Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0020196

Physical Location & Seq

Genomic Coordinates Reverse (-)

7309832 .. 7310982

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAGATTCCAAATAAGGATGTTGTGTCTTGGAATTCCATGGTTTCGGGGTATGCGAGGATGGGAAATATGGACAAGGCATATTTCTTGTTTCAACAAATTCCACAGAGGAGTTTGGCTTCTTGGAATAGGCATTTTTGATGCCATGCCGTTAAGAAATAATGTTTCTTGGATCACGATGATTAGCGGGTACTCAAAATGCGGCAATGTTGAGTCCGCTCGTCAACTCTTTGATCAGATGAGTGAAAGAGATGTGCTCTTGTTCAATGCCATGATAGCTTGCTATGCACAAAATAGCCAACCAAAGGAGGCCATTGAACTGTTCAACCAGATGCTTAAACTGGAAGTGAATATTCAACCAAATGAGACGACTTTGGCTAGTGTTATATCTGCTAGTTCTCAACTGGGAGATATGAAATTTGGGTTGTGGGCTGAGTTCTATATGAGTGAGCACGGAATTGAATTAGATGATCATTTGGCTACTGCTTTAGTTGATTTGTACACAAAATGCGGAGACATTGATAGGGCATATAAGTTGTTTCATGGCTTGAAAAAGAGAGATGTAGTTGCATATTCTGCAATGATCTTGGGATGCGGCATAAATGGTAAGGCAGTTGAAGCAACCAAGTTGTTTGAAGATATGGTAAATGCCGACATTTGCCCCAATGTGGTAACATACACTGGACTGCTAACTGCCTATAACCACGCCGGTCTAGTTGAAGAAGGCTACCGATGCTTTAATTCCATGAAAGAACATGGACTTGAGCCATCGGGCGATCATTATGGAATCATGGTCGACCTTTTAGGCAGAGCAGGACAGTTGGACAAAGCAGTTGAGCTAATAAGAAGCATGCCAATGCAGCCTCAAGCCGGGGTTTGGGGAGCTTTGCTTCTTGCTTGCTCATTACACAACAATGTTGAGCTTGGGGAGACTGCTGCTCGGAATTGCTTTAAGTTGGAGCCTGATAAAAACGGTTATTACGTTCTTCTTGCCAACATTTATGCTTCTGCTGCGAGATGGGACGATGAGAGGAGATTGAGAAAGGTCATGGAGAAGAAGGGGTTCGCCAAGATTCCAGGCTGTAGCTGGATGGATTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

368

Amino Acids

41.4

Weight (kDa)

