Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

85395278 .. 85395721

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTACTTCTTCCGCTGGTGTGATGAGTGCTTTTAACGGGCAGATAGGGAACTATAGCGGTTATGGATCCATGAACATGGAGAAGGGTCCTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCTGATGGAGGTGGCGGTCACGATGGTGGCTCTCACACTTCCCTTGAGCTCAGCTTTTCCTGTGAGGGCAAAGCTAGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

147

Amino Acids

15.75

Weight (kDa)

4.95

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	4 cut(s)	102, 147, 360, 439
AclWI	GGATC	4 cut(s)	63, 82, 150, 163
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	192, 287
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	276
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	200, 394, 399, 419
AluI	AGCT	4 cut(s)	200, 394, 399, 419
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	4 cut(s)	63, 82, 150, 163
Aor13HI	TCCGGA	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	214
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	35, 266, 326
AvaII	GGWCC	1 cut(s)	176
AvrII	CCTAGG	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	2 cut(s)	344, 362
BciT130I	CCWGG	1 cut(s)	278
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	3 cut(s)	180, 213, 420
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	439
BlnI	CCTAGG	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	157, 177, 437
BmrFI	CCNGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	210, 409
BseRI	GAGGAG	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	5 cut(s)	8, 55, 74, 155, 271
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	4 cut(s)	102, 147, 360, 439
BspCNI	CTCAG	2 cut(s)	209, 408
BspEI	TCCGGA	1 cut(s)	432
BspLI	GGNNCC	3 cut(s)	157, 177, 437
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	4 cut(s)	63, 82, 150, 163
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	5 cut(s)	8, 55, 74, 155, 271
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	196, 395
BstKTI	GATC	5 cut(s)	11, 58, 77, 158, 274
BstMBI	GATC	5 cut(s)	8, 55, 74, 155, 271
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	74, 155
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	2 cut(s)	74, 155
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	7 cut(s)	50, 160, 166, 232, 253, 311, 334
CviJI	RGCY	7 cut(s)	16, 200, 375, 394, 399, 419, 438
CviKI_1	RGCY	7 cut(s)	16, 200, 375, 394, 399, 419, 438
DdeI	CTNAG	2 cut(s)	196, 395
DpnI	GATC	5 cut(s)	10, 57, 76, 157, 273
DpnII	GATC	5 cut(s)	8, 55, 74, 155, 271
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	7 cut(s)	53, 163, 169, 235, 256, 314, 337
FatI	CATG	7 cut(s)	49, 159, 165, 231, 252, 310, 333
Fnu4HI	GCNGC	1 cut(s)	439
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	3 cut(s)	180, 213, 420
GluI	GCNGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	222
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	7 cut(s)	53, 163, 169, 235, 256, 314, 337
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	35, 266, 326
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	2 cut(s)	365, 433
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	4, 83, 310
HpyF3I	CTNAG	2 cut(s)	196, 395
Hsp92II	CATG	7 cut(s)	53, 163, 169, 235, 256, 314, 337
Kpn2I	TCCGGA	1 cut(s)	432
Kzo9I	GATC	5 cut(s)	8, 55, 74, 155, 271
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	6 cut(s)	90, 99, 186, 263, 290, 418
MaeI	CTAG	3 cut(s)	180, 213, 420
MaeIII	GTNAC	2 cut(s)	34, 362
MalI	GATC	5 cut(s)	10, 57, 76, 157, 273
MboI	GATC	5 cut(s)	8, 55, 74, 155, 271
MboII	GAAGA	4 cut(s)	69, 90, 281, 349
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	2 cut(s)	74, 155
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	6 cut(s)	46, 197, 257, 310, 347, 403
MroI	TCCGGA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	2 cut(s)	66, 123
MslI	CAYNNNNRTG	2 cut(s)	164, 369
MspA1I	CMGCKG	3 cut(s)	104, 200, 441
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	278
NdeII	GATC	5 cut(s)	8, 55, 74, 155, 271
NlaIII	CATG	7 cut(s)	53, 163, 169, 235, 256, 314, 337
NlaIV	GGNNCC	3 cut(s)	157, 177, 437
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	157, 177, 437
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
PsuI	RGATCY	2 cut(s)	74, 155
PvuII	CAGCTG	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	164, 369
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	66, 123
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	5 cut(s)	8, 55, 74, 155, 271
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	6 cut(s)	88, 202, 358, 396, 401, 421
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	164, 369
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	102, 147, 360, 439
SspMI	CTAG	3 cut(s)	180, 213, 420
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	1 cut(s)	40
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	66, 123
Tru9I	TTAA	2 cut(s)	66, 123
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	176, 241, 248, 350
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	3 cut(s)	180, 213, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.