Prupe.5G047300_v2.0.a1

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018044
Physical Location & Seq
Reverse (-)
5024094 .. 5026144
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G047300.1

Sequence Viewer

Length: 768 bp
ATGGTTTTCTCTCTGTGGTCTCAACTTTCCCTTTTCATTGTCTTGCTTGTAGTACAAACTCCAGGGGAGGCTGCAACATGCAGTGACTGTTTCGTTCATTCTCGGGCAAGTTATTATCCGAATTCTGAAGCGCAAGGAACAGATATAGGTGCTTGTGGGTTTGGTTCATTTGGAGCAACCATCAATGGAGGGGATGTCTCAGCTGCCTCTGACCTCTATCGCAATGGAGTCGGATGCGGTGCTTGTTACCAGGTGAGGTGCACCAACAGCCTCTATTGCTCAGACAAAGGAGCAACTGTGGTTATAACTGACCAAGGCTCCGGTCACAACACGGACTTCATCCTTAGCAAACGAGCCTTTGGCCGGATGGCTCAAACTACAGATGCAGCTGCTTCTCTGCTGTCCCTTGGAGTAGTCGATATCGAATACCGAAGGGTTTCATGCAGCTACCCAGGAAAAAATATTACAATCAAGATTGATGAGAACAGTAATTATCCTCACTATTTGGCTTTTGTAATATATTACCAGCAAGGGAAGAACGATATCACAGCTGTCCAGCTATGTGAGACACAAAATTTTGCCTGCAAACTATTGGACAGGAGTTATGGAGCAGTTTGGACGACTACCTCACCCCCAAGTGGACCCTTGCAGATAAGGATGCTATTCAGTGATGAAGATGGTGATGAGAATTGGGTTGTTCCTGAGAATAACATACCACAAGATTGGAAAGTTGGACAAACATATGACTCAGGAGTTCAAGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.7

Weight (kDa)

