Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0020196

Physical Location & Seq

Genomic Coordinates Forward (+)

9430429 .. 9432614

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G080600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGAATCCAAATGGTCCAAATCTTGTATTTTTACTGAATAAAAGTATAACCTTGAACCAACTAAAACAAATCCATGCACCCATTATAACCAATGGCCTTAACGAGCTTCAGAGCCTCTTGCTCCGCCAAGTCCTCCACTCAAATTTCACTTACTCTAGAACTATAGCTCAGTATGTGCACCAAATCCTTCACAATTTGCAAAACCCAGATGACTTTTCATGGGGTTGTGCCATTCGTTTCTTCTCTCTGCATTTCCAGTACAAAACGGCTTTGTCTCTTTACGTTCAAATCAAAAGGCTAGGACTGTGCCCAACTAGTTTTGCTGTGTCCTCAGCTCTAAGGGCATGTGCTAGGATTGTACATAAGGTGGGTGGGATTTCAATCCATGCCCAGGTTCATAAGTATGGGTTTTGCGGCTGTGTTTATGTACAAACTGCCCTTGTGGACTTGTATTCTAAACTGGGTGACATGGAAACTGCACGGAAGGTGTTTGATGGAATGACAGAGAAGAATGTGGTTTCTTGGAATTCTATCTTATCTGGGTATTTGAAAGCTGGGAATATGGAAGAGGCTCAGGTGGTGTTTGATGAGATTCCGAATAAGGATGTTGTGTCTTGGAATTCAATGGTTTCGGGGTATGCAAGAATAGGAAATATGGACAAGGCGTTTTTCTTGTTTCAACAAATGCCAGAGAGGAGTTCAGCTTCTTGGAATGCAATGATTAGTGGTTTTGCGGATTGTGGAAGAATGGAATCGGCACGAAGCATTTTTGATTCCATGCCATTAAGAAATAAAGTTTCTTGGATTGCCATGATTAGCGGGTACTCAAAATGCGGCAATGTTGAGTCTGCTCGTCAAGTCTTTGATCAGATGAGTGAGAAAGATGTGCTTTCGTTTAATGCCATGATAGCTTGCTATGCGCAAAATAGTCAACCAAAGGATGCCCTTGAGCTGTTCAACCAGATACTTAAACGGGAGGTGAATATTCAACCGAATGAGATGACTTTGGCGAGTGTTATATCTGCTAGTTCACAACTGGGAGATTTGAAATTTGGGTTATGGATTGAGACATATATGAGTAAGGATGGAATTGAATTAGATGATCATTTGGCTACTGCTTTACTGGACTTGTACACAAAATGTGGAGACATTGAAAGGGCATATAAGTTGTTTCATGGCTTGAAAAAGAGAGATGTAGTTGCTTATTCGGCGATGATCTTGGGTTGCGGCATAAATGGTAAGGCAGTTGATGCAACCAAGATGTTTGAGGAGATGGTAAGCGCCCAAATTTGCCCAAATTCAGTCACATACACTGGGCTACTAACTGCCTATAACCATGCTGGTTTGGTTGAAGAAGGCTACCGATGCTTTAATTCAATGAATGACCATGGAGTTGTGCCTTCAGGCGATCATTATGGGATCATGGTCGACCTTTTAGGCAGGGCAGGACAGTTCGACAAAGCACTTGAGCTAATAAGGAGCATGCCGATGCAACCTCAAGCTGGGGTGTGGGGAGCTTTGCTTCTTGCTTGCTCATTACACAACAATGTTGAGCTTGGAGAGATTGCCGCTCGGAATTGCTTTAAATTGGAGCCTGATAAAAGCGGTTATTATGCTCTTCTTGCTAACATTTATGCTTCTACTGAGAGATGGGACGATGCGAGGAGATTGAGAAAGGTTATGGAGAAGAAAGGATTCACCAAGATTCCTGGGTGTAGCTGGATGCAATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

579

Amino Acids

64.53

Weight (kDa)

