Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017300

Physical Location & Seq

Genomic Coordinates Forward (+)

12935789 .. 12936421

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGGATGCCGTGGCCGTCACCAAGCTCGACGAGCACCACTTCTTCGCCGTCTACGACGGCCACGGCGGCTCATCGGTCTCCAACGCCTGCCGCGACCGCCTGCACCAGCTCCTCGCTCAGGAGGTCGAGCCCTGGATACGCGGCAGGGACAGTACCGGAGGGGTCGACTGGGAGAAGGCCCTGGCCTCCTGCTTCACCAAGATGGATAACGAGGTCGGCGCCGCCGCCGCGGAGATGGAGGGCTGTGTGAACACAGTGGGGTCCAGCGCAGTGGTGGCGATCATAGGAAAGGAGGAAATCGTGGTAGCGAACTCCAGCAACTCACGTGTTGTTCTGTGCCGCGACGGCGTTGCTATACCTCTGTCACGTGACCACAACCCCGACCGTCCGGACGAGAAGGCGAGAGTGGAGGCGGTGATGCGCTCAAAGCAAGCGCATAATTTAACCCTGAAATATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001691 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009791 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019208 GO:0019212 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023057 GO:0030234 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065009 GO:0071695 GO:0071704 GO:0080050 GO:0098772 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1902040 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000243 GO:2000693

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

154

Amino Acids

16.75

Weight (kDa)

