686, 940, 1850
MmeI	TCCRAC	4 cut(s)	92, 1227, 1285, 1994
MnlI	CCTC	9 cut(s)	228, 235, 340, 747, 961, 1016, 1289, 1407, 1993
Mox20I	TGGCCA	1 cut(s)	1212
Mph1103I	ATGCAT	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	330
MroXI	GAANNNNTTC	2 cut(s)	789, 1432
MscI	TGGCCA	1 cut(s)	1212
MseI	TTAA	7 cut(s)	168, 1080, 1146, 1191, 1317, 1599, 1772
MslI	CAYNNNNRTG	2 cut(s)	1353, 1455
Msp20I	TGGCCA	1 cut(s)	1212
MspI	CCGG	4 cut(s)	204, 331, 674, 1572
MspR9I	CCNGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
Mva1269I	GAATGC	3 cut(s)	623, 1329, 1528
MvaI	CCWGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
MvnI	CGCG	3 cut(s)	326, 1485, 1882
MwoI	GCNNNNNNNGC	4 cut(s)	204, 843, 1610, 1931
NcoI	CCATGG	2 cut(s)	1213, 1845
NdeII	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
NlaIII	CATG	6 cut(s)	91, 235, 1136, 1217, 1476, 1849
NlaIV	GGNNCC	2 cut(s)	179, 1228
NmuCI	GTSAC	2 cut(s)	277, 1733
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	3 cut(s)	623, 1329, 1528
PdmI	GAANNNNTTC	2 cut(s)	789, 1432
PfeI	GAWTC	1 cut(s)	770
Pfl23II	CGTACG	1 cut(s)	1486
PflMI	CCANNNNNTGG	1 cut(s)	443
PfoI	TCCNGGA	3 cut(s)	850, 1584, 1696
PkrI	GCNGC	7 cut(s)	22, 308, 533, 807, 976, 1107, 1990
PleI	GAGTC	3 cut(s)	686, 939, 1849
PpsI	GAGTC	3 cut(s)	686, 939, 1849
PshBI	ATTAAT	2 cut(s)	168, 1317
Psp124BI	GAGCTC	2 cut(s)	1516, 1770
Psp6I	CCWGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
PspGI	CCWGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
PspLI	CGTACG	1 cut(s)	1486
PspN4I	GGNNCC	2 cut(s)	179, 1228
PspPI	GGNCC	2 cut(s)	328, 1756
PsrI	GAACNNNNNNTAC	2 cut(s)	1188, 1220
PsuI	RGATCY	3 cut(s)	947, 1631, 1693
RsaI	GTAC	8 cut(s)	58, 64, 84, 487, 523, 823, 1228, 1488
RsaNI	GTAC	8 cut(s)	57, 63, 83, 486, 522, 822, 1227, 1487
RseI	CAYNNNNRTG	2 cut(s)	1353, 1455
Rsr2I	CGGWCCG	1 cut(s)	328
RsrII	CGGWCCG	1 cut(s)	328
SacI	GAGCTC	2 cut(s)	1516, 1770
SaqAI	TTAA	7 cut(s)	168, 1080, 1146, 1191, 1317, 1599, 1772
SatI	GCNGC	7 cut(s)	21, 307, 532, 806, 975, 1106, 1989
Sau3AI	GATC	7 cut(s)	39, 288, 553, 947, 1631, 1693, 1911
Sau96I	GGNCC	2 cut(s)	328, 1756
ScaI	AGTACT	4 cut(s)	58, 64, 487, 823
SchI	GAGTC	3 cut(s)	686, 940, 1850
ScrFI	CCNGG	8 cut(s)	99, 156, 317, 629, 638, 852, 1586, 1698
SduI	GDGCHC	3 cut(s)	711, 1516, 1770
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	4 cut(s)	244, 1663, 1867, 1931
SfcI	CTRYAG	1 cut(s)	702
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	328, 1756
SmiMI	CAYNNNNRTG	2 cut(s)	1353, 1455
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	3 cut(s)	59, 572, 2021
SphI	GCATGC	1 cut(s)	235
SseBI	AGGCCT	1 cut(s)	987
SsiI	CCGC	6 cut(s)	117, 326, 548, 741, 1069, 1508
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	8 cut(s)	60, 74, 573, 983, 1691, 1823, 1997, 2022
SstI	GAGCTC	2 cut(s)	1516, 1770
StuI	AGGCCT	1 cut(s)	987
StyD4I	CCNGG	8 cut(s)	97, 154, 315, 627, 636, 850, 1584, 1696
StyI	CCWWGG	5 cut(s)	745, 988, 1161, 1213, 1845
TaaI	ACNGT	7 cut(s)	37, 512, 761, 1023, 1101, 1231, 2013
TaiI	ACGT	3 cut(s)	126, 1740, 1969
TaqI	TCGA	5 cut(s)	711, 768, 826, 891, 1558
TatI	WGTACW	4 cut(s)	56, 62, 485, 821
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	7 cut(s)	168, 1080, 1146, 1191, 1317, 1599, 1772
Tru9I	TTAA	7 cut(s)	168, 1080, 1146, 1191, 1317, 1599, 1772
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	277, 1733
TseI	GCWGC	7 cut(s)	20, 306, 531, 805, 974, 1105, 1988
Tsp45I	GTSAC	2 cut(s)	277, 1733
TspGWI	ACGGA	2 cut(s)	911, 1739
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	328, 1756
VspI	ATTAAT	2 cut(s)	168, 1317
XapI	RAATTY	4 cut(s)	129, 1412, 1595, 2004
XbaI	TCTAGA	1 cut(s)	1690
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1809, 1942
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	2 cut(s)	789, 1432
XspI	CTAG	8 cut(s)	60, 74, 573, 983, 1691, 1823, 1997, 2022
ZrmI	AGTACT	4 cut(s)	58, 64, 487, 823
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.