Rroxscaffold_3G00250650

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018044
Physical Location & Seq
Reverse (-)
44441084 .. 44442840
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250650.1

Sequence Viewer

Length: 762 bp
ATGGCTTTCTGTCTGCAATCACCTTTGTGCCTTTTCATTGTTTTTCTTCTCTTACAAACACTGGGCGGCAAGGCTGCAACCTGTAATGACTGCTTTGTTCAATCTCGAGCAGCTTATTATCCGAATTCTGAAACACAAGGAACAGATCGAGGTGAATGCGGGTTCGGTTCGTTTGGAGCAACAATTAATGGTGGGGATGTGTCAGCAGCCTCTGACCTCTATCGCAAGGGGGTTGGATGTGGTGCTTGTTACCAGGTGAGGTGCACAAACGGCGGCTACTGCTCAGACAAAGGAGTAACTATAGTTATAACAGATTCAGGCAGCAGTGATCACACAGACTTTATCCTCAGCCAACGAGCGTTTGCCCGGATGGCTCAAACAACTGATGCGGCTGCTTCTCTATTATCTCTTGGTATAGTTGATATTGAATACAGACGCTACCCCAACAAAAATATCACAATTAAGATCGATGAGAACAGCAACTATCCTTATTATTTGGCTTTTGTACTATGGTACCAACAAGGCAAGAAAGATATCACAGCTGTCCAGCTTTGTGAGACAGAAAACTTTGTCTGTAAGTTACTGGACCGGACTTATGGAGCAGTTTGGACAACTACCTCACCTCCAACTGGACCCCTGCAGATAAGGATGTTATTCAGTGATGATGATGGTGATGAGAATTGGGTTGTTCCAGTAAATAACATACCACAAGACTGGAAAGCTGGACAAACATATGACTCGGGAGTTCAAGTGAACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.71

Weight (kDa)

