Prupe.5G118100_v2.0.a1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
11939642 .. 11940628
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G118100.1

Sequence Viewer

Length: 987 bp
ATGAACAAGAGGCAGAGAAGCATCACCGACCGCACTTCCCGCGAAGCCGCCGCAATTTCCTCCTCCCACGACCCTTCCTCCAGCCACTACTCCTCCGAAGGCGGAAGCACGGAGGAGGAAGAGGGCATGTTCACAAGGAGCTTGTGCCTTTCCTACGGCTCCATCTCCGTCATGGGACGGCGGAGAAACATGAAAGACGCCGTCTCCCTAGCGAAAGTAGATTCGTACCAGTTCTTCGCCGTGTACGACGGCCACGGTGGCTCCTCCGTCTCCAACGCCTGCCGCGACCGCCTGCACCACCTCCTGGAGCAGGAGGTGGAGCAATGGAAACTCGGCGGCAAGGGAGCGGTCGATTGGGAGAAGGTCATGACCGCGTGCTTTACCAAAATGGACGAGGAGGTCGGCGGCGAATCCGGCAGTACCCCCGCCGACGACGATACGGACACAAATTGGGGGAACACGGTGGGGTCCAGCGCGGTGGTGGTGATGGTGGGGCAAAATGAGGTCGTCGTGGCCAATTCCGGAAACTCACGTGCCGTCCTCTGCCGTGACGGCGTCGCTACTCCCCTGTCACGTGACCACAAGCCGGACCTCCCCGACGAGCGGGAGCGGGTGGAGGCGGCGGGCGGGAGAGTGATCAATTGGAACGGCTACCGCGTTCTGGGAGTTCTGGCGACGTCGCGGTCGATCGGCGACCACTACTTGAAGCCGTACGTCATATCGGAGCCGGAGGTGACGATCAGCGAGAGGACGGAATGCTGCGATTTTCTGGTGATCGCGAGCGACGGACTTTGGGATGTCGTAACGAATGAGTGCGCGTGCCAGGTGGTGAGGAGGTGCCTGGATGCGCAGACGAAGAGGCAGTTGTCGGAGGAGATGAGCGGCTCGAGCTCGGCGCCGGCTAATGCAGCGGCGCTGCTGGCGCAGCTGGCTTTGGCGCGAGGCAGTAAAGATAATATTACTATTATCGTAGCTGAGCTTGGTTGA

Protein Analysis

329

Amino Acids

35.43

Weight (kDa)

