Rh7AG147300

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
11948780 .. 11949832
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG147300.1

Sequence Viewer

Length: 1053 bp
ATGGAGAGCTTGAATCCACAGGGAATCGAGCCTCCAAGCTTCGACGAGTGCCACATAAACAAGAGGCAGCGGAGCATTGACCGGAGTGCCGCTATTTCCAAGTTCCGTCAAACCGGGGAATCCTCCTCCGGTCAATGGTCGGAGGAGACGGGCATCACCACCGAGATTATGATGTCCCAAGAAGAAGAGGATAAAGATGTGAGTAAAAGCTCCCCGTGCGAATCCTACGGCTCGATATCGGTGATCGGGCGGCGGAGGGTGATGAAGGATGCCGTGGCCGTCACCAAGCTCGACGAGCACCACTTCTTCGCCGTCTACGACGGCCACGGCGGCTCCTCGGTCTCCAACGCCTGCCGCGACCGCCTGCACCAGCTCCTCGCTCAGGAGGTCGAGCCCTGGATACGTGGCAGCGACAGTACCGGAGGGGTCGACTGGGAGAAGGCCCTGGCCTCCTGCTTCACCAAGATGGATAACGAGGTCGGCGCCGCCGCCGCAGAGATGGAGGGCTGTGTTAACACAGTGGGGTCCAGCGCCGTGGTGGCGATCATAGGAAAGGAGGAAATCGTGGTAGCGAACTCCGGCAACTCACGTGCTGTTCTGTGCCGCGACGGCGTTGCTATACCTCTGTCACGTGACCACAACCCCGACCGTCCGGATGAGAAGGAGAGAGTAGAGGCGGCGGGAGGGAGAGTGATAGACTGGAAAGGCTGCCGTGTGCTGGGAGTGCTGGCGACGTCGCGGTCAATCGGAGACCATTACTTGAAGCCGTACGTGATATCGGAGCCGGAGGTGACCATCAGTAAGAGGACAGGGTCGTGCGACTTTCTGGTGATAGCGAGCGACGGACTTTGGGACGTCGTATCGAATGAGTTTGCGTGTCAGGTTGTGACGAGATGTTTGGATGCACAAATTAAGTTGAAGTTTTCGGAGGGGATGAGCGGAGGTCCGGCGGCAAATGCGGCGGCCTTGCTGGCGCAACTGGCACTGGCTCGAGGGAGCAAAGATAATATCACCGTCATAGTGGTTGAGCTCAAGAAGTCCATGACCGCCTGA

Protein Analysis

350

Amino Acids

37.7

Weight (kDa)