4.69

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018044)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21120
malus_domestica MD06G1041000.v1.1
prunus_persica Prupe.5G047300_v2.0.a1 Prupe.5G047300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208241
rosa_laevigata RLG00000003236
rosa_multiflora Rmu_sc0007869.1_g000018
rosa_roxburghii Rroxscaffold_3G00250650
rosa_rugosa Rorug07G0102400
rosa_samantha Rh7CG252500
rosa_wichuraiana Rw7G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AciI CCGC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 2 cut(s) 121, 574
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 363, 638
AgsI TTSAA 1 cut(s) 758
AjnI CCWGG 3 cut(s) 61, 249, 451
AluBI AGCT 5 cut(s) 203, 389, 447, 551, 559
AluI AGCT 5 cut(s) 203, 389, 447, 551, 559
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 24, 202, 560
Alw44I GTGCAC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 259
ApeKI GCWGC 5 cut(s) 71, 203, 386, 389, 444
ApoI RAATTY 2 cut(s) 121, 574
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 3 cut(s) 265, 621, 692
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 5 cut(s) 58, 190, 376, 398, 456
BccI CCATC 3 cut(s) 188, 361, 671
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 3 cut(s) 63, 251, 453
BcoDI GTCTC 3 cut(s) 24, 202, 560
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 5 cut(s) 72, 204, 387, 390, 445
BlsI GCNGC 5 cut(s) 73, 205, 388, 391, 446
Bme1390I CCNGG 3 cut(s) 63, 251, 453
Bme18I GGWCC 1 cut(s) 641
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 2 cut(s) 319, 643
BmrFI CCNGG 3 cut(s) 63, 251, 453
BmsI GCATC 3 cut(s) 224, 373, 648
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 62, 313, 406, 451
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 7 cut(s) 180, 210, 282, 302, 312, 332, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 638
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 63, 251, 453
BseDI CCNNGG 4 cut(s) 62, 313, 406, 451
BseGI GGATG 5 cut(s) 199, 239, 339, 372, 663
BseLI CCNNNNNNNGG 2 cut(s) 363, 638
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 4 cut(s) 213, 294, 693, 762
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 5 cut(s) 58, 190, 376, 398, 456
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 321, 364
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 363, 638
BsmAI GTCTC 3 cut(s) 24, 202, 560
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 263
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 4 cut(s) 212, 293, 694, 761
BspLI GGNNCC 2 cut(s) 319, 643
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 4 cut(s) 62, 313, 406, 451
BssT1I CCWWGG 2 cut(s) 313, 406
Bst2UI CCWGG 3 cut(s) 63, 251, 453
Bst4CI ACNGT 3 cut(s) 89, 298, 488
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 5 cut(s) 199, 280, 344, 702, 748
BstF5I GGATG 5 cut(s) 199, 239, 339, 372, 663
BstHHI GCGC 1 cut(s) 133
BstMAI GTCTC 3 cut(s) 24, 202, 560
BstMWI GCNNNNNNNGC 2 cut(s) 267, 276
BstNI CCWGG 3 cut(s) 63, 251, 453
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 61, 249, 451
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 5 cut(s) 58, 190, 376, 398, 456
BstXI CCANNNNNNTGG 1 cut(s) 723
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 5 cut(s) 199, 239, 339, 372, 663
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 88, 673
Cac8I GCNNGC 1 cut(s) 583
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 641
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 78, 441
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 5 cut(s) 199, 280, 344, 702, 748
EaeI YGGCCR 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 313, 406
Eco31I GGTCTC 1 cut(s) 24
Eco32I GATATC 2 cut(s) 421, 544
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 3 cut(s) 61, 249, 451
EcoRV GATATC 2 cut(s) 421, 544
EcoT14I CCWWGG 2 cut(s) 313, 406
ErhI CCWWGG 2 cut(s) 313, 406
FaeI CATG 2 cut(s) 81, 444
FaqI GGGAC 1 cut(s) 388
FatI CATG 2 cut(s) 77, 440
FauNDI CATATG 1 cut(s) 742
Fnu4HI GCNGC 5 cut(s) 72, 204, 387, 390, 445
FokI GGATG 5 cut(s) 206, 246, 326, 379, 670
Fsp4HI GCNGC 5 cut(s) 72, 204, 387, 390, 445
GlaI GCGC 1 cut(s) 132
GluI GCNGC 5 cut(s) 72, 204, 387, 390, 445
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 321, 364
HhaI GCGC 1 cut(s) 133
Hin1II CATG 2 cut(s) 81, 444
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 2 cut(s) 228, 746
HpaII CCGG 2 cut(s) 321, 364
HphI GGTGA 3 cut(s) 265, 621, 692
Hpy166II GTNNAC 3 cut(s) 261, 641, 763
Hpy188I TCNGA 5 cut(s) 120, 127, 211, 233, 283
Hpy188III TCNNGA 3 cut(s) 472, 701, 750
Hpy8I GTNNAC 3 cut(s) 261, 641, 763
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 3 cut(s) 89, 298, 488
HpyCH4V TGCA 7 cut(s) 74, 81, 261, 386, 444, 585, 649
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 276
HpyF3I CTNAG 5 cut(s) 199, 280, 344, 702, 748
Hsp92II CATG 2 cut(s) 81, 444
HspAI GCGC 1 cut(s) 131
LmnI GCTCC 4 cut(s) 173, 290, 323, 608
Lsp1109I GCAGC 5 cut(s) 58, 190, 376, 398, 456
LweI GCATC 3 cut(s) 224, 373, 648
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 83, 245, 323
MboII GAAGA 2 cut(s) 547, 686
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 4 cut(s) 121, 490, 574, 688
MlyI GAGTC 2 cut(s) 237, 740
MmeI TCCRAC 2 cut(s) 211, 712
MnlI CCTC 8 cut(s) 61, 182, 217, 224, 249, 281, 507, 637
MroXI GAANNNNTTC 1 cut(s) 436
MspA1I CMGCKG 3 cut(s) 203, 389, 551
MspI CCGG 2 cut(s) 321, 364
MspR9I CCNGG 3 cut(s) 63, 251, 453
MvaI CCWGG 3 cut(s) 63, 251, 453
MwoI GCNNNNNNNGC 2 cut(s) 267, 276
NdeI CATATG 1 cut(s) 742
NlaIII CATG 2 cut(s) 81, 444
NlaIV GGNNCC 2 cut(s) 319, 643
NmuCI GTSAC 2 cut(s) 83, 323
NspI RCATGY 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 436
PkrI GCNGC 5 cut(s) 73, 205, 388, 391, 446
PleI GAGTC 2 cut(s) 236, 740
PpsI GAGTC 2 cut(s) 236, 740
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 3 cut(s) 61, 249, 451
PspGI CCWGG 3 cut(s) 61, 249, 451
PspN4I GGNNCC 2 cut(s) 319, 643
PspPI GGNCC 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 87
PvuII CAGCTG 3 cut(s) 203, 389, 551
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 5 cut(s) 72, 204, 387, 390, 445
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 2 cut(s) 237, 740
ScrFI CCNGG 3 cut(s) 63, 251, 453
SduI GDGCHC 1 cut(s) 263
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 3 cut(s) 224, 373, 648
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 641
Sse9I AATT 4 cut(s) 121, 490, 574, 688
SsiI CCGC 1 cut(s) 237
SspI AATATT 1 cut(s) 463
StyD4I CCNGG 3 cut(s) 61, 249, 451
StyI CCWWGG 2 cut(s) 313, 406
TaaI ACNGT 3 cut(s) 89, 298, 488
TaqI TCGA 2 cut(s) 417, 423
TasI AATT 4 cut(s) 121, 490, 574, 688
TatI WGTACW 1 cut(s) 52
TscAI CASTG 2 cut(s) 88, 673
TseFI GTSAC 2 cut(s) 83, 323
TseI GCWGC 5 cut(s) 71, 203, 386, 389, 444
Tsp45I GTSAC 2 cut(s) 83, 323
TspDTI ATGAA 6 cut(s) 25, 86, 156, 328, 429, 687
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 2 cut(s) 88, 673
VneI GTGCAC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 2 cut(s) 121, 574
XceI RCATGY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.