Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000157.1

Orthogroup ID

OG0017300

Physical Location & Seq

Genomic Coordinates Reverse (-)

1070 .. 1861

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgaaggatgccgtggccgtcaccaagctcgacgagcaccacttcttcgccgtctacgacggccacggcggctcatcggtctccaacgcctgccgcgaccgcctgcaccagctcctcgctcaggaggtcgagccctggatacgcggcagcgacagtaccggaggggtcgactgggagaaggccctggcctcctgcttcaccaagatggataacgaggtcggcgccgccgccgccgagatggagggctgtgtgaacacagtggggtccagcgcagtggtggctatcataggaaaggaggaaatcgtggtagcgaactccggcaactcacgtgctgttctgtgccgcgacggcgttgctatacctctgtcacgtgaccacaaccctgaccgtccggacgagaaggagagagtggaggcggcgggagggagagtgacagactggaaaggctgccgtgtgctgggactgctggcgacgtcgcggtcaatcggagaccattacctgaagccgtacgtgatatcggagccggaggtgaccatcagtaagaggacagggtcgtgcgactttctggtgatagcgagcgacggactttgggacgtcgtatcgaatgagtttgcgtgtcaggttgtgacgagatgtctggatgcacaaattaagttgaagttttcggaggggatgagcggaggtccggcggcaaatgcggcggccttgctggcgcaactggcactggctcgagggagcaaagataatatcaccgtcatagtggttgagctcaagaagtccatgaccgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001691 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009791 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019208 GO:0019212 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023057 GO:0030234 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065009 GO:0071695 GO:0071704 GO:0080050 GO:0098772 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1902040 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000243 GO:2000693

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

263

Amino Acids

27.97

Weight (kDa)

