Rorug07G0102400

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0018044
Physical Location & Seq
Reverse (-)
8082585 .. 8087505
4921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0102400.1

Sequence Viewer

Length: 1305 bp
ATGGAGGAGAAGGAGAAACGATCAAAGGCTCACTCATGGAACCCTAACCCTAACCCTAAATCCAACGCCACAACAATGAAGAAGAAGCACGACTTCGAGTATTGCACGGTTTGCAAGCTGAATCACGACCAAGGTCCGAGCCACAAGTACATCCCCAGCCACACCAAGTCCCTCTCTACTTTCCTCTCTCGCTTCCAGGCCAAGCTCTCCGACGTCGTTTTCTTCCTCAAAAACCCTACCTTCCTCCGCCTCGAACACGCCGCTCGCAACCGCCTCTGGTGCGTCTTTTGCGATTTCGACATTGACGAGCGAGATAGCTCCTTCGCTTGTGGCAATGCAATTAATCACCTTGCGAGTGCCGAACATCTGAAGAATTTGAAGCACTTTTTGTGGAAATACGGTGGAGGAATGGATTCTGTAGATAAATTCAGGATATCGGAAGCTGACCTTGCTAAGTGGGAGAAGAAGTGCAAGTCATTGAAGAGTGAAGCTATTTCTGGAGGACCAATGCCAGGACCTTCAAATGATATCCATAATAAACTTGAATATGGAATTTTAGATACTTTTGAAAATAATAGTAGTTCAAGTTTTTCAAATGGTGTTATGCCTTTACTATATCATACAAACGAGAATCAGGTATCCCATTCTGGACTTTCTCAAGTTGCAAATGTTGGCTGCTTTGTGCAAGATGTTACTACCTCCTCTTCTATAAATTCCCAAGGTTTAACAGTTAGTAGCCAGGGTTCTCTTATTTCTAATGGTAATAAAGGCTCAGCTGACGGCAATTTCAATAATGAAAGGATGAACAAGGTGTATCAGCACGGAAGAATGACAATAGGACAGAGCAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCCGAAAGAGGCCAGTGGAAATGTGTATACTGGAGCACTTCCTCCTTGGTTTGCAGCAGATGAAGAAAATCAGCTTAGTATTCCAAGACAACCAGTTTCTGGTACCCTTCTTCCTCCGTCAAATAAGTCAGGGAAGTCCAAGAAATTAAACCCAAAACGAGTGGGAGCAGCTTGGGCAGAGAGGAGAAAGAGGGAGCTGGAGATGGAACAAAGGGGTGAGATTGTCAAGAGCGATTATGATGCTAATTGGCTCCCCAATTTTGGTGGAGTTTGGCAATCTGGTACCCGGAAAGAGACTAAAAAAGAATTTGAGTTGGAGAAACTTAATTTAGTTAAGGTTGAAAGTCAATCTGAGATGCCAATCAAGATACAGCCTTACGTCAGCAAAAGGATGCGAACTGGTGCGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

434

Amino Acids

48.45

Weight (kDa)

