Prupe.4G218800_v2.0.a1

Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'-phosphate (PLP), the active form of vitamin B6

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
13761822 .. 13765117
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G218800.1

Sequence Viewer

Length: 879 bp
ATGATGGGTGCAAATAGACACCACAAGGTGCAGGAAGAAGAAACCCAATGGCCTTACGTTTATCATATGAACCCCACAACTTCACACTTCACAGAAACCAGGACCAAGGCCCAGGAAGAAGAAACCCAATACACAGCTTGCATGGCTGCTCCAGCTGTCGAAAACGCCGCCGTTTCGGCGCTCCGGTCGGTCATGCTCCGAGTCCGGCACGCTGCGGAGCGGTCGGGTCGGAATCCGGGTCAGGTGAGGGTAGTAGCGGTGTCGAAGACTAAGCCCGTTTCTCTCATCCGCCAAGTATACGACGTCGGCCACCGTCGTTTTGGCGAGAATTACGTCCAGGAAATCCTCGACAAAGCTCCTCAGCTTCCTGAAGACATAGAATGGCATTTTGTTGGGCATTTGCAGAGCAACAAAGCGAAATTGCTTCTGGCTGGAGTCCCGAATCTGGCCTTGGTTGAGGGCGTAGATAATGAGAAGATTGCAAACCATCTTGATCGAGCAGTGTCAAACCTTGGTAGAAATCCTTTAAAGGTCTTGGTCCAAGTAAATACCAGTGGAGAAGTATCCAAATCTGGTATCGATCCTTCTGGTTGTGTTGAACTTGCGAAACATGTCAAATTTCGGTGCCCAAATCTACAGTTTTCTGGCTTAATGACAATAGGGATGCCAGACTATACATCAACTCCAGAAAACTTCAGGATGCTATCAAAGTGTAGAGCTCAGGTCTGCAAGGCGCTTGATATGGCTGAGGAGCACTGTGAGCTATCAATGGGCATGTCTGGTGACTTTGAACAAGCGATTGAAATGGGCAGCACCAATGTCAGAATTGGATCCACCATATTCGGGCCGAGGGATTATGCAAAGAAGCAACCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

32.5

Weight (kDa)