5.25

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 90 - 337 5.7e-58 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017300)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04500
malus_domestica MD06G1106000.v1.1
prunus_persica Prupe.5G118100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194961
rosa_laevigata RLG00000004155
rosa_multiflora Rmu_ssc0000157.1_g000001
rosa_roxburghii Rroxscaffold_3G00260840
rosa_rugosa Rorug07G0019500
rosa_samantha Rh7AG147300 Rh7BG147900 Rh7CG151500 Rh7DG148400
rosa_wichuraiana Rw7G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 739
AatII GACGTC 2 cut(s) 737, 858
AccB1I GGYRCC 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 939
AccI GTMKAC 2 cut(s) 315, 429
AccII CGCG 3 cut(s) 357, 606, 739
AccIII TCCGGA 1 cut(s) 652
AcoI YGGCCR 2 cut(s) 276, 322
AcvI CACGTG 2 cut(s) 590, 632
AcyI GRCGYC 3 cut(s) 483, 734, 855
AfaI GTAC 2 cut(s) 418, 770
AfiI CCNNNNNNNGG 3 cut(s) 135, 382, 718
AgsI TTSAA 3 cut(s) 13, 763, 919
AjnI CCWGG 2 cut(s) 395, 444
AluBI AGCT 6 cut(s) 9, 39, 210, 289, 373, 1030
AluI AGCT 6 cut(s) 9, 39, 210, 289, 373, 1030
Alw21I GWGCWC 2 cut(s) 300, 1032
Alw26I GTCTC 3 cut(s) 140, 346, 744
Ama87I CYCGRG 1 cut(s) 990
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 5 cut(s) 276, 322, 441, 447, 963
ApeKI GCWGC 3 cut(s) 67, 408, 708
ArsI GACNNNNNNTTYG 2 cut(s) 880, 912
AspLEI GCGC 3 cut(s) 485, 533, 976
AspS9I GGNCC 3 cut(s) 442, 525, 944
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 8 cut(s) 148, 253, 271, 274, 451, 802, 841, 1003
AvaI CYCGRG 1 cut(s) 990
AvaII GGWCC 2 cut(s) 525, 944
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 2 cut(s) 396, 1032
BbrPI CACGTG 2 cut(s) 590, 632
Bbv12I GWGCWC 2 cut(s) 300, 1032
BbvI GCAGC 3 cut(s) 79, 420, 695
BccI CCATC 3 cut(s) 460, 493, 803
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 397, 446
BciVI GTATCC 1 cut(s) 393
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 140, 346, 744
BfoI RGCGCY 2 cut(s) 486, 534
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 4 cut(s) 330, 539, 609, 971
Bme1390I CCNGG 3 cut(s) 115, 397, 446
Bme18I GGWCC 2 cut(s) 525, 944
BmeT110I CYCGRG 1 cut(s) 990
BmgT120I GGNCC 3 cut(s) 442, 525, 944
BmiI GGNNCC 4 cut(s) 334, 484, 526, 783
BmrFI CCNGG 3 cut(s) 115, 397, 446
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 3 cut(s) 162, 259, 892
BmuI ACTGGG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 1 cut(s) 115
BsaAI YACGTR 4 cut(s) 404, 590, 632, 772
BsaHI GRCGYC 3 cut(s) 483, 734, 855
BsaI GGTCTC 2 cut(s) 346, 744
BsaJI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BsaWI WCCGGW 4 cut(s) 81, 128, 419, 652
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 675, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 382, 718
Bse1I ACTGG 4 cut(s) 437, 704, 984, 990
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 2 cut(s) 397, 446
BseDI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BseGI GGATG 4 cut(s) 274, 661, 907, 939
BseLI CCNNNNNNNGG 3 cut(s) 135, 382, 718
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 4 cut(s) 437, 704, 984, 990
BseRI GAGGAG 4 cut(s) 115, 158, 325, 365
BseXI GCAGC 3 cut(s) 79, 420, 695
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 3 cut(s) 357, 606, 739
Bsh1285I CGRYCG 2 cut(s) 361, 649
BshFI GGCC 5 cut(s) 278, 324, 443, 449, 965
BshNI GGYRCC 1 cut(s) 482
BsiEI CGRYCG 2 cut(s) 361, 649
BsiHKAI GWGCWC 2 cut(s) 300, 1032
BsiHKCI CYCGRG 1 cut(s) 990
BsiSI CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
BsiWI CGTACG 1 cut(s) 768
BslFI GGGAC 2 cut(s) 160, 866
BslI CCNNNNNNNGG 3 cut(s) 135, 382, 718
