Prupe.5G014000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018310
Physical Location & Seq
Reverse (-)
1518146 .. 1518427
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G014000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 282 bp
ATGACACCCACAACCATCATGGTATCCTTTTTTATGGTTGCCCTCCTTCTAGGCCAAAACTCTGATTTGGTAGCAGCATCAAGGCCACTACATCTACATACACATCCTCCAGCCATACATATAGGATCCTTGAACAAGCCAATACCTCCTTCCATTGGGCGGTTTACTATAAACCGCTACAAGATGACTGAGTCGTCGTCAGGCGCTGATGCCTTCCGGCCAACTAGTCCCGGCCATAGTCCTGGCGTTGGCCATCAAGATCCACCTGGTGCACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.86

Weight (kDa)

9.69

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31670 AT2G35612
fragaria_vesca FvH4_5g24910
prunus_persica Prupe.5G014000_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00244440
rosa_samantha Rh7AG287900 Rh7BG279700 Rh7CG307700 Rh7DG291200
rosa_wichuraiana Rw7G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
AciI CCGC 2 cut(s) 160, 175
AclWI GGATC 3 cut(s) 120, 133, 254
AcoI YGGCCR 3 cut(s) 218, 232, 250
AdeI CACNNNGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 155, 159, 248
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 2 cut(s) 241, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AleI CACNNNNGTG 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 270
AlwI GGATC 3 cut(s) 120, 133, 254
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 5 cut(s) 52, 83, 218, 232, 250
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 252
BamHI GGATCC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 23, 261
BciT130I CCWGG 2 cut(s) 243, 267
BciVI GTATCC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 231
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 50, 225
BfoI RGCGCY 1 cut(s) 207
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 231, 243, 267
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 3 cut(s) 231, 243, 267
BmsI GCATC 2 cut(s) 86, 199
BpmI CTGGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 159, 248
BseBI CCWGG 2 cut(s) 243, 267
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 155, 159, 248
BseMII CTCAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 5 cut(s) 54, 85, 220, 234, 252
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 217, 231
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 155, 159, 248
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 5 cut(s) 54, 85, 220, 234, 252
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 125, 259
BspACI CCGC 2 cut(s) 160, 175
BspANI GGCC 5 cut(s) 54, 85, 220, 234, 252
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 3 cut(s) 120, 133, 254
BssMI GATC 2 cut(s) 125, 259
Bst2UI CCWGG 2 cut(s) 243, 267
Bst4CI ACNGT 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 128, 262
BstMBI GATC 2 cut(s) 125, 259
BstNI CCWGG 2 cut(s) 243, 267
BstSCI CCNGG 3 cut(s) 229, 241, 265
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 125, 259
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 2 cut(s) 125, 259
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 5 cut(s) 54, 85, 220, 234, 252
BtsCI GGATG 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 265
CviAII CATG 1 cut(s) 19
CviJI RGCY 7 cut(s) 54, 85, 113, 139, 220, 234, 252
CviKI_1 RGCY 7 cut(s) 54, 85, 113, 139, 220, 234, 252
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 127, 261
DpnII GATC 2 cut(s) 125, 259
DraIII CACNNNGTG 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
EaeI YGGCCR 3 cut(s) 218, 232, 250
EcoRII CCWGG 2 cut(s) 241, 265
FaeI CATG 1 cut(s) 22
FaiI YATR 8 cut(s) 20, 35, 99, 116, 120, 122, 170, 237
FaqI GGGAC 1 cut(s) 213
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 50, 225
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 5 cut(s) 54, 85, 220, 234, 252
HapII CCGG 2 cut(s) 217, 231
HhaI GCGC 1 cut(s) 206
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 1 cut(s) 191
HpaII CCGG 2 cut(s) 217, 231
Hpy166II GTNNAC 2 cut(s) 165, 272
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 165, 272
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 56, 159, 223
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 125, 259
LpnPI CCDG 7 cut(s) 123, 186, 228, 230, 244, 252, 255
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 86, 199
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 2 cut(s) 50, 225
MalI GATC 2 cut(s) 127, 261
MboI GATC 2 cut(s) 125, 259
MflI RGATCY 2 cut(s) 125, 259
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 252
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 3 cut(s) 53, 117, 156
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 2 cut(s) 217, 231
MspR9I CCNGG 3 cut(s) 231, 243, 267
MvaI CCWGG 2 cut(s) 243, 267
NciI CCSGG 1 cut(s) 231
NdeII GATC 2 cut(s) 125, 259
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 241, 265
PspGI CCWGG 2 cut(s) 241, 265
PspN4I GGNNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 125, 259
PsyI GACNNNGTC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 277
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 125, 259
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 3 cut(s) 231, 243, 267
SduI GDGCHC 1 cut(s) 274
SetI ASST 2 cut(s) 148, 268
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 2 cut(s) 86, 199
SmiMI CAYNNNNRTG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 224
SsiI CCGC 2 cut(s) 160, 175
SspMI CTAG 2 cut(s) 50, 225
StyD4I CCNGG 3 cut(s) 229, 241, 265
TaaI ACNGT 1 cut(s) 279
TseI GCWGC 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 190
VneI GTGCAC 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 2 cut(s) 50, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.