7.84

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22760
malus_domestica	MD04G1078100.v1.1
prunus_persica	Prupe.5G080600_v2.0.a1
pyrus_communis	pycom04g07010 pycom06g06320 pycom06g06340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
Acc16I	TGCGCA	1 cut(s)	921
AccBSI	CCGCTC	1 cut(s)	1571
AccI	GTMKAC	1 cut(s)	1428
AciI	CCGC	8 cut(s)	124, 414, 734, 819, 834, 1227, 1569, 1605
AclWI	GGATC	1 cut(s)	1427
AcsI	RAATTY	6 cut(s)	142, 526, 619, 1049, 1287, 1297
AcuI	CTGAAG	2 cut(s)	92, 1386
AfaI	GTAC	5 cut(s)	260, 360, 429, 824, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	391, 1502
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	390, 1708
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	279, 1061, 1140
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	1427
AoxI	GGCC	1 cut(s)	94
ApaLI	GTGCAC	1 cut(s)	176
ApoI	RAATTY	6 cut(s)	142, 526, 619, 1049, 1287, 1297
Asp700I	GAANNNNTTC	1 cut(s)	1694
AspLEI	GCGC	2 cut(s)	922, 1283
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	476, 991, 1690
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	2 cut(s)	180, 311
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	488, 1079, 1267, 1644
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	2 cut(s)	392, 1710
BclI	TGATCA	2 cut(s)	865, 1102
BcoDI	GTCTC	3 cut(s)	279, 1061, 1140
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	5 cut(s)	156, 299, 315, 351, 1026
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	1284
BisI	GCNGC	4 cut(s)	415, 835, 1228, 1569
BlsI	GCNGC	4 cut(s)	416, 836, 1229, 1570
Bme1390I	CCNGG	2 cut(s)	392, 1710
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	1593
BmrFI	CCNGG	2 cut(s)	392, 1710
BmrI	ACTGGG	3 cut(s)	470, 1046, 1323
BmsI	GCATC	6 cut(s)	931, 1240, 1355, 1479, 1648, 1713
BmuI	ACTGGG	3 cut(s)	470, 1046, 1323
Bpu10I	CCTNAGC	2 cut(s)	331, 573
BpuEI	CTTGAG	3 cut(s)	968, 1482, 1487
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	390, 1387, 1709
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 1502
Bse1I	ACTGG	5 cut(s)	256, 465, 1041, 1128, 1318
Bse3DI	GCAATG	2 cut(s)	723, 844
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	392, 1710
BseDI	CCNNGG	3 cut(s)	390, 1387, 1709
BseGI	GGATG	4 cut(s)	610, 946, 1090, 1728
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	391, 1502
BseMI	GCAATG	2 cut(s)	723, 844
BseMII	CTCAG	4 cut(s)	182, 345, 587, 1635
BseNI	ACTGG	5 cut(s)	256, 465, 1041, 1128, 1318
BseRI	GAGGAG	3 cut(s)	709, 1283, 1678
BseSI	GKGCMC	2 cut(s)	180, 311
BseYI	CCCAGC	2 cut(s)	554, 1502
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	1667
BslI	CCNNNNNNNGG	2 cut(s)	391, 1502
BsmAI	GTCTC	3 cut(s)	279, 1061, 1140
BsmFI	GGGAC	1 cut(s)	1667
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	180, 311
Bsp1407I	TGTACA	3 cut(s)	358, 427, 1131
Bsp143I	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
Bsp19I	CCATGG	1 cut(s)	1387
BspACI	CCGC	8 cut(s)	124, 414, 734, 819, 834, 1227, 1569, 1605
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	4 cut(s)	181, 344, 586, 1636
BspLI	GGNNCC	1 cut(s)	1593
BspPI	GGATC	1 cut(s)	1427
BspQI	GCTCTTC	1 cut(s)	1623
BsrBI	CCGCTC	1 cut(s)	1571
BsrDI	GCAATG	2 cut(s)	723, 844
BsrGI	TGTACA	3 cut(s)	358, 427, 1131