7.17

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26860 AT4G26860
fragaria_vesca FvH4_3g23210
malus_domestica MD03G1196600.v1.1
prunus_persica Prupe.4G218800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040871
rosa_laevigata RLG00000034010
rosa_roxburghii Rroxscaffold_1G00039830
rosa_rugosa Rorug05G0188200
rosa_samantha Rh5AG273900 Rh5BG278900
rosa_wichuraiana Rw5G025740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 624
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 297
AciI CCGC 5 cut(s) 168, 215, 220, 257, 289
AclWI GGATC 3 cut(s) 575, 825, 838
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 2 cut(s) 390, 679
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 445, 843
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 599, 791, 803
AjnI CCWGG 3 cut(s) 98, 111, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 6 cut(s) 137, 155, 356, 364, 719, 763
AluI AGCT 6 cut(s) 137, 155, 356, 364, 719, 763
Alw21I GWGCWC 2 cut(s) 721, 756
AlwI GGATC 3 cut(s) 575, 825, 838
AoxI GGCC 5 cut(s) 50, 108, 307, 447, 845
ApeKI GCWGC 3 cut(s) 146, 212, 810
ApoI RAATTY 1 cut(s) 617
AspLEI GCGC 2 cut(s) 181, 736
AspS9I GGNCC 4 cut(s) 102, 109, 538, 845
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 256, 794
AvaII GGWCC 2 cut(s) 102, 538
BaeGI GKGCMC 1 cut(s) 629
BamHI GGATCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 721
BarI GAAGNNNNNNTAC 2 cut(s) 568, 600
BbsI GAAGAC 2 cut(s) 272, 378
Bbv12I GWGCWC 2 cut(s) 721, 756
BbvCI CCTCAGC 2 cut(s) 360, 747
BbvI GCAGC 3 cut(s) 133, 199, 822
BccI CCATC 1 cut(s) 495
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 3 cut(s) 100, 113, 338
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 635
BfoI RGCGCY 2 cut(s) 182, 737
BfuI GTATCC 1 cut(s) 574
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 4 cut(s) 147, 168, 213, 811
BlsI GCNGC 4 cut(s) 148, 169, 214, 812
Bme1390I CCNGG 4 cut(s) 100, 113, 237, 338
Bme18I GGWCC 2 cut(s) 102, 538
BmgT120I GGNCC 4 cut(s) 102, 109, 538, 845
BmiI GGNNCC 2 cut(s) 626, 832
BmrFI CCNGG 4 cut(s) 100, 113, 237, 338
BmsI GCATC 2 cut(s) 654, 690
BpiI GAAGAC 2 cut(s) 272, 378
BpmI CTGGAG 3 cut(s) 135, 453, 669
Bpu10I CCTNAGC 3 cut(s) 360, 720, 747
BpuMI CCSGG 1 cut(s) 237
Bsa29I ATCGAT 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 5 cut(s) 105, 111, 450, 511, 848
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 843
Bse1I ACTGG 1 cut(s) 552
BseBI CCWGG 3 cut(s) 100, 113, 338
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 5 cut(s) 105, 111, 450, 511, 848
BseGI GGATG 3 cut(s) 285, 669, 705
BseLI CCNNNNNNNGG 2 cut(s) 445, 843
BseMII CTCAG 3 cut(s) 374, 734, 738
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 2 cut(s) 348, 764
BseSI GKGCMC 1 cut(s) 629
BseXI GCAGC 3 cut(s) 133, 199, 822
BsgI GTGCAG 1 cut(s) 50
Bsh1285I CGRYCG 2 cut(s) 188, 224
BshFI GGCC 5 cut(s) 52, 110, 309, 449, 847
BshNI GGYRCC 1 cut(s) 624
BshVI ATCGAT 1 cut(s) 579
BsiEI CGRYCG 2 cut(s) 188, 224
BsiHKAI GWGCWC 2 cut(s) 721, 756
BsiSI CCGG 3 cut(s) 184, 205, 236
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 445, 843
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 5 cut(s) 52, 110, 309, 449, 847
Bsp1286I GDGCHC 3 cut(s) 629, 721, 756
Bsp143I GATC 3 cut(s) 493, 580, 830
BspACI CCGC 5 cut(s) 168, 215, 220, 257, 289
BspANI GGCC 5 cut(s) 52, 110, 309, 449, 847
BspCNI CTCAG 3 cut(s) 373, 733, 739
BspDI ATCGAT 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 626, 832
BspPI GGATC 3 cut(s) 575, 825, 838
BspT107I GGYRCC 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 5 cut(s) 105, 111, 450, 511, 848
BssMI GATC 3 cut(s) 493, 580, 830
BssNAI GTATAC 1 cut(s) 298
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 3 cut(s) 105, 450, 511
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 100, 113, 338
Bst4CI ACNGT 3 cut(s) 314, 639, 758
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 139, 210
BstDEI CTNAG 4 cut(s) 270, 360, 720, 747
BstF5I GGATG 3 cut(s) 285, 669, 705
BstH2I RGCGCY 2 cut(s) 182, 737
BstHHI GCGC 2 cut(s) 181, 736
BstKTI GATC 3 cut(s) 496, 583, 833
BstMBI GATC 3 cut(s) 493, 580, 830
BstMCI CGRYCG 2 cut(s) 188, 224
BstMWI GCNNNNNNNGC 4 cut(s) 143, 152, 176, 760
BstNI CCWGG 3 cut(s) 100, 113, 338
BstNSI RCATGY 2 cut(s) 614, 778
BstSCI CCNGG 4 cut(s) 98, 111, 235, 336
BstSFI CTRYAG 1 cut(s) 635
BstSLI GKGCMC 1 cut(s) 629
BstV1I GCAGC 3 cut(s) 133, 199, 822
BstV2I GAAGAC 2 cut(s) 272, 378
BstX2I RGATCY 1 cut(s) 830
BstYI RGATCY 1 cut(s) 830
BstZ17I GTATAC 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 579
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 5 cut(s) 52, 110, 309, 449, 847
BsuTUI ATCGAT 1 cut(s) 579
BtsCI GGATG 3 cut(s) 285, 669, 705
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 3 cut(s) 507, 559, 754
Cac8I GCNNGC 2 cut(s) 139, 210
CfoI GCGC 2 cut(s) 181, 736
Cfr13I GGNCC 4 cut(s) 102, 109, 538, 845