6.32

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22760
malus_domestica	MD04G1078100.v1.1
prunus_persica	Prupe.5G080600_v2.0.a1
pyrus_communis	pycom04g07010 pycom06g06320 pycom06g06340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	795
AciI	CCGC	5 cut(s)	186, 201, 216, 510, 594
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	3 cut(s)	33, 98, 416
AfaI	GTAC	2 cut(s)	191, 500
AfiI	CCNNNNNNNGG	4 cut(s)	304, 667, 869, 876
AjnI	CCWGG	1 cut(s)	1075
AluBI	AGCT	5 cut(s)	278, 838, 884, 922, 1086
AluI	AGCT	5 cut(s)	278, 838, 884, 922, 1086
Alw21I	GWGCWC	2 cut(s)	258, 453
Alw26I	GTCTC	3 cut(s)	359, 507, 923
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	859, 935, 1010
ApoI	RAATTY	3 cut(s)	33, 98, 416
Asp700I	GAANNNNTTC	1 cut(s)	1061
AsuC2I	CCSGG	1 cut(s)	871
Bbv12I	GWGCWC	2 cut(s)	258, 453
BbvI	GCAGC	3 cut(s)	871, 922, 997
BccI	CCATC	4 cut(s)	54, 775, 1011, 1084
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	1077
BclI	TGATCA	2 cut(s)	232, 469
BcnI	CCSGG	1 cut(s)	871
BcoDI	GTCTC	3 cut(s)	359, 507, 923
BfaI	CTAG	3 cut(s)	378, 393, 713
BfmI	CTRYAG	1 cut(s)	1081
BisI	GCNGC	5 cut(s)	202, 595, 860, 936, 1011
BlsI	GCNGC	5 cut(s)	203, 596, 861, 937, 1012
Bme1390I	CCNGG	2 cut(s)	871, 1077
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	2 cut(s)	871, 1077
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	4 cut(s)	130, 321, 581, 722
BmuI	ACTGGG	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpuEI	CTTGAG	2 cut(s)	782, 849
BpuMI	CCSGG	1 cut(s)	871
BsaJI	CCNNGG	2 cut(s)	38, 870
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 667, 869, 876
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	345, 408, 685
Bse3DI	GCAATG	2 cut(s)	211, 585
BseBI	CCWGG	1 cut(s)	1077
BseDI	CCNNGG	2 cut(s)	38, 870
BseGI	GGATG	4 cut(s)	24, 65, 596, 1095
BseLI	CCNNNNNNNGG	4 cut(s)	304, 667, 869, 876
BseMI	GCAATG	2 cut(s)	211, 585
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	3 cut(s)	345, 408, 685
BseRI	GAGGAG	2 cut(s)	123, 1045
BseXI	GCAGC	3 cut(s)	871, 922, 997
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	258, 453
BsiSI	CCGG	2 cut(s)	708, 870
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	4 cut(s)	304, 667, 869, 876
BsmAI	GTCTC	3 cut(s)	359, 507, 923
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	1034
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	258, 453
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	171, 232, 469, 582, 775
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	5 cut(s)	186, 201, 216, 510, 594
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	960
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	211, 585
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	345, 408, 685
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	38, 870
BssMI	GATC	5 cut(s)	171, 232, 469, 582, 775
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	3 cut(s)	321, 819, 974
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	280, 851, 898
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	24, 65, 596, 1095
BstKTI	GATC	5 cut(s)	174, 235, 472, 585, 778
BstMAI	GTCTC	3 cut(s)	359, 507, 923
BstMBI	GATC	5 cut(s)	171, 232, 469, 582, 775
BstMWI	GCNNNNNNNGC	7 cut(s)	275, 284, 575, 617, 732, 859, 1010
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	869, 1075
BstSFI	CTRYAG	1 cut(s)	1081
BstV1I	GCAGC	3 cut(s)	871, 922, 997
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	4 cut(s)	24, 65, 596, 1095
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	280, 851, 898
Cfr10I	RCCGGY	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	190, 499
CviQI	GTAC	2 cut(s)	190, 499
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	5 cut(s)	173, 234, 471, 584, 777
DpnII	GATC	5 cut(s)	171, 232, 469, 582, 775
Eco130I	CCWWGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	1075
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	359