4.7

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 71 - 144 2.6e-12 Lytic transglycolase
Expansin_C PF01357 152 - 233 3.2e-13 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018044)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21120
malus_domestica MD06G1041000.v1.1
prunus_persica Prupe.5G047300_v2.0.a1 Prupe.5G047300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208241
rosa_laevigata RLG00000003236
rosa_multiflora Rmu_sc0007869.1_g000018
rosa_roxburghii Rroxscaffold_3G00250650
rosa_rugosa Rorug07G0102400
rosa_samantha Rh7CG252500
rosa_wichuraiana Rw7G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 513
AciI CCGC 4 cut(s) 66, 159, 273, 389
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 2 cut(s) 507, 515
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 3 cut(s) 101, 428, 749
AjnI CCWGG 1 cut(s) 252
AleI CACNNNNGTG 1 cut(s) 25
AluBI AGCT 4 cut(s) 113, 542, 550, 722
AluI AGCT 4 cut(s) 113, 542, 550, 722
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 551
Alw44I GTGCAC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 105, 739
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 5 cut(s) 74, 110, 206, 321, 392
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 513
AspS9I GGNCC 2 cut(s) 586, 632
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 5 cut(s) 12, 164, 268, 612, 683
AvaI CYCGRG 2 cut(s) 105, 739
AvaII GGWCC 2 cut(s) 586, 632
BaeGI GKGCMC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 497, 530
BanI GGYRCC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 5 cut(s) 61, 122, 218, 333, 379
BccI CCATC 2 cut(s) 364, 662
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 551
BfmI CTRYAG 2 cut(s) 300, 638
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 8 cut(s) 67, 75, 111, 207, 274, 322, 390, 393
BlsI GCNGC 8 cut(s) 68, 76, 112, 208, 275, 323, 391, 394
Bme1390I CCNGG 2 cut(s) 254, 367
Bme18I GGWCC 2 cut(s) 586, 632
BmeT110I CYCGRG 2 cut(s) 105, 739
BmgT120I GGNCC 2 cut(s) 586, 632
BmiI GGNNCC 2 cut(s) 515, 634
BmrFI CCNGG 2 cut(s) 254, 367
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 588
BsaXI ACNNNNNCTCC 3 cut(s) 607, 637, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 5 cut(s) 66, 588, 634, 692, 719
BseBI CCWGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 468
BseGI GGATG 4 cut(s) 202, 242, 375, 654
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 297, 361
BseNI ACTGG 5 cut(s) 66, 588, 634, 692, 719
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 5 cut(s) 61, 122, 218, 333, 379
BshNI GGYRCC 1 cut(s) 513
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 2 cut(s) 105, 739
BsiSI CCGG 2 cut(s) 367, 589
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 161
BsoBI CYCGRG 2 cut(s) 105, 739
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 145, 328, 465
BspACI CCGC 4 cut(s) 66, 159, 273, 389
BspCNI CTCAG 2 cut(s) 296, 360
BspDI ATCGAT 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 515, 634
BspMAI CTGCAG 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 513
BsrI ACTGG 5 cut(s) 66, 588, 634, 692, 719
BssMI GATC 3 cut(s) 145, 328, 465
Bst2UI CCWGG 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 283, 347
BstF5I GGATG 4 cut(s) 202, 242, 375, 654
BstKTI GATC 3 cut(s) 148, 331, 468
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 3 cut(s) 145, 328, 465
BstMWI GCNNNNNNNGC 3 cut(s) 270, 279, 371
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 252, 365
BstSFI CTRYAG 2 cut(s) 300, 638
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 5 cut(s) 61, 122, 218, 333, 379
BstXI CCANNNNNNTGG 1 cut(s) 714
Bsu15I ATCGAT 1 cut(s) 468
BsuTUI ATCGAT 1 cut(s) 468
BtsCI GGATG 4 cut(s) 202, 242, 375, 654
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 59, 331, 664
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 586, 632
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 2 cut(s) 506, 514
CviQI GTAC 2 cut(s) 506, 514
DdeI CTNAG 2 cut(s) 283, 347
DpnI GATC 3 cut(s) 147, 330, 467
DpnII GATC 3 cut(s) 145, 328, 465
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 2 cut(s) 586, 632
Eco88I CYCGRG 2 cut(s) 105, 739
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 535
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 8 cut(s) 67, 75, 111, 207, 274, 322, 390, 393
FokI GGATG 4 cut(s) 209, 249, 382, 661
Fsp4HI GCNGC 8 cut(s) 67, 75, 111, 207, 274, 322, 390, 393
GluI GCNGC 8 cut(s) 67, 75, 111, 207, 274, 322, 390, 393
HapII CCGG 2 cut(s) 367, 589
HgaI GACGC 1 cut(s) 444
HinfI GANTC 2 cut(s) 314, 737
HpaII CCGG 2 cut(s) 367, 589
HphI GGTGA 5 cut(s) 12, 164, 268, 612, 683
Hpy166II GTNNAC 2 cut(s) 264, 754
Hpy188I TCNGA 4 cut(s) 123, 130, 214, 286
Hpy188III TCNNGA 2 cut(s) 105, 741
Hpy8I GTNNAC 2 cut(s) 264, 754
HpyCH4V TGCA 4 cut(s) 16, 77, 264, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 279, 371
HpyF3I CTNAG 2 cut(s) 283, 347
KpnI GGTACC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 145, 328, 465
LmnI GCTCC 2 cut(s) 176, 599
Lsp1109I GCAGC 5 cut(s) 61, 122, 218, 333, 379
LweI GCATC 1 cut(s) 376
MabI ACCWGGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 248, 295, 579
MalI GATC 3 cut(s) 147, 330, 467
MboI GATC 3 cut(s) 145, 328, 465
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 4 cut(s) 124, 183, 459, 679
MlyI GAGTC 1 cut(s) 731
MmeI TCCRAC 2 cut(s) 214, 650
MnlI CCTC 7 cut(s) 143, 220, 227, 252, 356, 628, 633
MseI TTAA 2 cut(s) 186, 462
MslI CAYNNNNRTG 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 367, 589
MspR9I CCNGG 2 cut(s) 254, 367
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 270, 279, 371
NciI CCSGG 1 cut(s) 367
NdeI CATATG 1 cut(s) 733
NdeII GATC 3 cut(s) 145, 328, 465
NlaIV GGNNCC 2 cut(s) 515, 634
OliI CACNNNNGTG 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 105
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 8 cut(s) 68, 76, 112, 208, 275, 323, 391, 394
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
PshBI ATTAAT 1 cut(s) 186
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 515, 634
PspPI GGNCC 2 cut(s) 586, 632
PstI CTGCAG 1 cut(s) 642
PstNI CAGNNNCTG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 507, 515
RsaNI GTAC 2 cut(s) 506, 514
RseI CAYNNNNRTG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 186, 462
SatI GCNGC 8 cut(s) 67, 75, 111, 207, 274, 322, 390, 393
Sau3AI GATC 3 cut(s) 145, 328, 465
Sau96I GGNCC 2 cut(s) 586, 632
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 2 cut(s) 254, 367
SduI GDGCHC 1 cut(s) 266
SexAI ACCWGGT 1 cut(s) 252
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 2 cut(s) 300, 638
Sfr274I CTCGAG 1 cut(s) 105
SinI GGWCC 2 cut(s) 586, 632
SlaI CTCGAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 124, 183, 459, 679
SsiI CCGC 4 cut(s) 66, 159, 273, 389
StyD4I CCNGG 2 cut(s) 252, 365
TaqI TCGA 3 cut(s) 106, 148, 468
TasI AATT 4 cut(s) 124, 183, 459, 679
TatI WGTACW 1 cut(s) 505
TauI GCSGC 3 cut(s) 69, 276, 392
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 186, 462
Tru9I TTAA 2 cut(s) 186, 462
TscAI CASTG 3 cut(s) 66, 331, 664
TseI GCWGC 5 cut(s) 74, 110, 206, 321, 392
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 3 cut(s) 66, 331, 664
VneI GTGCAC 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 586, 632
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.