9.2

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC84 PF14968 34 - 404 2.1e-91 Coiled coil protein 84
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018044)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21120
malus_domestica MD06G1041000.v1.1
prunus_persica Prupe.5G047300_v2.0.a1 Prupe.5G047300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208241
rosa_laevigata RLG00000003236
rosa_multiflora Rmu_sc0007869.1_g000018
rosa_roxburghii Rroxscaffold_3G00250650
rosa_rugosa Rorug07G0102400
rosa_samantha Rh7CG252500
rosa_wichuraiana Rw7G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
Acc65I GGTACC 2 cut(s) 992, 1172
AccB1I GGYRCC 2 cut(s) 992, 1172
AccB7I CCANNNNNTGG 1 cut(s) 989
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 917
AciI CCGC 3 cut(s) 247, 261, 271
AcsI RAATTY 6 cut(s) 373, 425, 552, 712, 876, 1196
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 149, 994, 1174
AfiI CCNNNNNNNGG 4 cut(s) 512, 887, 989, 1151
AgsI TTSAA 9 cut(s) 379, 481, 522, 545, 569, 585, 594, 790, 1232
AjnI CCWGG 3 cut(s) 195, 511, 738
AluBI AGCT 9 cut(s) 118, 205, 318, 443, 491, 776, 964, 1061, 1087
AluI AGCT 9 cut(s) 118, 205, 318, 443, 491, 776, 964, 1061, 1087
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 1 cut(s) 1178
AlwNI CAGNNNCTG 1 cut(s) 989
AoxI GGCC 2 cut(s) 198, 900
ApeKI GCWGC 3 cut(s) 675, 944, 1058
ApoI RAATTY 6 cut(s) 373, 425, 552, 712, 876, 1196
AseI ATTAAT 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 992, 1172
AspS9I GGNCC 4 cut(s) 134, 503, 515, 890
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 2 cut(s) 338, 1118
AvaII GGWCC 4 cut(s) 134, 503, 515, 890
BanI GGYRCC 2 cut(s) 992, 1172
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 3 cut(s) 662, 956, 1070
BccI CCATC 1 cut(s) 1087
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 1112, 1146
BciT130I CCWGG 3 cut(s) 197, 513, 740
BciVI GTATCC 1 cut(s) 649
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 1178
BfmI CTRYAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 4 cut(s) 261, 676, 945, 1059
BlpI GCTNAGC 1 cut(s) 772
BlsI GCNGC 4 cut(s) 262, 677, 946, 1060
Bme1390I CCNGG 4 cut(s) 197, 513, 740, 1177
Bme18I GGWCC 4 cut(s) 134, 503, 515, 890
BmgT120I GGNCC 4 cut(s) 134, 503, 515, 890
BmiI GGNNCC 5 cut(s) 41, 891, 994, 1142, 1174
BmrFI CCNGG 4 cut(s) 197, 513, 740, 1177
BmsI GCATC 3 cut(s) 1120, 1236, 1272
BoxI GACNNNNGTC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 835, 867
BpmI CTGGAG 3 cut(s) 519, 942, 1109
Bpu1102I GCTNAGC 1 cut(s) 772
BpuEI CTTGAG 2 cut(s) 642, 837
BpuMI CCSGG 1 cut(s) 1177
BsaBI GATNNNNATC 1 cut(s) 1250
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 5 cut(s) 130, 718, 739, 885, 935
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 512, 887, 989, 1151
Bse1I ACTGG 4 cut(s) 903, 925, 983, 1294
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 1250
BseBI CCWGG 3 cut(s) 197, 513, 740
BseDI CCNNGG 5 cut(s) 130, 718, 739, 885, 935
BseGI GGATG 3 cut(s) 150, 807, 1287
BseJI GATNNNNATC 1 cut(s) 1250
BseLI CCNNNNNNNGG 4 cut(s) 512, 887, 989, 1151
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 786, 1233
BseNI ACTGG 4 cut(s) 903, 925, 983, 1294
BseRI GAGGAG 3 cut(s) 20, 691, 1087
BseXI GCAGC 3 cut(s) 662, 956, 1070
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 2 cut(s) 200, 902
BshNI GGYRCC 2 cut(s) 992, 1172
BsiHKAI GWGCWC 1 cut(s) 928
BsiSI CCGG 1 cut(s) 1177
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 4 cut(s) 512, 887, 989, 1151
BsmAI GTCTC 1 cut(s) 1178
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 200, 902
Bsp1286I GDGCHC 1 cut(s) 928
Bsp143I GATC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 772
BspACI CCGC 3 cut(s) 247, 261, 271
BspANI GGCC 2 cut(s) 200, 902
BspCNI CTCAG 2 cut(s) 785, 1234
BspLI GGNNCC 5 cut(s) 41, 891, 994, 1142, 1174
BspT107I GGYRCC 2 cut(s) 992, 1172
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 4 cut(s) 903, 925, 983, 1294
BssECI CCNNGG 5 cut(s) 130, 718, 739, 885, 935
BssMI GATC 1 cut(s) 20
BssNAI GTATAC 1 cut(s) 918
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 4 cut(s) 130, 718, 885, 935
Bst1107I GTATAC 1 cut(s) 918
Bst2UI CCWGG 3 cut(s) 197, 513, 740
Bst4CI ACNGT 3 cut(s) 109, 401, 730
Bst6I CTCTTC 2 cut(s) 476, 709
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 116, 265
BstDEI CTNAG 4 cut(s) 453, 772, 965, 1242
BstF5I GGATG 3 cut(s) 150, 807, 1287
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 1178
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 5 cut(s) 111, 279, 288, 449, 1064
BstNI CCWGG 3 cut(s) 197, 513, 740
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 4 cut(s) 195, 511, 738, 1175
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 662, 956, 1070
BstZ17I GTATAC 1 cut(s) 918
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 2 cut(s) 200, 902
