Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0020367

Physical Location & Seq

Genomic Coordinates Reverse (-)

4489088 .. 4492139

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G040800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTTCGAAATGAGTACATTGGTACCACACCATACATATCATGTTTGCCTTCTCTCCGTCACCATAGACTCTGTCCTAGTGATCAGTTCTTAATCCTCTCGTCTGATGGTTTGTATCAGTATTTTAGCAATCAGGAAGTAGTTTCTCATGTTGAAAATTTTATGGAGAAGTTCCCAGATGGAGACCCTGCACAACACCTGATAGAGGAGCTTCTTTTCCGTGCTGCAAAGAAAGCTGGAATGGATTTCCATGAATTACTGGACATCCCACAAGGAGACCGCAGGAAGTACCATGACGATGTCACCGTTATGGTTATATCGCTTGAAGGAAGAATTTGGAAGTCATCAGGAAAGTACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043168 GO:0044464 GO:0048507 GO:0048532 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0080090 GO:0098727 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

121

Amino Acids

13.98

Weight (kDa)

5.81

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020367)

Species	Orthologous Gene IDs
malus_domestica	MD03G1095000.v1.1
prunus_persica	Prupe.5G040800_v2.0.a1
rosa_multiflora	Rmu_co8174702.1_g000001 Rmu_sc0009521.1_g000002
rosa_samantha	Rh6AG120300 Rh6BG113600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	157, 333
AfaI	GTAC	4 cut(s)	17, 25, 290, 356
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	155, 326
AluBI	AGCT	2 cut(s)	211, 236
AluI	AGCT	2 cut(s)	211, 236
Alw26I	GTCTC	2 cut(s)	177, 270
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	157, 333
Asp718I	GGTACC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	53, 295
AsuII	TTCGAA	1 cut(s)	7
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BanI	GGYRCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	101, 173
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	177, 270
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	7
BsaI	GGTCTC	2 cut(s)	177, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	177, 270
Bso31I	GGTCTC	2 cut(s)	177, 270
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	2 cut(s)	177, 270
BsrI	ACTGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	177, 270
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	16, 24, 289, 355
CviAII	CATG	4 cut(s)	42, 149, 251, 293
CviJI	RGCY	2 cut(s)	211, 236
CviKI_1	RGCY	2 cut(s)	211, 236
CviQI	GTAC	4 cut(s)	16, 24, 289, 355
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco31I	GGTCTC	2 cut(s)	177, 270
EcoNI	CCTNNNNNAGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	45, 152, 254, 296
FatI	CATG	4 cut(s)	41, 148, 250, 292
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	225
Hin1II	CATG	4 cut(s)	45, 152, 254, 296
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	2 cut(s)	53, 295
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	134, 348
HpyAV	CCTTC	2 cut(s)	60, 320
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	191, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	45, 152, 254, 296
KpnI	GGTACC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	119, 189, 201, 212, 222, 245, 268, 333
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	59, 301
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	342
MluCI	AATT	3 cut(s)	157, 254, 333
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	107, 199
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	297, 308
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	4 cut(s)	45, 152, 254, 296
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	59, 301
NspV	TTCGAA	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PflFI	GACNNNGTC	2 cut(s)	72, 299
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	25
PsyI	GACNNNGTC	2 cut(s)	72, 299
RsaI	GTAC	4 cut(s)	17, 25, 290, 356
RsaNI	GTAC	4 cut(s)	16, 24, 289, 355
RseI	CAYNNNNRTG	2 cut(s)	297, 308
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	63
SetI	ASST	4 cut(s)	201, 213, 238, 360
SfuI	TTCGAA	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	297, 308
Sse9I	AATT	3 cut(s)	157, 254, 333
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	157, 254, 333
TatI	WGTACW	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	2 cut(s)	59, 301
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	59, 301
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	47, 209
Tth111I	GACNNNGTC	2 cut(s)	72, 299
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	157, 333
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.