6.06

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	10 - 139	9.4e-23	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017300)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04500
malus_domestica	MD06G1106000.v1.1
prunus_persica	Prupe.5G118100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194961
rosa_laevigata	RLG00000004155
rosa_multiflora	Rmu_ssc0000157.1_g000001
rosa_roxburghii	Rroxscaffold_3G00260840
rosa_rugosa	Rorug07G0019500
rosa_samantha	Rh7AG147300 Rh7BG147900 Rh7CG151500 Rh7DG148400
rosa_wichuraiana	Rw7G012560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	54, 168
AccII	CGCG	4 cut(s)	96, 144, 233, 345
AccIII	TCCGGA	1 cut(s)	391
AcoI	YGGCCR	2 cut(s)	15, 61
AcvI	CACGTG	2 cut(s)	329, 371
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	134, 183
AluBI	AGCT	2 cut(s)	28, 112
AluI	AGCT	2 cut(s)	28, 112
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	4 cut(s)	15, 61, 180, 186
AspLEI	GCGC	4 cut(s)	224, 272, 426, 439
AspS9I	GGNCC	2 cut(s)	181, 264
AsuHPI	GGTGA	3 cut(s)	13, 190, 430
AvaII	GGWCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	135
BbrPI	CACGTG	2 cut(s)	329, 371
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	2 cut(s)	199, 232
BceAI	ACGGC	5 cut(s)	2, 35, 76, 82, 364
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	136, 185
BciVI	GTATCC	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	132
BglI	GCCNNNNNGGC	2 cut(s)	69, 348
BisI	GCNGC	7 cut(s)	70, 94, 145, 225, 228, 231, 343
BlsI	GCNGC	7 cut(s)	71, 95, 146, 226, 229, 232, 344
Bme1390I	CCNGG	2 cut(s)	136, 185
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	181, 264
BmiI	GGNNCC	2 cut(s)	223, 265
BmrFI	CCNGG	2 cut(s)	136, 185
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	329, 371
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	5 cut(s)	12, 64, 134, 183, 231
BsaWI	WCCGGW	2 cut(s)	158, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	176
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	136, 185
BseDI	CCNNGG	5 cut(s)	12, 64, 134, 183, 231
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	4 cut(s)	96, 144, 233, 345
Bsh1285I	CGRYCG	2 cut(s)	100, 388
BshFI	GGCC	4 cut(s)	17, 63, 182, 188
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	2 cut(s)	100, 388
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	159, 392
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	4 cut(s)	17, 63, 182, 188
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	39, 135
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	4 cut(s)	17, 63, 182, 188
BspCNI	CTCAG	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	4 cut(s)	96, 144, 233, 345
BspLI	GGNNCC	2 cut(s)	223, 265
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	5 cut(s)	12, 64, 134, 183, 231
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	136, 185
Bst4CI	ACNGT	3 cut(s)	155, 259, 389
BstACI	GRCGYC	1 cut(s)	222
BstBAI	YACGTR	2 cut(s)	329, 371
BstC8I	GCNNGC	3 cut(s)	91, 104, 435
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	3 cut(s)	12, 64, 231
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	4 cut(s)	96, 144, 233, 345
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	224, 272, 426, 439
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	2 cut(s)	100, 388
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 69, 99, 230, 278, 348, 430
BstNI	CCWGG	2 cut(s)	136, 185
BstSCI	CCNGG	2 cut(s)	134, 183
BstUI	CGCG	4 cut(s)	96, 144, 233, 345
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	17, 63, 182, 188
BtgI	CCRYGG	3 cut(s)	12, 64, 231
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	264, 279
Cac8I	GCNNGC	3 cut(s)	91, 104, 435
CfoI	GCGC	4 cut(s)	224, 272, 426, 439
Cfr13I	GGNCC	2 cut(s)	181, 264
Cfr42I	CCGCGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	156
CviJI	RGCY	9 cut(s)	17, 28, 63, 72, 112, 133, 182, 188, 246
CviKI_1	RGCY	9 cut(s)	17, 28, 63, 72, 112, 133, 182, 188, 246
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	15, 61
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	264
Eco72I	CACGTG	2 cut(s)	329, 371
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	134, 183
EcoT38I	GRGCYC	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaiI	YATR	3 cut(s)	287, 359, 441
FaqI	GGGAC	1 cut(s)	164
FblI	GTMKAC	2 cut(s)	54, 168
Fnu4HI	GCNGC	7 cut(s)	70, 94, 145, 225, 228, 231, 343
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	7 cut(s)	70, 94, 145, 225, 228, 231, 343
GlaI	GCGC	4 cut(s)	223, 271, 425, 438
GluI	GCNGC	7 cut(s)	70, 94, 145, 225, 228, 231, 343
GsuI	CTGGAG	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	17, 63, 182, 188
HapII	CCGG	2 cut(s)	159, 392
HhaI	GCGC	4 cut(s)	224, 272, 426, 439
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	4 cut(s)	222, 270, 424, 437
HinP1I	GCGC	4 cut(s)	222, 270, 424, 437
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	159, 392
HphI	GGTGA	3 cut(s)	13, 190, 430
Hpy166II	GTNNAC	3 cut(s)	55, 169, 253
Hpy188III	TCNNGA	2 cut(s)	122, 392
Hpy8I	GTNNAC	3 cut(s)	55, 169, 253
Hpy99I	CGWCG	3 cut(s)	35, 62, 350
HpyAV	CCTTC	2 cut(s)	172, 394
HpyCH4III	ACNGT	3 cut(s)	155, 259, 389
HpyCH4IV	ACGT	2 cut(s)	328, 370
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 69, 99, 230, 278, 348, 430
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	328, 370
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	4 cut(s)	222, 270, 424, 437
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	117
LweI	GCATC	1 cut(s)	411
MaeII	ACGT	2 cut(s)	328, 370
MaeIII	GTNAC	3 cut(s)	19, 366, 371
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	39, 135
MluCI	AATT	1 cut(s)	442
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	118, 125, 155, 199, 208, 235, 289, 372, 406
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	159, 392
MspR9I	CCNGG	2 cut(s)	136, 185
MvaI	CCWGG	2 cut(s)	136, 185
MvnI	CGCG	4 cut(s)	96, 144, 233, 345
MwoI	GCNNNNNNNGC	7 cut(s)	34, 69, 99, 230, 278, 348, 430
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	223, 265
NmuCI	GTSAC	3 cut(s)	19, 366, 371
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 93
PkrI	GCNGC	7 cut(s)	71, 95, 146, 226, 229, 232, 344
PluTI	GGCGCC	1 cut(s)	225
PmaCI	CACGTG	2 cut(s)	329, 371
PmlI	CACGTG	2 cut(s)	329, 371
Ppu21I	YACGTR	2 cut(s)	329, 371
Psp6I	CCWGG	2 cut(s)	134, 183
PspCI	CACGTG	2 cut(s)	329, 371
PspGI	CCWGG	2 cut(s)	134, 183
PspN4I	GGNNCC	2 cut(s)	223, 265
PspPI	GGNCC	2 cut(s)	181, 264
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	203
SacII	CCGCGG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	7 cut(s)	70, 94, 145, 225, 228, 231, 343
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	181, 264
ScrFI	CCNGG	2 cut(s)	136, 185
SduI	GDGCHC	2 cut(s)	39, 135
SetI	ASST	7 cut(s)	30, 114, 129, 219, 331, 364, 373
SfaNI	GCATC	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	223
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	442
SspDI	GGCGCC	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	134, 183
TaaI	ACNGT	3 cut(s)	155, 259, 389
TaiI	ACGT	2 cut(s)	331, 373
TaqI	TCGA	3 cut(s)	30, 129, 168
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	442
TauI	GCSGC	7 cut(s)	72, 96, 147, 227, 230, 233, 345
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	264, 279
TseFI	GTSAC	3 cut(s)	19, 366, 371
Tsp45I	GTSAC	3 cut(s)	19, 366, 371
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	264, 279
VpaK11BI	GGWCC	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmiI	GTMKAC	2 cut(s)	54, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.