5.07

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017300)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04500
malus_domestica MD06G1106000.v1.1
prunus_persica Prupe.5G118100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194961
rosa_laevigata RLG00000004155
rosa_multiflora Rmu_ssc0000157.1_g000001
rosa_roxburghii Rroxscaffold_3G00260840
rosa_rugosa Rorug07G0019500
rosa_samantha Rh7AG147300 Rh7BG147900 Rh7CG151500 Rh7DG148400
rosa_wichuraiana Rw7G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 398, 682
AatII GACGTC 1 cut(s) 680
Acc16I TGCGCA 1 cut(s) 849
AccB1I GGYRCC 2 cut(s) 837, 895
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 4 cut(s) 347, 604, 610, 882
AccII CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
AccIII TCCGGA 1 cut(s) 521
AcoI YGGCCR 2 cut(s) 250, 513
AcvI CACGTG 2 cut(s) 533, 575
AcyI GRCGYC 4 cut(s) 198, 555, 677, 896
AfaI GTAC 4 cut(s) 227, 245, 421, 713
AfiI CCNNNNNNNGG 5 cut(s) 304, 310, 586, 603, 661
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 3 cut(s) 303, 822, 840
AluBI AGCT 5 cut(s) 141, 891, 928, 974, 979
AluI AGCT 5 cut(s) 141, 891, 928, 974, 979
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 2 cut(s) 208, 274
Ama87I CYCGRG 1 cut(s) 886
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 2 cut(s) 250, 513
ApeKI GCWGC 4 cut(s) 759, 908, 916, 925
AspLEI GCGC 7 cut(s) 476, 818, 850, 898, 916, 925, 940
AspS9I GGNCC 2 cut(s) 468, 589
AsuHPI GGTGA 5 cut(s) 16, 496, 745, 784, 841
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 2 cut(s) 468, 589
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 2 cut(s) 837, 895
BanII GRGCYC 1 cut(s) 893
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbrPI CACGTG 2 cut(s) 533, 575
Bbv12I GWGCWC 1 cut(s) 893
BbvI GCAGC 4 cut(s) 746, 903, 920, 937
BccI CCATC 2 cut(s) 170, 481
BciT130I CCWGG 3 cut(s) 305, 824, 842
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 208, 274
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 2 cut(s) 899, 917
BglI GCCNNNNNGGC 2 cut(s) 258, 552
BlpI GCTNAGC 1 cut(s) 975
Bme1390I CCNGG 3 cut(s) 305, 824, 842
Bme18I GGWCC 2 cut(s) 468, 589
BmeT110I CYCGRG 1 cut(s) 886
BmgT120I GGNCC 2 cut(s) 468, 589
BmiI GGNNCC 6 cut(s) 160, 262, 469, 726, 839, 897
BmrFI CCNGG 3 cut(s) 305, 824, 842
BmsI GCATC 2 cut(s) 30, 835
BpmI CTGGAG 2 cut(s) 64, 326
Bpu1102I GCTNAGC 1 cut(s) 975
BsaAI YACGTR 2 cut(s) 533, 575
BsaHI GRCGYC 4 cut(s) 198, 555, 677, 896
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 8 cut(s) 62, 77, 92, 107, 188, 218, 245, 275
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 310, 586, 603, 661
Bse118I RCCGGY 1 cut(s) 898
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 3 cut(s) 305, 824, 842
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 802, 850
BseLI CCNNNNNNNGG 5 cut(s) 304, 310, 586, 603, 661
BseMI GCAATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 966
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 7 cut(s) 52, 82, 128, 253, 410, 847, 887
BseXI GCAGC 4 cut(s) 746, 903, 920, 937
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
Bsh1285I CGRYCG 5 cut(s) 31, 289, 351, 686, 690
BshFI GGCC 2 cut(s) 252, 515
BshNI GGYRCC 2 cut(s) 837, 895
BsiEI CGRYCG 5 cut(s) 31, 289, 351, 686, 690
BsiHKAI GWGCWC 1 cut(s) 893
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 5 cut(s) 414, 522, 587, 728, 899
BsiWI CGTACG 1 cut(s) 711
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 5 cut(s) 304, 310, 586, 603, 661
BsmAI GTCTC 2 cut(s) 208, 274
BsmBI CGTCTC 2 cut(s) 208, 274
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 2 cut(s) 252, 515
BsoBI CYCGRG 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 893
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 4 cut(s) 636, 687, 738, 774
Bsp1720I GCTNAGC 1 cut(s) 975
Bsp68I TCGCGA 1 cut(s) 779
BspANI GGCC 2 cut(s) 252, 515