BsmAI GTCTC 3 cut(s) 140, 346, 744
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 160, 866
BsnI GGCC 5 cut(s) 278, 324, 443, 449, 965
Bso31I GGTCTC 2 cut(s) 346, 744
BsoBI CYCGRG 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 300, 396, 1032
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 2 cut(s) 243, 543
BspANI GGCC 5 cut(s) 278, 324, 443, 449, 965
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 3 cut(s) 357, 606, 739
BspLI GGNNCC 4 cut(s) 334, 484, 526, 783
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 2 cut(s) 346, 744
BsrBI CCGCTC 1 cut(s) 939
BsrI ACTGG 4 cut(s) 437, 704, 984, 990
BssECI CCNNGG 7 cut(s) 114, 273, 325, 336, 395, 444, 534
BssMI GATC 2 cut(s) 243, 543
BssNI GRCGYC 3 cut(s) 483, 734, 855
Bst2UI CCWGG 2 cut(s) 397, 446
Bst4CI ACNGT 4 cut(s) 416, 520, 650, 1015
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 3 cut(s) 483, 734, 855
BstBAI YACGTR 4 cut(s) 404, 590, 632, 772
BstC8I GCNNGC 5 cut(s) 352, 365, 729, 838, 972
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 3 cut(s) 273, 325, 534
BstEII GGTNACC 1 cut(s) 790
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 4 cut(s) 274, 661, 907, 939
BstFNI CGCG 3 cut(s) 357, 606, 739
BstH2I RGCGCY 2 cut(s) 486, 534
BstHHI GCGC 3 cut(s) 485, 533, 976
BstKTI GATC 2 cut(s) 246, 546
BstMAI GTCTC 3 cut(s) 140, 346, 744
BstMBI GATC 2 cut(s) 243, 543
BstMCI CGRYCG 2 cut(s) 361, 649
BstNI CCWGG 2 cut(s) 397, 446
BstPI GGTNACC 1 cut(s) 790
BstSCI CCNGG 3 cut(s) 113, 395, 444
BstUI CGCG 3 cut(s) 357, 606, 739
BstV1I GCAGC 3 cut(s) 79, 420, 695
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 5 cut(s) 278, 324, 443, 449, 965
BtgI CCRYGG 3 cut(s) 273, 325, 534
BtsCI GGATG 4 cut(s) 274, 661, 907, 939
BtsIMutI CAGTG 2 cut(s) 525, 983
Cac8I GCNNGC 5 cut(s) 352, 365, 729, 838, 972
CfoI GCGC 3 cut(s) 485, 533, 976
Cfr13I GGNCC 3 cut(s) 442, 525, 944
Csp6I GTAC 2 cut(s) 417, 769
CviAII CATG 1 cut(s) 1042
CviQI GTAC 2 cut(s) 417, 769
DdeI CTNAG 1 cut(s) 381
DinI GGCGCC 1 cut(s) 484
DpnI GATC 2 cut(s) 245, 545
DpnII GATC 2 cut(s) 243, 543
DrdI GACNNNNNNGTC 1 cut(s) 739
DseDI GACNNNNNNGTC 1 cut(s) 739
EaeI YGGCCR 2 cut(s) 276, 322
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 396, 1032
Eco31I GGTCTC 2 cut(s) 346, 744
Eco32I GATATC 2 cut(s) 237, 777
Eco47I GGWCC 2 cut(s) 525, 944
Eco53kI GAGCTC 1 cut(s) 1030
Eco72I CACGTG 2 cut(s) 590, 632
Eco88I CYCGRG 1 cut(s) 990
Eco91I GGTNACC 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 1030
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 395, 444
EcoRV GATATC 2 cut(s) 237, 777
EcoT38I GRGCYC 2 cut(s) 396, 1032
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 1045
FaiI YATR 6 cut(s) 56, 170, 548, 620, 1019, 1043
FaqI GGGAC 2 cut(s) 160, 866
FatI CATG 1 cut(s) 1041
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 2 cut(s) 315, 429
FokI GGATG 4 cut(s) 281, 668, 914, 946
FriOI GRGCYC 2 cut(s) 396, 1032
GlaI GCGC 3 cut(s) 484, 532, 975
GsaI CCCAGC 1 cut(s) 722
HaeII RGCGCY 2 cut(s) 486, 534
HaeIII GGCC 5 cut(s) 278, 324, 443, 449, 965
HapII CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
HhaI GCGC 3 cut(s) 485, 533, 976
Hin1I GRCGYC 3 cut(s) 483, 734, 855
Hin1II CATG 1 cut(s) 1045
Hin6I GCGC 3 cut(s) 483, 531, 974
HinP1I GCGC 3 cut(s) 483, 531, 974
HincII GTYRAC 2 cut(s) 430, 514
HindII GTYRAC 2 cut(s) 430, 514
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 4 cut(s) 13, 24, 119, 221
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
HphI GGTGA 8 cut(s) 148, 253, 271, 274, 451, 802, 841, 1003
Hpy166II GTNNAC 3 cut(s) 316, 430, 514
Hpy188I TCNGA 4 cut(s) 142, 749, 781, 928