5.43

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017300)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04500
malus_domestica	MD06G1106000.v1.1
prunus_persica	Prupe.5G118100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194961
rosa_laevigata	RLG00000004155
rosa_multiflora	Rmu_ssc0000157.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260840
rosa_rugosa	Rorug07G0019500
rosa_samantha	Rh7AG147300 Rh7BG147900 Rh7CG151500 Rh7DG148400
rosa_wichuraiana	Rw7G012560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	478
AatII	GACGTC	2 cut(s)	476, 597
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	678
AccI	GTMKAC	2 cut(s)	54, 168
AccII	CGCG	4 cut(s)	96, 144, 345, 478
AccIII	TCCGGA	1 cut(s)	391
AcoI	YGGCCR	2 cut(s)	15, 61
AcuI	CTGAAG	1 cut(s)	521
AcvI	CACGTG	2 cut(s)	329, 371
AcyI	GRCGYC	3 cut(s)	222, 473, 594
AfaI	GTAC	2 cut(s)	157, 509
AfiI	CCNNNNNNNGG	2 cut(s)	121, 457
AgsI	TTSAA	1 cut(s)	658
AhdI	GACNNNNNGTC	1 cut(s)	633
AjnI	CCWGG	2 cut(s)	134, 183
AluBI	AGCT	3 cut(s)	28, 112, 769
AluI	AGCT	3 cut(s)	28, 112, 769
Alw21I	GWGCWC	2 cut(s)	39, 771
Alw26I	GTCTC	2 cut(s)	85, 483
Ama87I	CYCGRG	1 cut(s)	729
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	5 cut(s)	15, 61, 180, 186, 702
ApeKI	GCWGC	2 cut(s)	147, 447
AspLEI	GCGC	3 cut(s)	224, 272, 715
AspS9I	GGNCC	3 cut(s)	181, 264, 683
AsuHPI	GGTGA	5 cut(s)	13, 190, 541, 580, 742
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	2 cut(s)	264, 683
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	135, 771
BbrPI	CACGTG	2 cut(s)	329, 371
Bbv12I	GWGCWC	2 cut(s)	39, 771
BbvI	GCAGC	2 cut(s)	159, 434
BccI	CCATC	3 cut(s)	199, 232, 542
BceAI	ACGGC	7 cut(s)	2, 35, 76, 82, 364, 435, 490
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	136, 185
BciVI	GTATCC	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	85, 483
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	132
BglI	GCCNNNNNGGC	3 cut(s)	69, 348, 710
Bme1390I	CCNGG	2 cut(s)	136, 185
Bme18I	GGWCC	2 cut(s)	264, 683
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	3 cut(s)	181, 264, 683
BmiI	GGNNCC	3 cut(s)	223, 265, 522
BmrFI	CCNGG	2 cut(s)	136, 185
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	755
BsaAI	YACGTR	3 cut(s)	329, 371, 511
BsaHI	GRCGYC	3 cut(s)	222, 473, 594
BsaI	GGTCTC	2 cut(s)	85, 483
BsaJI	CCNNGG	4 cut(s)	12, 64, 134, 183
BsaWI	WCCGGW	2 cut(s)	158, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 457
Bse1I	ACTGG	4 cut(s)	176, 443, 723, 729
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	136, 185
BseDI	CCNNGG	4 cut(s)	12, 64, 134, 183
BseGI	GGATG	3 cut(s)	13, 646, 678
BseLI	CCNNNNNNNGG	2 cut(s)	121, 457
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	4 cut(s)	176, 443, 723, 729
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	159, 434
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	4 cut(s)	96, 144, 345, 478
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	5 cut(s)	17, 63, 182, 188, 704
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	39, 771
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	5 cut(s)	159, 318, 392, 524, 686
BsiWI	CGTACG	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	474, 605
BslI	CCNNNNNNNGG	2 cut(s)	121, 457
BsmAI	GTCTC	2 cut(s)	85, 483
BsmFI	GGGAC	2 cut(s)	474, 605
BsnI	GGCC	5 cut(s)	17, 63, 182, 188, 704
Bso31I	GGTCTC	2 cut(s)	85, 483
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	3 cut(s)	39, 135, 771
Bsp13I	TCCGGA	1 cut(s)	391
BspANI	GGCC	5 cut(s)	17, 63, 182, 188, 704
BspCNI	CTCAG	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	4 cut(s)	96, 144, 345, 478
BspLI	GGNNCC	3 cut(s)	223, 265, 522
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	2 cut(s)	85, 483
BsrBI	CCGCTC	1 cut(s)	678
BsrI	ACTGG	4 cut(s)	176, 443, 723, 729
BssECI	CCNNGG	4 cut(s)	12, 64, 134, 183
BssNI	GRCGYC	3 cut(s)	222, 473, 594
Bst2UI	CCWGG	2 cut(s)	136, 185
Bst4CI	ACNGT	4 cut(s)	155, 259, 389, 754
BstACI	GRCGYC	3 cut(s)	222, 473, 594
BstBAI	YACGTR	3 cut(s)	329, 371, 511
BstC8I	GCNNGC	5 cut(s)	91, 104, 468, 577, 711
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	12, 64
BstEII	GGTNACC	1 cut(s)	529
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	13, 646, 678
BstFNI	CGCG	4 cut(s)	96, 144, 345, 478
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	3 cut(s)	224, 272, 715
BstMAI	GTCTC	2 cut(s)	85, 483
BstMCI	CGRYCG	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	136, 185
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	134, 183
BstUI	CGCG	4 cut(s)	96, 144, 345, 478
BstV1I	GCAGC	2 cut(s)	159, 434
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	17, 63, 182, 188, 704
BtgI	CCRYGG	2 cut(s)	12, 64
BtsCI	GGATG	3 cut(s)	13, 646, 678
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	264, 279, 722
Cac8I	GCNNGC	5 cut(s)	91, 104, 468, 577, 711
CfoI	GCGC	3 cut(s)	224, 272, 715