BtsCI GGATG 3 cut(s) 150, 807, 1287
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 2 cut(s) 116, 265
CaiI CAGNNNCTG 1 cut(s) 989
Cfr13I GGNCC 4 cut(s) 134, 503, 515, 890
CseI GACGC 1 cut(s) 271
Csp6I GTAC 3 cut(s) 148, 993, 1173
CspCI CAANNNNNGTGG 4 cut(s) 1032, 1067, 1135, 1170
CviAII CATG 1 cut(s) 36
CviQI GTAC 3 cut(s) 148, 993, 1173
DdeI CTNAG 4 cut(s) 453, 772, 965, 1242
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 476, 709
EarI CTCTTC 2 cut(s) 476, 709
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 4 cut(s) 130, 718, 885, 935
Eco32I GATATC 2 cut(s) 435, 529
Eco47I GGWCC 4 cut(s) 134, 503, 515, 890
Eco57I CTGAAG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 195, 511, 738
EcoRV GATATC 2 cut(s) 435, 529
EcoT14I CCWWGG 4 cut(s) 130, 718, 885, 935
ErhI CCWWGG 4 cut(s) 130, 718, 885, 935
FaeI CATG 1 cut(s) 39
FaiI YATR 9 cut(s) 37, 534, 549, 605, 616, 621, 710, 918, 1128
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 432, 464
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 35
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 4 cut(s) 261, 676, 945, 1059
FokI GGATG 3 cut(s) 137, 814, 1294
Fsp4HI GCNGC 4 cut(s) 261, 676, 945, 1059
GluI GCNGC 4 cut(s) 261, 676, 945, 1059
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 3 cut(s) 519, 942, 1109
HaeIII GGCC 2 cut(s) 200, 902
HapII CCGG 1 cut(s) 1177
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 39
HinfI GANTC 4 cut(s) 121, 413, 631, 865
HpaII CCGG 1 cut(s) 1177
HphI GGTGA 2 cut(s) 338, 1118
Hpy166II GTNNAC 1 cut(s) 918
Hpy188I TCNGA 7 cut(s) 138, 211, 369, 439, 864, 894, 1243
Hpy188III TCNNGA 6 cut(s) 125, 430, 498, 648, 1117, 1255
Hpy8I GTNNAC 1 cut(s) 918
Hpy99I CGWCG 2 cut(s) 215, 218
HpyAV CCTTC 6 cut(s) 4, 250, 331, 528, 891, 1007
HpyCH4III ACNGT 3 cut(s) 109, 401, 730
HpyCH4IV ACGT 2 cut(s) 213, 1269
HpyCH4V TGCA 7 cut(s) 105, 114, 338, 471, 665, 685, 944
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 279, 288, 449, 1064
HpyF3I CTNAG 4 cut(s) 453, 772, 965, 1242
HpySE526I ACGT 2 cut(s) 213, 1269
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 39
KpnI GGTACC 2 cut(s) 996, 1176
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 5 cut(s) 323, 923, 1055, 1084, 1146
Lsp1109I GCAGC 3 cut(s) 662, 956, 1070
LweI GCATC 3 cut(s) 1120, 1236, 1272
MaeII ACGT 2 cut(s) 213, 1269
MaeIII GTNAC 1 cut(s) 691
MalI GATC 1 cut(s) 22
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 928
MmeI TCCRAC 3 cut(s) 87, 234, 1185
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 5 cut(s) 342, 725, 1037, 1215, 1224
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 1 cut(s) 1177
MspR9I CCNGG 4 cut(s) 197, 513, 740, 1177
MvaI CCWGG 3 cut(s) 197, 513, 740
MwoI GCNNNNNNNGC 5 cut(s) 111, 279, 288, 449, 1064
NciI CCSGG 1 cut(s) 1177
NdeII GATC 1 cut(s) 20
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 5 cut(s) 41, 891, 994, 1142, 1174
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 4 cut(s) 121, 413, 631, 865
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 4 cut(s) 262, 677, 946, 1060
PpuMI RGGWCCY 1 cut(s) 515
PshAI GACNNNNGTC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 3 cut(s) 195, 511, 738
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 3 cut(s) 195, 511, 738
PspN4I GGNNCC 5 cut(s) 41, 891, 994, 1142, 1174
PspPI GGNCC 4 cut(s) 134, 503, 515, 890
PspPPI RGGWCCY 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PstNI CAGNNNCTG 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 149, 994, 1174
RsaNI GTAC 3 cut(s) 148, 993, 1173
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 5 cut(s) 342, 725, 1037, 1215, 1224
SatI GCNGC 4 cut(s) 261, 676, 945, 1059
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 4 cut(s) 134, 503, 515, 890
ScrFI CCNGG 4 cut(s) 197, 513, 740, 1177
SduI GDGCHC 1 cut(s) 928
SfaNI GCATC 3 cut(s) 1120, 1236, 1272
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 4 cut(s) 134, 503, 515, 890
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 657, 852
SmoI CTYRAG 2 cut(s) 657, 852
SsiI CCGC 3 cut(s) 247, 261, 271
StyD4I CCNGG 4 cut(s) 195, 511, 738, 1175
StyI CCWWGG 4 cut(s) 130, 718, 885, 935
TaaI ACNGT 3 cut(s) 109, 401, 730
TaiI ACGT 2 cut(s) 216, 1272
TaqI TCGA 3 cut(s) 96, 252, 297
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 4 cut(s) 121, 413, 631, 865
Tru1I TTAA 5 cut(s) 342, 725, 1037, 1215, 1224
Tru9I TTAA 5 cut(s) 342, 725, 1037, 1215, 1224
TscAI CASTG 1 cut(s) 910
TseI GCWGC 3 cut(s) 675, 944, 1058
TspDTI ATGAA 4 cut(s) 92, 810, 818, 966
TspGWI ACGGA 2 cut(s) 837, 996
TspRI CASTG 1 cut(s) 910
Van91I CCANNNNNTGG 1 cut(s) 989
VpaK11BI GGWCC 4 cut(s) 134, 503, 515, 890
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 6 cut(s) 373, 425, 552, 712, 876, 1196
XmiI GTMKAC 1 cut(s) 917
XmnI GAANNNNTTC 1 cut(s) 412
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.