BspCNI CTCAG 1 cut(s) 967
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 6 cut(s) 160, 262, 469, 726, 839, 897
BspT107I GGYRCC 2 cut(s) 837, 895
BsrBI CCGCTC 4 cut(s) 347, 604, 610, 882
BsrDI GCAATG 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 898
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 898
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 636, 687, 738, 774
BssNI GRCGYC 4 cut(s) 198, 555, 677, 896
Bst2UI CCWGG 3 cut(s) 305, 824, 842
Bst4CI ACNGT 2 cut(s) 257, 463
Bst6I CTCTTC 2 cut(s) 114, 851
BstACI GRCGYC 4 cut(s) 198, 555, 677, 896
BstBAI YACGTR 2 cut(s) 533, 575
BstC8I GCNNGC 9 cut(s) 280, 293, 376, 625, 781, 820, 900, 921, 930
BstDEI CTNAG 1 cut(s) 975
BstDSI CCRYGG 1 cut(s) 253
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 802, 850
BstFNI CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
BstH2I RGCGCY 2 cut(s) 899, 917
BstHHI GCGC 7 cut(s) 476, 818, 850, 898, 916, 925, 940
BstKTI GATC 4 cut(s) 639, 690, 741, 777
BstMAI GTCTC 2 cut(s) 208, 274
BstMBI GATC 4 cut(s) 636, 687, 738, 774
BstMCI CGRYCG 5 cut(s) 31, 289, 351, 686, 690
BstNI CCWGG 3 cut(s) 305, 824, 842
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 303, 822, 840
BstUI CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
BstV1I GCAGC 4 cut(s) 746, 903, 920, 937
BstXI CCANNNNNNTGG 1 cut(s) 478
BsuRI GGCC 2 cut(s) 252, 515
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 802, 850
BtuMI TCGCGA 1 cut(s) 779
Cac8I GCNNGC 9 cut(s) 280, 293, 376, 625, 781, 820, 900, 921, 930
CciI TCATGA 1 cut(s) 366
CfoI GCGC 7 cut(s) 476, 818, 850, 898, 916, 925, 940
Cfr10I RCCGGY 1 cut(s) 898
Cfr13I GGNCC 2 cut(s) 468, 589
CseI GACGC 2 cut(s) 206, 544
Csp6I GTAC 4 cut(s) 226, 244, 420, 712
CviAII CATG 4 cut(s) 127, 172, 190, 367
CviQI GTAC 4 cut(s) 226, 244, 420, 712
DdeI CTNAG 1 cut(s) 975
DinI GGCGCC 1 cut(s) 897
DpnI GATC 4 cut(s) 638, 689, 740, 776
DpnII GATC 4 cut(s) 636, 687, 738, 774
DrdI GACNNNNNNGTC 2 cut(s) 398, 682
DseDI GACNNNNNNGTC 2 cut(s) 398, 682
EaeI YGGCCR 2 cut(s) 250, 513
Eam1104I CTCTTC 2 cut(s) 114, 851
EarI CTCTTC 2 cut(s) 114, 851
EciI GGCGGA 2 cut(s) 117, 196
Ecl136II GAGCTC 1 cut(s) 891
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 2 cut(s) 468, 589
Eco53kI GAGCTC 1 cut(s) 891
Eco72I CACGTG 2 cut(s) 533, 575
Eco88I CYCGRG 1 cut(s) 886
EcoICRI GAGCTC 1 cut(s) 891
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 303, 822, 840
EcoT38I GRGCYC 1 cut(s) 893
EgeI GGCGCC 1 cut(s) 897
EheI GGCGCC 1 cut(s) 897
Esp3I CGTCTC 2 cut(s) 208, 274
FaeI CATG 4 cut(s) 130, 175, 193, 370
FaiI YATR 5 cut(s) 128, 173, 191, 368, 719
FaqI GGGAC 1 cut(s) 189
FatI CATG 4 cut(s) 126, 171, 189, 366
FauI CCCGC 6 cut(s) 47, 433, 597, 603, 616, 620
FbaI TGATCA 1 cut(s) 636
FokI GGATG 2 cut(s) 809, 857
FriOI GRGCYC 1 cut(s) 893
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 849
GlaI GCGC 7 cut(s) 475, 817, 849, 897, 915, 924, 939
GsuI CTGGAG 2 cut(s) 64, 326
HaeII RGCGCY 2 cut(s) 899, 917
HaeIII GGCC 2 cut(s) 252, 515
HapII CCGG 5 cut(s) 414, 522, 587, 728, 899
HgaI GACGC 2 cut(s) 206, 544
HhaI GCGC 7 cut(s) 476, 818, 850, 898, 916, 925, 940
Hin1I GRCGYC 4 cut(s) 198, 555, 677, 896
Hin1II CATG 4 cut(s) 130, 175, 193, 370
Hin6I GCGC 7 cut(s) 474, 816, 848, 896, 914, 923, 938
HinP1I GCGC 7 cut(s) 474, 816, 848, 896, 914, 923, 938
HinfI GANTC 2 cut(s) 221, 410
HpaII CCGG 5 cut(s) 414, 522, 587, 728, 899
HphI GGTGA 5 cut(s) 16, 496, 745, 784, 841
Hpy166II GTNNAC 2 cut(s) 132, 244
Hpy188I TCNGA 3 cut(s) 97, 724, 871
Hpy188III TCNNGA 3 cut(s) 367, 522, 778
Hpy8I GTNNAC 2 cut(s) 132, 244
Hpy99I CGWCG 9 cut(s) 251, 434, 437, 512, 560, 602, 679, 682, 788
HpyAV CCTTC 3 cut(s) 84, 92, 355
HpyCH4III ACNGT 2 cut(s) 257, 463
HpyCH4IV ACGT 4 cut(s) 532, 574, 677, 714
HpyCH4V TGCA 2 cut(s) 295, 908
HpyF3I CTNAG 1 cut(s) 975
HpySE526I ACGT 4 cut(s) 532, 574, 677, 714
Hsp92I GRCGYC 4 cut(s) 198, 555, 677, 896