Cfr13I	GGNCC	3 cut(s)	181, 264, 683
Csp6I	GTAC	2 cut(s)	156, 508
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	2 cut(s)	156, 508
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	478
DriI	GACNNNNNGTC	1 cut(s)	633
DseDI	GACNNNNNNGTC	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	15, 61
Eam1105I	GACNNNNNGTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	769
Eco24I	GRGCYC	2 cut(s)	135, 771
Eco31I	GGTCTC	2 cut(s)	85, 483
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	264, 683
Eco53kI	GAGCTC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	521
Eco72I	CACGTG	2 cut(s)	329, 371
Eco88I	CYCGRG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	769
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	134, 183
EcoRV	GATATC	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	135, 771
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	1 cut(s)	784
FaiI	YATR	4 cut(s)	287, 359, 758, 782
FaqI	GGGAC	2 cut(s)	474, 605
FatI	CATG	1 cut(s)	780
FauI	CCCGC	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	54, 168
FokI	GGATG	3 cut(s)	20, 653, 685
FriOI	GRGCYC	2 cut(s)	135, 771
GlaI	GCGC	3 cut(s)	223, 271, 714
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	17, 63, 182, 188, 704
HapII	CCGG	5 cut(s)	159, 318, 392, 524, 686
HhaI	GCGC	3 cut(s)	224, 272, 715
Hin1I	GRCGYC	3 cut(s)	222, 473, 594
Hin1II	CATG	1 cut(s)	784
Hin6I	GCGC	3 cut(s)	222, 270, 713
HinP1I	GCGC	3 cut(s)	222, 270, 713
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	5 cut(s)	159, 318, 392, 524, 686
HphI	GGTGA	5 cut(s)	13, 190, 541, 580, 742
Hpy166II	GTNNAC	3 cut(s)	55, 169, 253
Hpy188I	TCNGA	3 cut(s)	488, 520, 667
Hpy188III	TCNNGA	4 cut(s)	122, 392, 638, 772
Hpy8I	GTNNAC	3 cut(s)	55, 169, 253
Hpy99I	CGWCG	7 cut(s)	35, 62, 350, 475, 478, 584, 599
HpyAV	CCTTC	2 cut(s)	172, 394
HpyCH4III	ACNGT	4 cut(s)	155, 259, 389, 754
HpyCH4IV	ACGT	5 cut(s)	328, 370, 473, 510, 594
HpyCH4V	TGCA	2 cut(s)	106, 644
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	5 cut(s)	328, 370, 473, 510, 594
Hsp92I	GRCGYC	3 cut(s)	222, 473, 594
Hsp92II	CATG	1 cut(s)	784
HspAI	GCGC	3 cut(s)	222, 270, 713
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	117, 520, 735
Lsp1109I	GCAGC	2 cut(s)	159, 434
LweI	GCATC	1 cut(s)	631
MaeII	ACGT	5 cut(s)	328, 370, 473, 510, 594
MaeIII	GTNAC	6 cut(s)	19, 366, 371, 430, 529, 625
MbiI	CCGCTC	1 cut(s)	678
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	39, 135, 771
MluCI	AATT	1 cut(s)	648
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	108
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	5 cut(s)	159, 318, 392, 524, 686
MspR9I	CCNGG	2 cut(s)	136, 185
MvaI	CCWGG	2 cut(s)	136, 185
MvnI	CGCG	4 cut(s)	96, 144, 345, 478
NarI	GGCGCC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	3 cut(s)	223, 265, 522
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	6 cut(s)	19, 366, 371, 430, 529, 625
PaeR7I	CTCGAG	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 93
Pfl23II	CGTACG	1 cut(s)	507
PflFI	GACNNNGTC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	225
PmaCI	CACGTG	2 cut(s)	329, 371
PmlI	CACGTG	2 cut(s)	329, 371
Ppu21I	YACGTR	3 cut(s)	329, 371, 511
Psp124BI	GAGCTC	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	134, 183
PspCI	CACGTG	2 cut(s)	329, 371
PspEI	GGTNACC	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	134, 183
PspLI	CGTACG	1 cut(s)	507
PspN4I	GGNNCC	3 cut(s)	223, 265, 522
PspPI	GGNCC	3 cut(s)	181, 264, 683
PspXI	VCTCGAGB	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	2 cut(s)	157, 509
RsaNI	GTAC	2 cut(s)	156, 508
RseI	CAYNNNNRTG	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	771
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	651
Sau96I	GGNCC	3 cut(s)	181, 264, 683
ScrFI	CCNGG	2 cut(s)	136, 185
SduI	GDGCHC	3 cut(s)	39, 135, 771
SfaNI	GCATC	1 cut(s)	631
SfoI	GGCGCC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	729
SinI	GGWCC	2 cut(s)	264, 683
SlaI	CTCGAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	729, 770
SmoI	CTYRAG	2 cut(s)	729, 770
Sse9I	AATT	1 cut(s)	648
SspDI	GGCGCC	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	2 cut(s)	134, 183
TaaI	ACNGT	4 cut(s)	155, 259, 389, 754
TaiI	ACGT	5 cut(s)	331, 373, 476, 513, 597
TaqI	TCGA	5 cut(s)	30, 129, 168, 602, 730
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	648
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	264, 279, 729
TseFI	GTSAC	6 cut(s)	19, 366, 371, 430, 529, 625
TseI	GCWGC	2 cut(s)	147, 447
Tsp45I	GTSAC	6 cut(s)	19, 366, 371, 430, 529, 625
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	264, 279, 729
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	264, 683
XagI	CCTNNNNNAGG	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	729
XmiI	GTMKAC	2 cut(s)	54, 168
ZraI	GACGTC	2 cut(s)	474, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.