Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020367

Physical Location & Seq

Genomic Coordinates Forward (+)

18039799 .. 18040074

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATTTCCATGAATTACTGGACATCCCTCAAGGAGATCGCAGGAAGTATCACGATGATGTTACTGTTATGGTCATATCACTTGAAGGAAGAATTTGGAAGTCATCAGGAAAGTACCTTTACGACATTATACACAAGCAAGCAATGTTTTCTATACAAGCTATATTGCAATTTCGAATTTCAGCTAGAGATAGTCTGCAAGCAGTATGGAAAGCTTTGCTGCTGACCGTGGTCCATGGGGGTCCATTAGGTTTTGTTTTCTGTCTCACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043168 GO:0044464 GO:0048507 GO:0048532 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0080090 GO:0098727 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

91

Amino Acids

10.42

Weight (kDa)

7.94

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020367)

Species	Orthologous Gene IDs
malus_domestica	MD03G1095000.v1.1
prunus_persica	Prupe.5G040800_v2.0.a1
rosa_multiflora	Rmu_co8174702.1_g000001 Rmu_sc0009521.1_g000002
rosa_samantha	Rh6AG120300 Rh6BG113600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	93, 177
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	3 cut(s)	161, 185, 215
AluI	AGCT	3 cut(s)	161, 185, 215
Alw26I	GTCTC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	93, 177
AspS9I	GGNCC	2 cut(s)	232, 242
AsuII	TTCGAA	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	232, 242
BbvI	GCAGC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme18I	GGWCC	2 cut(s)	232, 242
BmgT120I	GGNCC	2 cut(s)	232, 242
BmiI	GGNNCC	1 cut(s)	243
BoxI	GACNNNNGTC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	228, 235
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	228, 235
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	228, 235
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	67, 229
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	141, 201
BstDSI	CCRYGG	2 cut(s)	228, 235
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	37
BstPAI	GACNNNNGTC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	228, 235
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	141, 201
Cfr13I	GGNCC	2 cut(s)	232, 242
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	11, 236
CviJI	RGCY	3 cut(s)	161, 185, 215
CviKI_1	RGCY	3 cut(s)	161, 185, 215
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	232, 242
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	14, 239
FaiI	YATR	9 cut(s)	12, 71, 77, 131, 155, 164, 208, 237, 274
FatI	CATG	2 cut(s)	10, 235
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	14, 239
HindIII	AAGCTT	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	53, 108
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	67, 229
HpyCH4V	TGCA	2 cut(s)	169, 199
Hsp92II	CATG	2 cut(s)	14, 239
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	5, 28, 93
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	102
MluCI	AATT	4 cut(s)	14, 93, 170, 177
MnlI	CCTC	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	14, 239
NlaIV	GGNNCC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	232, 242
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	57
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	232, 242
SetI	ASST	5 cut(s)	120, 163, 187, 217, 253
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	2 cut(s)	232, 242
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	14, 93, 170, 177
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	67, 229
TaqI	TCGA	1 cut(s)	175
TasI	AATT	4 cut(s)	14, 93, 170, 177
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	232, 242
XapI	RAATTY	2 cut(s)	93, 177
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.