BsrI	ACTGG	5 cut(s)	256, 465, 1041, 1128, 1318
BssECI	CCNNGG	3 cut(s)	390, 1387, 1709
BssMI	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
BssT1I	CCWWGG	1 cut(s)	1387
Bst2UI	CCWGG	2 cut(s)	392, 1710
Bst4CI	ACNGT	2 cut(s)	306, 1452
Bst6I	CTCTTC	2 cut(s)	561, 1623
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstAUI	TGTACA	3 cut(s)	358, 427, 1131
BstC8I	GCNNGC	3 cut(s)	913, 1484, 1531
BstDEI	CTNAG	5 cut(s)	168, 331, 338, 573, 1644
BstDSI	CCRYGG	1 cut(s)	1387
BstF5I	GGATG	4 cut(s)	610, 946, 1090, 1728
BstH2I	RGCGCY	1 cut(s)	1284
BstHHI	GCGC	2 cut(s)	922, 1283
BstKTI	GATC	5 cut(s)	868, 1105, 1218, 1411, 1422
BstMAI	GTCTC	3 cut(s)	279, 1061, 1140
BstMBI	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
BstMWI	GCNNNNNNNGC	7 cut(s)	341, 908, 917, 1208, 1250, 1365, 1622
BstNI	CCWGG	2 cut(s)	392, 1710
BstNSI	RCATGY	2 cut(s)	348, 1486
BstSCI	CCNGG	2 cut(s)	390, 1708
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	2 cut(s)	180, 311
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	1387
BtgZI	GCGATG	1 cut(s)	1226
BtsCI	GGATG	4 cut(s)	610, 946, 1090, 1728
BtsIMutI	CAGTG	1 cut(s)	1311
Cac8I	GCNNGC	3 cut(s)	913, 1484, 1531
CfoI	GCGC	2 cut(s)	922, 1283
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	5 cut(s)	259, 359, 428, 823, 1132
CviQI	GTAC	5 cut(s)	259, 359, 428, 823, 1132
DdeI	CTNAG	5 cut(s)	168, 331, 338, 573, 1644
DpnI	GATC	5 cut(s)	867, 1104, 1217, 1410, 1421
DpnII	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
DraI	TTTAAA	1 cut(s)	1585
Eam1104I	CTCTTC	2 cut(s)	561, 1623
EarI	CTCTTC	2 cut(s)	561, 1623
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	1387
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	92, 1386
EcoRI	GAATTC	2 cut(s)	526, 619
EcoRII	CCWGG	2 cut(s)	390, 1708
EcoT14I	CCWWGG	1 cut(s)	1387
ErhI	CCWWGG	1 cut(s)	1387
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	1 cut(s)	1667
FauI	CCCGC	1 cut(s)	812
FbaI	TGATCA	2 cut(s)	865, 1102
FblI	GTMKAC	1 cut(s)	1428
Fnu4HI	GCNGC	4 cut(s)	415, 835, 1228, 1569
FokI	GGATG	3 cut(s)	617, 953, 1097
Fsp4HI	GCNGC	4 cut(s)	415, 835, 1228, 1569
FspBI	CTAG	5 cut(s)	156, 299, 315, 351, 1026
FspI	TGCGCA	1 cut(s)	921
GlaI	GCGC	2 cut(s)	921, 1282
GluI	GCNGC	4 cut(s)	415, 835, 1228, 1569
GsaI	CCCAGC	2 cut(s)	558, 1506
HaeII	RGCGCY	1 cut(s)	1284
HaeIII	GGCC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	922, 1283
Hin6I	GCGC	2 cut(s)	920, 1281
HinP1I	GCGC	2 cut(s)	920, 1281
HincII	GTYRAC	2 cut(s)	932, 1429
HindII	GTYRAC	2 cut(s)	932, 1429
HinfI	GANTC	7 cut(s)	4, 592, 752, 773, 845, 1695, 1705
HphI	GGTGA	3 cut(s)	476, 991, 1690
Hpy166II	GTNNAC	6 cut(s)	178, 445, 932, 1031, 1134, 1429
Hpy188I	TCNGA	4 cut(s)	111, 597, 870, 1575
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	6 cut(s)	178, 445, 932, 1031, 1134, 1429
HpyAV	CCTTC	4 cut(s)	197, 478, 1349, 1410
HpyCH4III	ACNGT	2 cut(s)	306, 1452
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	7 cut(s)	341, 908, 917, 1208, 1250, 1365, 1622
HpyF3I	CTNAG	5 cut(s)	168, 331, 338, 573, 1644
HpySE526I	ACGT	1 cut(s)	282
HspAI	GCGC	2 cut(s)	920, 1281
Ksp22I	TGATCA	2 cut(s)	865, 1102
Kzo9I	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
LguI	GCTCTTC	1 cut(s)	1623