FaqI	GGGAC	1 cut(s)	1034
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	2 cut(s)	232, 469
FblI	GTMKAC	1 cut(s)	795
Fnu4HI	GCNGC	5 cut(s)	202, 595, 860, 936, 1011
FokI	GGATG	3 cut(s)	31, 72, 603
Fsp4HI	GCNGC	5 cut(s)	202, 595, 860, 936, 1011
FspBI	CTAG	3 cut(s)	378, 393, 713
GluI	GCNGC	5 cut(s)	202, 595, 860, 936, 1011
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	708, 870
HincII	GTYRAC	2 cut(s)	224, 796
HindII	GTYRAC	2 cut(s)	224, 796
HinfI	GANTC	5 cut(s)	6, 212, 786, 1072, 1094
HpaII	CCGG	2 cut(s)	708, 870
Hpy166II	GTNNAC	3 cut(s)	224, 501, 796
Hpy188I	TCNGA	2 cut(s)	237, 942
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	3 cut(s)	224, 501, 796
HpyAV	CCTTC	2 cut(s)	716, 1051
HpyCH4III	ACNGT	3 cut(s)	321, 819, 974
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	4 cut(s)	287, 569, 578, 859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	275, 284, 575, 617, 732, 859, 1010
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	981
Ksp22I	TGATCA	2 cut(s)	232, 469
Kzo9I	GATC	5 cut(s)	171, 232, 469, 582, 775
LmnI	GCTCC	2 cut(s)	881, 958
Lsp1109I	GCAGC	3 cut(s)	871, 922, 997
LweI	GCATC	4 cut(s)	130, 321, 581, 722
MaeI	CTAG	3 cut(s)	378, 393, 713
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	5 cut(s)	173, 234, 471, 584, 777
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	5 cut(s)	171, 232, 469, 582, 775
MboII	GAAGA	4 cut(s)	647, 731, 977, 1066
MhlI	GDGCHC	2 cut(s)	258, 453
MluCI	AATT	7 cut(s)	33, 98, 416, 456, 461, 739, 943
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	801, 936
MnlI	CCTC	5 cut(s)	50, 101, 301, 873, 1023
MroXI	GAANNNNTTC	1 cut(s)	1061
MseI	TTAA	4 cut(s)	152, 336, 738, 951
MslI	CAYNNNNRTG	2 cut(s)	854, 912
MspI	CCGG	2 cut(s)	708, 870
MspR9I	CCNGG	2 cut(s)	871, 1077
MvaI	CCWGG	1 cut(s)	1077
MwoI	GCNNNNNNNGC	7 cut(s)	275, 284, 575, 617, 732, 859, 1010
NciI	CCSGG	1 cut(s)	871
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	5 cut(s)	171, 232, 469, 582, 775
NlaIV	GGNNCC	1 cut(s)	960
NspI	RCATGY	1 cut(s)	853
PaeI	GCATGC	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 978
PdmI	GAANNNNTTC	1 cut(s)	1061
PfeI	GAWTC	4 cut(s)	6, 786, 1072, 1094
PkrI	GCNGC	5 cut(s)	203, 596, 861, 937, 1012
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	1 cut(s)	960
RsaI	GTAC	2 cut(s)	191, 500
RsaNI	GTAC	2 cut(s)	190, 499
RseI	CAYNNNNRTG	2 cut(s)	854, 912
SalI	GTCGAC	1 cut(s)	794
SaqAI	TTAA	4 cut(s)	152, 336, 738, 951
SatI	GCNGC	5 cut(s)	202, 595, 860, 936, 1011
Sau3AI	GATC	5 cut(s)	171, 232, 469, 582, 775
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	871, 1077
SduI	GDGCHC	2 cut(s)	258, 453
SetI	ASST	8 cut(s)	280, 801, 840, 886, 924, 984, 1047, 1088
SfaNI	GCATC	4 cut(s)	130, 321, 581, 722
SfcI	CTRYAG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	2 cut(s)	854, 912
SmlI	CTYRAG	2 cut(s)	761, 864
SmoI	CTYRAG	2 cut(s)	761, 864
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	7 cut(s)	33, 98, 416, 456, 461, 739, 943
SsiI	CCGC	5 cut(s)	186, 201, 216, 510, 594
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	3 cut(s)	378, 393, 713
StyD4I	CCNGG	2 cut(s)	869, 1075
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	3 cut(s)	321, 819, 974
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	1 cut(s)	795
TasI	AATT	7 cut(s)	33, 98, 416, 456, 461, 739, 943
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	204, 597
TfiI	GAWTC	4 cut(s)	6, 786, 1072, 1094
Tru1I	TTAA	4 cut(s)	152, 336, 738, 951
Tru9I	TTAA	4 cut(s)	152, 336, 738, 951
TscAI	CASTG	1 cut(s)	685
TseI	GCWGC	3 cut(s)	859, 935, 1010
TspDTI	ATGAA	3 cut(s)	428, 530, 761
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	685
XapI	RAATTY	3 cut(s)	33, 98, 416
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1083
XmiI	GTMKAC	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	1061
XspI	CTAG	3 cut(s)	378, 393, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.