Rh6BG113600

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
17697948 .. 17710562
12615 bp
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UTR
Exon/CDS
Intron
Rh6BG113600.1

Sequence Viewer

Length: 165 bp
ATGGGAGTCTATGGCTGTTTCTTATTCCTCATTTTCCCGTCATCTCGAATGGATTTCCATGAATTACTGGACATCCCTCAAGGAGATCGCAGGAAGTATCACGATGATGTTACTGTTATGGTCATATCACTTGAAGGAAGAATTTGGAAGTCATCAGGAAAGTAA

Protein Analysis

54

Amino Acids

6.29

Weight (kDa)

6.7

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020367)

Species Orthologous Gene IDs
malus_domestica MD03G1095000.v1.1
prunus_persica Prupe.5G040800_v2.0.a1
rosa_multiflora Rmu_co8174702.1_g000001 Rmu_sc0009521.1_g000002
rosa_samantha Rh6AG120300 Rh6BG113600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 141
AgsI TTSAA 1 cut(s) 134
ApoI RAATTY 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 72
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 115
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 72
CviAII CATG 1 cut(s) 59
CviJI RGCY 1 cut(s) 15
CviKI_1 RGCY 1 cut(s) 15
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
FaeI CATG 1 cut(s) 62
FaiI YATR 4 cut(s) 12, 60, 119, 125
FatI CATG 1 cut(s) 58
FokI GGATG 1 cut(s) 59
Hin1II CATG 1 cut(s) 62
HinfI GANTC 1 cut(s) 6
Hpy188III TCNNGA 3 cut(s) 45, 101, 156
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 115
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 53, 76, 141
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 150
MluCI AATT 2 cut(s) 62, 141
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 2 cut(s) 38, 87
MslI CAYNNNNRTG 1 cut(s) 105
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 62
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 105
Sau3AI GATC 1 cut(s) 85
SchI GAGTC 1 cut(s) 15
SgeI CNNG 8 cut(s) 49, 57, 71, 80, 92, 103, 113, 143
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 2 cut(s) 62, 141
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 46
TasI AATT 2 cut(s) 62, 141
TspDTI ATGAA 1 cut(s) 75
XapI RAATTY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.