LmnI	GCTCC	4 cut(s)	126, 1479, 1514, 1591
LweI	GCATC	6 cut(s)	931, 1240, 1355, 1479, 1648, 1713
MaeI	CTAG	5 cut(s)	156, 299, 315, 351, 1026
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	464, 1303
MalI	GATC	5 cut(s)	867, 1104, 1217, 1410, 1421
MbiI	CCGCTC	1 cut(s)	1571
MboI	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
MboII	GAAGA	7 cut(s)	232, 520, 578, 756, 1364, 1610, 1699
MhlI	GDGCHC	2 cut(s)	180, 311
MlyI	GAGTC	1 cut(s)	854
MnlI	CCTC	9 cut(s)	125, 143, 340, 562, 687, 970, 1261, 1506, 1656
MroXI	GAANNNNTTC	1 cut(s)	1694
MseI	TTAA	6 cut(s)	99, 785, 897, 969, 1371, 1584
MslI	CAYNNNNRTG	3 cut(s)	402, 1487, 1545
MspR9I	CCNGG	2 cut(s)	392, 1710
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	392, 1710
MwoI	GCNNNNNNNGC	7 cut(s)	341, 908, 917, 1208, 1250, 1365, 1622
NcoI	CCATGG	1 cut(s)	1387
NdeII	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
NlaIV	GGNNCC	1 cut(s)	1593
NmuCI	GTSAC	2 cut(s)	464, 1303
NsbI	TGCGCA	1 cut(s)	921
NspI	RCATGY	2 cut(s)	348, 1486
PaeI	GCATGC	1 cut(s)	1486
PciSI	GCTCTTC	1 cut(s)	1623
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	1694
PfeI	GAWTC	6 cut(s)	4, 592, 752, 773, 1695, 1705
PkrI	GCNGC	4 cut(s)	416, 836, 1229, 1570
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PsiI	TTATAA	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	390, 1708
PspFI	CCCAGC	2 cut(s)	554, 1502
PspGI	CCWGG	2 cut(s)	390, 1708
PspN4I	GGNNCC	1 cut(s)	1593
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	5 cut(s)	260, 360, 429, 824, 1133
RsaNI	GTAC	5 cut(s)	259, 359, 428, 823, 1132
RseI	CAYNNNNRTG	3 cut(s)	402, 1487, 1545
SalI	GTCGAC	1 cut(s)	1427
SapI	GCTCTTC	1 cut(s)	1623
SaqAI	TTAA	6 cut(s)	99, 785, 897, 969, 1371, 1584
SatI	GCNGC	4 cut(s)	415, 835, 1228, 1569
Sau3AI	GATC	5 cut(s)	865, 1102, 1215, 1408, 1419
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	392, 1710
SduI	GDGCHC	2 cut(s)	180, 311
SfaNI	GCATC	6 cut(s)	931, 1240, 1355, 1479, 1648, 1713
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	3 cut(s)	402, 1487, 1545
SmlI	CTYRAG	3 cut(s)	947, 1466, 1497
SmoI	CTYRAG	3 cut(s)	947, 1466, 1497
SpeI	ACTAGT	1 cut(s)	314
SphI	GCATGC	1 cut(s)	1486
SsiI	CCGC	8 cut(s)	124, 414, 734, 819, 834, 1227, 1569, 1605
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	5 cut(s)	156, 299, 315, 351, 1026
StyD4I	CCNGG	2 cut(s)	390, 1708
StyI	CCWWGG	1 cut(s)	1387
TaaI	ACNGT	2 cut(s)	306, 1452
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	1428, 1455
TatI	WGTACW	4 cut(s)	258, 358, 427, 1131
TauI	GCSGC	4 cut(s)	417, 837, 1230, 1571
TfiI	GAWTC	6 cut(s)	4, 592, 752, 773, 1695, 1705
Tru1I	TTAA	6 cut(s)	99, 785, 897, 969, 1371, 1584
Tru9I	TTAA	6 cut(s)	99, 785, 897, 969, 1371, 1584
TscAI	CASTG	1 cut(s)	1318
TseFI	GTSAC	2 cut(s)	464, 1303
Tsp45I	GTSAC	2 cut(s)	464, 1303
TspDTI	ATGAA	5 cut(s)	17, 207, 386, 1163, 1394
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	1318
VneI	GTGCAC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	6 cut(s)	142, 526, 619, 1049, 1287, 1297
XbaI	TCTAGA	1 cut(s)	155
XceI	RCATGY	2 cut(s)	348, 1486
XmiI	GTMKAC	1 cut(s)	1428
XmnI	GAANNNNTTC	1 cut(s)	1694
XspI	CTAG	5 cut(s)	156, 299, 315, 351, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.