Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 83 |
| AclWI | GGATC | 1 cut(s) | 183 |
| AgsI | TTSAA | 1 cut(s) | 37 |
| AjnI | CCWGG | 3 cut(s) | 119, 138, 150 |
| AluBI | AGCT | 4 cut(s) | 11, 24, 157, 169 |
| AluI | AGCT | 4 cut(s) | 11, 24, 157, 169 |
| AlwI | GGATC | 1 cut(s) | 183 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 145 |
| AoxI | GGCC | 1 cut(s) | 191 |
| ApeKI | GCWGC | 2 cut(s) | 113, 116 |
| AsuHPI | GGTGA | 2 cut(s) | 117, 170 |
| BbvI | GCAGC | 2 cut(s) | 100, 128 |
| BciT130I | CCWGG | 3 cut(s) | 121, 140, 152 |
| BfaI | CTAG | 1 cut(s) | 202 |
| BfmI | CTRYAG | 1 cut(s) | 114 |
| BfuAI | ACCTGC | 1 cut(s) | 83 |
| BisI | GCNGC | 2 cut(s) | 114, 117 |
| BlsI | GCNGC | 2 cut(s) | 115, 118 |
| Bme1390I | CCNGG | 3 cut(s) | 121, 140, 152 |
| BmiI | GGNNCC | 1 cut(s) | 56 |
| BmrFI | CCNGG | 3 cut(s) | 121, 140, 152 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 2 cut(s) | 139, 181 |
| Bse1I | ACTGG | 1 cut(s) | 56 |
| BseBI | CCWGG | 3 cut(s) | 121, 140, 152 |
| BseDI | CCNNGG | 2 cut(s) | 139, 181 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseNI | ACTGG | 1 cut(s) | 56 |
| BseXI | GCAGC | 2 cut(s) | 100, 128 |
| BseYI | CCCAGC | 1 cut(s) | 169 |
| BshFI | GGCC | 1 cut(s) | 193 |
| BsnI | GGCC | 1 cut(s) | 193 |
| Bsp143I | GATC | 2 cut(s) | 17, 175 |
| BspANI | GGCC | 1 cut(s) | 193 |
| BspCNI | CTCAG | 1 cut(s) | 138 |
| BspLI | GGNNCC | 1 cut(s) | 56 |
| BspMAI | CTGCAG | 1 cut(s) | 118 |
| BspMI | ACCTGC | 1 cut(s) | 83 |
| BspPI | GGATC | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 56 |
| BssECI | CCNNGG | 2 cut(s) | 139, 181 |
| BssMI | GATC | 2 cut(s) | 17, 175 |
| BssT1I | CCWWGG | 1 cut(s) | 181 |
| Bst2UI | CCWGG | 3 cut(s) | 121, 140, 152 |
| BstDEI | CTNAG | 1 cut(s) | 146 |
| BstEII | GGTNACC | 1 cut(s) | 123 |
| BstKTI | GATC | 2 cut(s) | 20, 178 |
| BstMBI | GATC | 2 cut(s) | 17, 175 |
| BstNI | CCWGG | 3 cut(s) | 121, 140, 152 |
| BstPI | GGTNACC | 1 cut(s) | 123 |
| BstSCI | CCNGG | 3 cut(s) | 119, 138, 150 |
| BstSFI | CTRYAG | 1 cut(s) | 114 |
| BstV1I | GCAGC | 2 cut(s) | 100, 128 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 169 |
| BsuRI | GGCC | 1 cut(s) | 193 |
| BveI | ACCTGC | 1 cut(s) | 83 |
| CaiI | CAGNNNCTG | 1 cut(s) | 145 |
| DdeI | CTNAG | 1 cut(s) | 146 |
| DpnI | GATC | 2 cut(s) | 19, 177 |
| DpnII | GATC | 2 cut(s) | 17, 175 |
| Eco130I | CCWWGG | 1 cut(s) | 181 |
| Eco91I | GGTNACC | 1 cut(s) | 123 |
| EcoO65I | GGTNACC | 1 cut(s) | 123 |
| EcoRII | CCWGG | 3 cut(s) | 119, 138, 150 |
| EcoT14I | CCWWGG | 1 cut(s) | 181 |
| ErhI | CCWWGG | 1 cut(s) | 181 |
| FaiI | YATR | 1 cut(s) | 99 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 117 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 117 |
| FspBI | CTAG | 1 cut(s) | 202 |
| GluI | GCNGC | 2 cut(s) | 114, 117 |
| GsaI | CCCAGC | 1 cut(s) | 173 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HaeIII | GGCC | 1 cut(s) | 193 |
| HinfI | GANTC | 1 cut(s) | 135 |
| HphI | GGTGA | 2 cut(s) | 117, 170 |
| Hpy166II | GTNNAC | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 1 cut(s) | 147 |
| Hpy8I | GTNNAC | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 2 cut(s) | 92, 116 |
| HpyF3I | CTNAG | 1 cut(s) | 146 |
| Kzo9I | GATC | 2 cut(s) | 17, 175 |
| LmnI | GCTCC | 3 cut(s) | 16, 60, 154 |
| Lsp1109I | GCAGC | 2 cut(s) | 100, 128 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 1 cut(s) | 202 |
| MaeIII | GTNAC | 1 cut(s) | 123 |
| MalI | GATC | 2 cut(s) | 19, 177 |
| MboI | GATC | 2 cut(s) | 17, 175 |
| MluCI | AATT | 1 cut(s) | 60 |
| MnlI | CCTC | 1 cut(s) | 50 |
| MspR9I | CCNGG | 3 cut(s) | 121, 140, 152 |
| MvaI | CCWGG | 3 cut(s) | 121, 140, 152 |
| NdeII | GATC | 2 cut(s) | 17, 175 |
| NlaIV | GGNNCC | 1 cut(s) | 56 |
| NmuCI | GTSAC | 1 cut(s) | 123 |
| PfeI | GAWTC | 1 cut(s) | 135 |
| PkrI | GCNGC | 2 cut(s) | 115, 118 |
| Psp6I | CCWGG | 3 cut(s) | 119, 138, 150 |
| PspEI | GGTNACC | 1 cut(s) | 123 |
| PspFI | CCCAGC | 1 cut(s) | 169 |
| PspGI | CCWGG | 3 cut(s) | 119, 138, 150 |
| PspN4I | GGNNCC | 1 cut(s) | 56 |
| PstI | CTGCAG | 1 cut(s) | 118 |
| PstNI | CAGNNNCTG | 1 cut(s) | 145 |
| SatI | GCNGC | 2 cut(s) | 114, 117 |
| Sau3AI | GATC | 2 cut(s) | 17, 175 |
| ScrFI | CCNGG | 3 cut(s) | 121, 140, 152 |
| SetI | ASST | 8 cut(s) | 13, 26, 42, 97, 125, 159, 171, 183 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SfcI | CTRYAG | 1 cut(s) | 114 |
| Sse9I | AATT | 1 cut(s) | 60 |
| SspMI | CTAG | 1 cut(s) | 202 |
| StyD4I | CCNGG | 3 cut(s) | 119, 138, 150 |
| StyI | CCWWGG | 1 cut(s) | 181 |
| TasI | AATT | 1 cut(s) | 60 |
| TfiI | GAWTC | 1 cut(s) | 135 |
| TseFI | GTSAC | 1 cut(s) | 123 |
| TseI | GCWGC | 2 cut(s) | 113, 116 |
| Tsp45I | GTSAC | 1 cut(s) | 123 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 127 |
| XspI | CTAG | 1 cut(s) | 202 |