Hsp92II CATG 4 cut(s) 130, 175, 193, 370
HspAI GCGC 7 cut(s) 474, 816, 848, 896, 914, 923, 938
KasI GGCGCC 1 cut(s) 895
Kpn2I TCCGGA 1 cut(s) 521
KroI GCCGGC 1 cut(s) 898
KroNI GCCGGC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 4 cut(s) 636, 687, 738, 774
LmnI GCTCC 8 cut(s) 138, 164, 266, 307, 319, 344, 607, 724
Lsp1109I GCAGC 4 cut(s) 746, 903, 920, 937
LweI GCATC 2 cut(s) 30, 835
MaeI CTAG 1 cut(s) 209
MaeII ACGT 4 cut(s) 532, 574, 677, 714
MaeIII GTNAC 5 cut(s) 548, 570, 575, 733, 802
MalI GATC 4 cut(s) 638, 689, 740, 776
MbiI CCGCTC 4 cut(s) 347, 604, 610, 882
MboI GATC 4 cut(s) 636, 687, 738, 774
MboII GAAGA 3 cut(s) 131, 226, 868
MfeI CAATTG 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 893
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 4 cut(s) 54, 448, 517, 640
MluNI TGGCCA 1 cut(s) 515
Mly113I GGCGCC 1 cut(s) 896
MmeI TCCRAC 2 cut(s) 297, 849
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 898
MscI TGGCCA 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 911, 928
MspI CCGG 5 cut(s) 414, 522, 587, 728, 899
MspR9I CCNGG 3 cut(s) 305, 824, 842
MunI CAATTG 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 3 cut(s) 305, 824, 842
MvnI CGCG 9 cut(s) 42, 285, 374, 476, 657, 682, 779, 818, 940
NaeI GCCGGC 1 cut(s) 900
NarI GGCGCC 1 cut(s) 896
NdeII GATC 4 cut(s) 636, 687, 738, 774
NgoMIV GCCGGC 1 cut(s) 898
NlaIII CATG 4 cut(s) 130, 175, 193, 370
NlaIV GGNNCC 6 cut(s) 160, 262, 469, 726, 839, 897
NmeAIII GCCGAG 2 cut(s) 312, 872
NmuCI GTSAC 4 cut(s) 548, 570, 575, 733
NruI TCGCGA 1 cut(s) 779
NsbI TGCGCA 1 cut(s) 849
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 886
PagI TCATGA 1 cut(s) 366
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 282, 654, 683
PctI GAATGC 1 cut(s) 761
PdiI GCCGGC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 221, 410
Pfl23II CGTACG 1 cut(s) 711
PflFI GACNNNGTC 2 cut(s) 200, 554
PflMI CCANNNNNTGG 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 303
Ple19I CGATCG 1 cut(s) 690
PluTI GGCGCC 1 cut(s) 899
PmaCI CACGTG 2 cut(s) 533, 575
PmlI CACGTG 2 cut(s) 533, 575
Ppu21I YACGTR 2 cut(s) 533, 575
Psp124BI GAGCTC 1 cut(s) 893
Psp6I CCWGG 3 cut(s) 303, 822, 840
PspCI CACGTG 2 cut(s) 533, 575
PspGI CCWGG 3 cut(s) 303, 822, 840
PspLI CGTACG 1 cut(s) 711
PspN4I GGNNCC 6 cut(s) 160, 262, 469, 726, 839, 897
PspPI GGNCC 2 cut(s) 468, 589
PspXI VCTCGAGB 1 cut(s) 886
PsyI GACNNNGTC 2 cut(s) 200, 554
PvuI CGATCG 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 928
RruI TCGCGA 1 cut(s) 779
RsaI GTAC 4 cut(s) 227, 245, 421, 713
RsaNI GTAC 4 cut(s) 226, 244, 420, 712
SacI GAGCTC 1 cut(s) 893
Sau3AI GATC 4 cut(s) 636, 687, 738, 774
Sau96I GGNCC 2 cut(s) 468, 589
ScrFI CCNGG 3 cut(s) 305, 824, 842
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 2 cut(s) 30, 835
SfoI GGCGCC 1 cut(s) 897
Sfr274I CTCGAG 1 cut(s) 886
SinI GGWCC 2 cut(s) 468, 589
SlaI CTCGAG 1 cut(s) 886
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
Sse9I AATT 4 cut(s) 54, 448, 517, 640
SspDI GGCGCC 1 cut(s) 895
SspI AATATT 1 cut(s) 958
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 893
StyD4I CCNGG 3 cut(s) 303, 822, 840
TaaI ACNGT 2 cut(s) 257, 463
TaiI ACGT 4 cut(s) 535, 577, 680, 717
TaqI TCGA 3 cut(s) 351, 686, 887
TasI AATT 4 cut(s) 54, 448, 517, 640
TauI GCSGC 8 cut(s) 50, 53, 285, 339, 408, 623, 885, 914
TfiI GAWTC 2 cut(s) 221, 410
TseFI GTSAC 4 cut(s) 548, 570, 575, 733
TseI GCWGC 4 cut(s) 759, 908, 916, 925
Tsp45I GTSAC 4 cut(s) 548, 570, 575, 733
TspDTI ATGAA 2 cut(s) 17, 206
TspGWI ACGGA 6 cut(s) 125, 157, 256, 455, 767, 801
Tth111I GACNNNGTC 2 cut(s) 200, 554
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 468, 589
XagI CCTNNNNNAGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 478
XhoI CTCGAG 1 cut(s) 886
XspI CTAG 1 cut(s) 209
ZraI GACGTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.