ClaI ATCGAT 1 cut(s) 579
CviAII CATG 4 cut(s) 142, 193, 611, 775
DdeI CTNAG 4 cut(s) 270, 360, 720, 747
DpnI GATC 3 cut(s) 495, 582, 832
DpnII GATC 3 cut(s) 493, 580, 830
DraI TTTAAA 1 cut(s) 528
DraIII CACNNNGTG 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 307
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 719
Eco130I CCWWGG 3 cut(s) 105, 450, 511
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 102, 538
Eco53kI GAGCTC 1 cut(s) 719
Eco57I CTGAAG 2 cut(s) 390, 679
EcoICRI GAGCTC 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 98, 111, 336
EcoT14I CCWWGG 3 cut(s) 105, 450, 511
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 3 cut(s) 105, 450, 511
FaeI CATG 4 cut(s) 145, 196, 614, 778
FaqI GGGAC 1 cut(s) 422
FatI CATG 4 cut(s) 141, 192, 610, 774
FauNDI CATATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 147, 168, 213, 811
FokI GGATG 3 cut(s) 272, 676, 712
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 4 cut(s) 147, 168, 213, 811
GlaI GCGC 2 cut(s) 180, 735
GluI GCNGC 4 cut(s) 147, 168, 213, 811
GsuI CTGGAG 3 cut(s) 135, 453, 669
HaeII RGCGCY 2 cut(s) 182, 737
HaeIII GGCC 5 cut(s) 52, 110, 309, 449, 847
HapII CCGG 3 cut(s) 184, 205, 236
HhaI GCGC 2 cut(s) 181, 736
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 4 cut(s) 145, 196, 614, 778
Hin6I GCGC 2 cut(s) 179, 734
HinP1I GCGC 2 cut(s) 179, 734
HinfI GANTC 4 cut(s) 201, 232, 435, 442
HpaII CCGG 3 cut(s) 184, 205, 236
HphI GGTGA 2 cut(s) 256, 794
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 200, 231, 824
Hpy188III TCNNGA 5 cut(s) 368, 439, 491, 686, 697
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 3 cut(s) 305, 308, 318
HpyAV CCTTC 1 cut(s) 594
HpyCH4III ACNGT 3 cut(s) 314, 639, 758
HpyCH4IV ACGT 3 cut(s) 57, 303, 333
HpyCH4V TGCA 7 cut(s) 11, 31, 141, 403, 482, 729, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 152, 176, 760
HpyF3I CTNAG 4 cut(s) 270, 360, 720, 747
HpySE526I ACGT 3 cut(s) 57, 303, 333
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 4 cut(s) 145, 196, 614, 778
HspAI GCGC 2 cut(s) 179, 734
Kzo9I GATC 3 cut(s) 493, 580, 830
LmnI GCTCC 6 cut(s) 154, 186, 201, 217, 361, 751
Lsp1109I GCAGC 3 cut(s) 133, 199, 822
LweI GCATC 2 cut(s) 654, 690
MaeII ACGT 3 cut(s) 57, 303, 333
MaeIII GTNAC 1 cut(s) 782
MalI GATC 3 cut(s) 495, 582, 832
MbiI CCGCTC 1 cut(s) 220
MboI GATC 3 cut(s) 493, 580, 830
MboII GAAGA 7 cut(s) 47, 50, 128, 131, 277, 383, 487
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 3 cut(s) 629, 721, 756
MluCI AATT 4 cut(s) 328, 419, 617, 825
MlyI GAGTC 2 cut(s) 210, 444
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 6 cut(s) 240, 356, 369, 451, 742, 843
MseI TTAA 2 cut(s) 527, 650
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 3 cut(s) 184, 205, 236
MspR9I CCNGG 4 cut(s) 100, 113, 237, 338
MvaI CCWGG 3 cut(s) 100, 113, 338
MwoI GCNNNNNNNGC 4 cut(s) 143, 152, 176, 760
NciI CCSGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 66
NdeII GATC 3 cut(s) 493, 580, 830
NlaIII CATG 4 cut(s) 145, 196, 614, 778
NlaIV GGNNCC 2 cut(s) 626, 832
NmeAIII GCCGAG 1 cut(s) 873
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 2 cut(s) 614, 778
PciI ACATGT 1 cut(s) 610
PfeI GAWTC 2 cut(s) 232, 442
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 4 cut(s) 148, 169, 214, 812
PleI GAGTC 2 cut(s) 209, 443
PpsI GAGTC 2 cut(s) 209, 443
PscI ACATGT 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 721
Psp6I CCWGG 3 cut(s) 98, 111, 336
PspGI CCWGG 3 cut(s) 98, 111, 336
PspN4I GGNNCC 2 cut(s) 626, 832
PspPI GGNCC 4 cut(s) 102, 109, 538, 845
PsuI RGATCY 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 721
SaqAI TTAA 2 cut(s) 527, 650
SatI GCNGC 4 cut(s) 147, 168, 213, 811
Sau3AI GATC 3 cut(s) 493, 580, 830
Sau96I GGNCC 4 cut(s) 102, 109, 538, 845
SchI GAGTC 2 cut(s) 210, 444
ScrFI CCNGG 4 cut(s) 100, 113, 237, 338
SduI GDGCHC 3 cut(s) 629, 721, 756
SfaNI GCATC 2 cut(s) 654, 690
SfcI CTRYAG 1 cut(s) 635
SinI GGWCC 2 cut(s) 102, 538
Sse9I AATT 4 cut(s) 328, 419, 617, 825
SsiI CCGC 5 cut(s) 168, 215, 220, 257, 289
SstI GAGCTC 1 cut(s) 721
StyD4I CCNGG 4 cut(s) 98, 111, 235, 336
StyI CCWWGG 3 cut(s) 105, 450, 511
TaaI ACNGT 3 cut(s) 314, 639, 758
TaiI ACGT 3 cut(s) 60, 306, 336
TaqI TCGA 5 cut(s) 159, 263, 348, 496, 579
TaqII GACCGA 1 cut(s) 178
TasI AATT 4 cut(s) 328, 419, 617, 825
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 232, 442
Tru1I TTAA 2 cut(s) 527, 650
Tru9I TTAA 2 cut(s) 527, 650
TscAI CASTG 3 cut(s) 507, 559, 761
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 3 cut(s) 146, 212, 810
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 3 cut(s) 507, 559, 761
VpaK11BI GGWCC 2 cut(s) 102, 538
XapI RAATTY 1 cut(s) 617
XceI RCATGY 2 cut(s) 614, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 297
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.