Hpy188III TCNNGA 3 cut(s) 383, 653, 1033
Hpy8I GTNNAC 3 cut(s) 316, 430, 514
Hpy99I CGWCG 8 cut(s) 47, 296, 323, 611, 736, 739, 845, 860
HpyAV CCTTC 3 cut(s) 259, 433, 655
HpyCH4III ACNGT 4 cut(s) 416, 520, 650, 1015
HpyCH4IV ACGT 6 cut(s) 403, 589, 631, 734, 771, 855
HpyCH4V TGCA 2 cut(s) 367, 905
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 6 cut(s) 403, 589, 631, 734, 771, 855
Hsp92I GRCGYC 3 cut(s) 483, 734, 855
Hsp92II CATG 1 cut(s) 1045
HspAI GCGC 3 cut(s) 483, 531, 974
KasI GGCGCC 1 cut(s) 482
Kpn2I TCCGGA 1 cut(s) 652
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 243, 543
LmnI GCTCC 6 cut(s) 72, 215, 338, 378, 781, 996
Lsp1109I GCAGC 3 cut(s) 79, 420, 695
LweI GCATC 3 cut(s) 162, 259, 892
MaeII ACGT 6 cut(s) 403, 589, 631, 734, 771, 855
MaeIII GTNAC 5 cut(s) 280, 627, 632, 790, 886
MalI GATC 2 cut(s) 245, 545
MbiI CCGCTC 1 cut(s) 939
MboI GATC 2 cut(s) 243, 543
MboII GAAGA 3 cut(s) 194, 197, 298
MhlI GDGCHC 3 cut(s) 300, 396, 1032
MluCI AATT 1 cut(s) 909
Mly113I GGCGCC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 120, 369
MroI TCCGGA 1 cut(s) 652
MseI TTAA 2 cut(s) 513, 912
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 8 cut(s) 82, 114, 129, 420, 579, 653, 785, 947
MspR9I CCNGG 3 cut(s) 115, 397, 446
MvaI CCWGG 2 cut(s) 397, 446
MvnI CGCG 3 cut(s) 357, 606, 739
NarI GGCGCC 1 cut(s) 483
NciI CCSGG 1 cut(s) 115
NdeII GATC 2 cut(s) 243, 543
NlaIII CATG 1 cut(s) 1045
NlaIV GGNNCC 4 cut(s) 334, 484, 526, 783
NmuCI GTSAC 5 cut(s) 280, 627, 632, 790, 886
PaeR7I CTCGAG 1 cut(s) 990
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 354
PfeI GAWTC 4 cut(s) 13, 24, 119, 221
Pfl23II CGTACG 1 cut(s) 768
PflFI GACNNNGTC 1 cut(s) 811
PluTI GGCGCC 1 cut(s) 486
PmaCI CACGTG 2 cut(s) 590, 632
PmlI CACGTG 2 cut(s) 590, 632
Ppu21I YACGTR 4 cut(s) 404, 590, 632, 772
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 2 cut(s) 395, 444
PspCI CACGTG 2 cut(s) 590, 632
PspEI GGTNACC 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 395, 444
PspLI CGTACG 1 cut(s) 768
PspN4I GGNNCC 4 cut(s) 334, 484, 526, 783
PspPI GGNCC 3 cut(s) 442, 525, 944
PspXI VCTCGAGB 1 cut(s) 990
PsyI GACNNNGTC 1 cut(s) 811
RsaI GTAC 2 cut(s) 418, 770
RsaNI GTAC 2 cut(s) 417, 769
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 1032
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 513, 912
Sau3AI GATC 2 cut(s) 243, 543
Sau96I GGNCC 3 cut(s) 442, 525, 944
ScrFI CCNGG 3 cut(s) 115, 397, 446
SduI GDGCHC 3 cut(s) 300, 396, 1032
SfaNI GCATC 3 cut(s) 162, 259, 892
SfoI GGCGCC 1 cut(s) 484
Sfr274I CTCGAG 1 cut(s) 990
SinI GGWCC 2 cut(s) 525, 944
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 990, 1031
SmoI CTYRAG 2 cut(s) 990, 1031
Sse9I AATT 1 cut(s) 909
SspDI GGCGCC 1 cut(s) 482
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 3 cut(s) 113, 395, 444
TaaI ACNGT 4 cut(s) 416, 520, 650, 1015
TaiI ACGT 6 cut(s) 406, 592, 634, 737, 774, 858
TaqI TCGA 8 cut(s) 27, 42, 233, 291, 390, 429, 863, 991
TaqII GACCGA 1 cut(s) 328
TasI AATT 1 cut(s) 909
TfiI GAWTC 4 cut(s) 13, 24, 119, 221
Tru1I TTAA 2 cut(s) 513, 912
Tru9I TTAA 2 cut(s) 513, 912
TscAI CASTG 2 cut(s) 525, 990
TseFI GTSAC 5 cut(s) 280, 627, 632, 790, 886
TseI GCWGC 3 cut(s) 67, 408, 708
Tsp45I GTSAC 5 cut(s) 280, 627, 632, 790, 886
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 95, 858
TspRI CASTG 2 cut(s) 525, 990
Tth111I GACNNNGTC 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 525, 944
XagI CCTNNNNNAGG 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 990
XmiI GTMKAC 2 cut(s) 315, 429
ZraI GACGTC 2 cut(s) 735, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.