Rmu_co8174702.1_g000001

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8174702.1
Physical Location & Seq
Reverse (-)
5 .. 448
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8174702.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atgtttagactcaattatgttgggactgccccctacattacatgtataccatcactgtatcaccacaaactcagaccaagagacagactcttaatattgtcttctgatggactctatcagtacttcaccaatgaagaagccgtctccgaagtagagttgttcatctcttcctttcctgatggtgaccctgcacaacatctgattgaagaagtgttgtttagagcagcaaagaaagctggactggccttccatgaactgcttgacatcccacaaggcgaacgtcgtcggtaccatgatgacatttccattcttattatttcacttgagggaagaatatggcgttcatcgctttga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.56

Weight (kDa)

5.92

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020367)

Species Orthologous Gene IDs
malus_domestica MD03G1095000.v1.1
prunus_persica Prupe.5G040800_v2.0.a1
rosa_multiflora Rmu_co8174702.1_g000001 Rmu_sc0009521.1_g000002
rosa_samantha Rh6AG120300 Rh6BG113600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 46
AfaI GTAC 2 cut(s) 122, 290
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 75, 148
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 288
AsuHPI GGTGA 3 cut(s) 53, 118, 194
BanI GGYRCC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 236
BccI CCATC 3 cut(s) 58, 101, 173
BceAI ACGGC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 75, 148
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpuEI CTTGAG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 75, 148
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 245
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 288
BsrI ACTGG 1 cut(s) 246
BssNAI GTATAC 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 71
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 75, 148
BstMWI GCNNNNNNNGC 3 cut(s) 233, 242, 346
BstNSI RCATGY 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 53
Csp6I GTAC 2 cut(s) 121, 289
CviAII CATG 3 cut(s) 42, 251, 293
CviJI RGCY 3 cut(s) 140, 236, 245
CviKI_1 RGCY 3 cut(s) 140, 236, 245
CviQI GTAC 2 cut(s) 121, 289
DdeI CTNAG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 3 cut(s) 45, 254, 296
FaiI YATR 6 cut(s) 18, 43, 47, 252, 294, 337
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 41, 250, 292
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 3 cut(s) 45, 254, 296
HinfI GANTC 3 cut(s) 9, 87, 111
HphI GGTGA 3 cut(s) 53, 118, 194
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 74, 106, 148, 201
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 47
Hpy99I CGWCG 2 cut(s) 285, 288
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 242, 346
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 3 cut(s) 45, 254, 296
KpnI GGTACC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 189, 201, 222, 227
Lsp1109I GCAGC 1 cut(s) 236
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 5 cut(s) 93, 146, 159, 218, 342
MluCI AATT 1 cut(s) 13
MlyI GAGTC 3 cut(s) 3, 81, 105
MnlI CCTC 1 cut(s) 319
MseI TTAA 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 233, 242, 346
NlaIII CATG 3 cut(s) 45, 254, 296
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 45
PciI ACATGT 1 cut(s) 41
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 3 cut(s) 3, 81, 105
PpsI GAGTC 3 cut(s) 3, 81, 105
PscI ACATGT 1 cut(s) 41
PspEI GGTNACC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 290
RsaI GTAC 2 cut(s) 122, 290
RsaNI GTAC 2 cut(s) 121, 289
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 3 cut(s) 3, 81, 105
SetI ASST 2 cut(s) 238, 283
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 1 cut(s) 13
SspI AATATT 1 cut(s) 96
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 147, 151, 267, 333
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 46
ZrmI AGTACT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.