Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009521.1

Orthogroup ID

OG0020367

Physical Location & Seq

Genomic Coordinates Reverse (-)

1347 .. 4059

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaagtgataagaatcaagaatgaacacccagatgacaaaaactgtattctcaatgatagagtgaaaggtcgtcttaaggttaccagagcgtttggggcaggctttctgaaacagcccaagttcaatgctccgctattggaaatgtttcggaatgagtacattggtaccgcaccatacatctcatgtttgccttctcttcgccaccacagactctgccctagtgatcagtttttgattctttcatctgacggtctgtatcagtatctaagcaatcaggaagttgtttctcatgtggagaattttatggagaagtttcccgagggagaccctgcacaacacctgatagaggagcttcttttccgtgctgcaaagaaagccggaatggatttccatgaattactggacatccctcaaggagatcgcaggaagtatcacgatgatgttactgttatggtcatatcacttgaaggaagaatttggaagtcatcaggaaagtacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043168 GO:0044464 GO:0048507 GO:0048532 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0080090 GO:0098727 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

7.05

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020367)

Species	Orthologous Gene IDs
malus_domestica	MD03G1095000.v1.1
prunus_persica	Prupe.5G040800_v2.0.a1
rosa_multiflora	Rmu_co8174702.1_g000001 Rmu_sc0009521.1_g000002
rosa_samantha	Rh6AG120300 Rh6BG113600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	2 cut(s)	134, 171
AcsI	RAATTY	2 cut(s)	301, 477
AfaI	GTAC	3 cut(s)	161, 169, 500
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	127, 470
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	301, 477
Asp700I	GAANNNNTTC	1 cut(s)	147
Asp718I	GGTACC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	320
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	226, 421
BspACI	CCGC	2 cut(s)	134, 171
BspLI	GGNNCC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	226, 421
Bst4CI	ACNGT	3 cut(s)	47, 254, 451
Bst6I	CTCTTC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	269
BstEII	GGTNACC	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	2 cut(s)	229, 424
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	226, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 377
BstPI	GGTNACC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	160, 168, 499
CviAII	CATG	3 cut(s)	186, 293, 395
CviJI	RGCY	4 cut(s)	105, 118, 355, 380
CviKI_1	RGCY	4 cut(s)	105, 118, 355, 380
CviQI	GTAC	3 cut(s)	160, 168, 499
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	228, 423
DpnII	GATC	2 cut(s)	226, 421
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	82
FaeI	CATG	3 cut(s)	189, 296, 398
FaiI	YATR	7 cut(s)	178, 187, 294, 308, 396, 455, 461
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	3 cut(s)	185, 292, 394
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	3 cut(s)	189, 296, 398
HinfI	GANTC	3 cut(s)	15, 213, 238
HpaII	CCGG	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	111, 153, 250
Hpy188III	TCNNGA	5 cut(s)	19, 278, 320, 437, 492
HpyAV	CCTTC	2 cut(s)	204, 464
HpyCH4III	ACNGT	3 cut(s)	47, 254, 451
HpyCH4V	TGCA	2 cut(s)	335, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 377
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	189, 296, 398
KpnI	GGTACC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	226, 421
LmnI	GCTCC	2 cut(s)	136, 352
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	82, 445
MalI	GATC	2 cut(s)	228, 423
MboI	GATC	2 cut(s)	226, 421
MboII	GAAGA	2 cut(s)	191, 486
MluCI	AATT	3 cut(s)	301, 398, 477
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	3 cut(s)	316, 343, 423
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	33, 441
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	98, 377
NdeII	GATC	2 cut(s)	226, 421
NlaIII	CATG	3 cut(s)	189, 296, 398
NlaIV	GGNNCC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	15, 238
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	161, 169, 500
RsaNI	GTAC	3 cut(s)	160, 168, 499
RseI	CAYNNNNRTG	2 cut(s)	33, 441
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	226, 421
SchI	GAGTC	1 cut(s)	207
SetI	ASST	5 cut(s)	73, 84, 345, 357, 504
SmiMI	CAYNNNNRTG	2 cut(s)	33, 441
SmlI	CTYRAG	2 cut(s)	77, 414
SmoI	CTYRAG	2 cut(s)	77, 414
Sse9I	AATT	3 cut(s)	301, 398, 477
SsiI	CCGC	2 cut(s)	134, 171
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	47, 254, 451
TasI	AATT	3 cut(s)	301, 398, 477
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	15, 238
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	39, 234, 411
TspGWI	ACGGA	1 cut(s)	353
Vha464I	CTTAAG	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	301, 477
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.