Prupe.4G256400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
18017475 .. 18017813
339 bp
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UTR
Exon/CDS
Intron
Prupe.4G256400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 339 bp
ATGGGAACAAGAACAAGAAGCTTTCGTGATGAAGACTACAATAATAGAAGGGTGTTCCTCAGGAGCTATCCTCTGGACTGGGAATTAGGAGGAGGAGATCAAAATGATAAAGAAGCTGGTGGTGACGCGTCGACAGATGAGATGAGGAGGTCCAAGAGGAGCAATAAGGACTGCAGCAGCAGATCAAAGAAGCCCCTGAGAAAGATAATTCTGGCTTTGTATCATTGGGGTGGAGGGAAGGTCTTGGTGTTGAGGAGGTTCAAACATAAACTTACTATTTATGTTATTTCGTGTATCCCTGTTGGCTTTAAGCCCCCTACAGCCCTCATTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.8

Weight (kDa)

10.12

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g28341
malus_domestica MD03G1170500.v1.1
prunus_persica Prupe.4G256400_v2.0.a1
rosa_samantha Rh5AG339400 Rh5BG349300 Rh5CG376200 Rh5DG362200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 131
AccII CGCG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 3 cut(s) 21, 66, 116
AluI AGCT 3 cut(s) 21, 66, 116
ApeKI GCWGC 2 cut(s) 174, 177
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 186, 189
BciVI GTATCC 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 172, 318
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 2 cut(s) 175, 178
BlsI GCNGC 2 cut(s) 176, 179
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 55, 87
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 73, 188
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 5 cut(s) 105, 108, 160, 172, 268
BseXI GCAGC 2 cut(s) 186, 189
Bsh1236I CGCG 1 cut(s) 128
Bsp143I GATC 2 cut(s) 97, 182
BspCNI CTCAG 2 cut(s) 72, 189
BspFNI CGCG 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 83
BssMI GATC 2 cut(s) 97, 182
BstDEI CTNAG 2 cut(s) 59, 197
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 2 cut(s) 100, 185
BstMBI GATC 2 cut(s) 97, 182
BstSFI CTRYAG 2 cut(s) 172, 318
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 186, 189
BstV2I GAAGAC 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 2 cut(s) 117, 134
CviJI RGCY 8 cut(s) 21, 66, 116, 193, 215, 306, 313, 323
CviKI_1 RGCY 8 cut(s) 21, 66, 116, 193, 215, 306, 313, 323
DdeI CTNAG 2 cut(s) 59, 197
DpnI GATC 2 cut(s) 99, 184
DpnII GATC 2 cut(s) 97, 182
Eco47I GGWCC 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 59
FaiI YATR 2 cut(s) 267, 282
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 175, 178
Fsp4HI GCNGC 2 cut(s) 175, 178
GluI GCNGC 2 cut(s) 175, 178
HgaI GACGC 2 cut(s) 117, 134
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 19
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 26, 61, 74
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 42, 232
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 59, 197
Kzo9I GATC 2 cut(s) 97, 182
LmnI GCTCC 2 cut(s) 63, 159
LpnPI CCDG 7 cut(s) 46, 59, 64, 102, 197, 209, 312
Lsp1109I GCAGC 2 cut(s) 186, 189
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 99, 184
MboI GATC 2 cut(s) 97, 182
MboII GAAGA 1 cut(s) 44
MluCI AATT 2 cut(s) 83, 207
MluI ACGCGT 1 cut(s) 126
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 228
MvnI CGCG 1 cut(s) 128
NdeII GATC 2 cut(s) 97, 182
NmuCI GTSAC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 176, 179
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 228
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 175, 178
Sau3AI GATC 2 cut(s) 97, 182
Sau96I GGNCC 1 cut(s) 150
SetI ASST 6 cut(s) 23, 68, 118, 152, 243, 260
SfcI CTRYAG 2 cut(s) 172, 318
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 2 cut(s) 83, 207
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 83, 207
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 174, 177
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.