Rroxscaffold_3G00260840

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
55174306 .. 55175364
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260840.1

Sequence Viewer

Length: 1059 bp
ATGGAGAGCTTGAATCCACAGGGAATCGAGCCTCCAAGCTTCGACGAGTGCCACATAAACAAGAGGCAGGGGCAGCGGCGCATTGACCGGAGTGCCGCTATTTCCAAGTTCCGTCAAACCGGGGAGTCCTCCTCCGGTCAATGGTCTGAGGAGACGGGCATCACCACCGAGATTATGATGTCCCAAGAAGAAGAGGATAAAGATGTGAGTAAAAGCTCCCCGTGCGAATCCTACGGCTCGATATCGGTGATCGGGCGGCGGAGGGTGATGCAGGACGCCATGGCCGTCACCAAGCTAGACGAGCACCACTTCTTCGCCGTCTACGACGGCCACGGTGGTTCCTCGGTCTCCAACGCCTGCCGCGACCTCCTGCACCAGCTCCTCGCTCAGGAGGTCGAGCACTGTATACACGGCAGCGACAGTACAGGAGGGGTCGACTGGGAGAAGGCCCTGGCCTCCTGCTTCACCAAGATGGATAACGAGGTCGGCGCAGCCGCCGCCGAGATGGAGGGCTGTGTGAACACAGTGGGGTCCAGCGCCGTGGTGGCGATCATAGGAAAGGAGGAAATAGTGGTGGCGAACTCCGGCAACTCACGTGCTGTTCTGTGCCGCGACGGCGTTGCTATACCTCTGTCACGTGACCACATCCCCGACCGTCCGGACGAGAAGGAGAGAGTGGAGGCGGCGGGAGGGAGAGTGATAGACTGGAAAGGCTGCCGCGTGCTGGGAGTGCTGGCGACGTCGCGGTCAATCGGAGACCATTACCTGAAGCCGTACGTGATATCGGAGCCGGAGGTGACCATCAGTAAGAGGACAGGGTCGTGCGACTTTCTGGTGATAGCGAGCGACGGACTTTGGGATGTCGTGTCGAATGAGTTTGCGTGTCAGGTTGTGACGAGATGTTTGGATGCACAAATTAAGTTGAAGTTTTCGGAGGGGATGAGCGGAGGTCCGGCGGCAAATGCGGCTGCCTTGCTGGCGCAACTGGCACTGGCTCGAGGGAGCAAAGATAATATCACCGTCATAGTAGTTGAGCTCAACAAGTCCACGACCGCCTGA

Protein Analysis

352

Amino Acids

37.83

Weight (kDa)

5.16

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 85 - 339 2.6e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017300)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04500
malus_domestica MD06G1106000.v1.1
prunus_persica Prupe.5G118100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194961
rosa_laevigata RLG00000004155
rosa_multiflora Rmu_ssc0000157.1_g000001
rosa_roxburghii Rroxscaffold_3G00260840
rosa_rugosa Rorug07G0019500
rosa_samantha Rh7AG147300 Rh7BG147900 Rh7CG151500 Rh7DG148400
rosa_wichuraiana Rw7G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 745
AatII GACGTC 1 cut(s) 743
AccBSI CCGCTC 1 cut(s) 945
AccI GTMKAC 3 cut(s) 321, 406, 435
AccII CGCG 4 cut(s) 363, 612, 720, 745
AccIII TCCGGA 1 cut(s) 658
AcoI YGGCCR 2 cut(s) 282, 328
AcuI CTGAAG 1 cut(s) 788
AcvI CACGTG 2 cut(s) 596, 638
AcyI GRCGYC 2 cut(s) 276, 740
AfaI GTAC 2 cut(s) 424, 776
AfiI CCNNNNNNNGG 3 cut(s) 141, 388, 724
AgsI TTSAA 2 cut(s) 13, 925
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 6 cut(s) 9, 39, 216, 295, 379, 1036
AluI AGCT 6 cut(s) 9, 39, 216, 295, 379, 1036
Alw21I GWGCWC 3 cut(s) 306, 402, 1038
Alw26I GTCTC 3 cut(s) 146, 352, 750
Ama87I CYCGRG 1 cut(s) 996
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 4 cut(s) 282, 328, 447, 453
ApeKI GCWGC 5 cut(s) 73, 414, 491, 714, 968
ArsI GACNNNNNNTTYG 2 cut(s) 886, 918
AspLEI GCGC 4 cut(s) 81, 491, 539, 982
AspS9I GGNCC 3 cut(s) 448, 531, 950
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 8 cut(s) 154, 259, 277, 280, 457, 808, 847, 1009
AvaI CYCGRG 1 cut(s) 996
AvaII GGWCC 2 cut(s) 531, 950
BanII GRGCYC 1 cut(s) 1038
BbrPI CACGTG 2 cut(s) 596, 638
Bbv12I GWGCWC 3 cut(s) 306, 402, 1038
BbvI GCAGC 5 cut(s) 85, 426, 503, 701, 955
BccI CCATC 3 cut(s) 466, 499, 809
BceAI ACGGC 8 cut(s) 250, 269, 302, 343, 427, 524, 631, 757
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 146, 352, 750
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 540
BglI GCCNNNNNGGC 3 cut(s) 545, 615, 977
Bme1390I CCNGG 2 cut(s) 121, 452
Bme18I GGWCC 2 cut(s) 531, 950
BmeT110I CYCGRG 1 cut(s) 996
BmgT120I GGNCC 3 cut(s) 448, 531, 950
BmiI GGNNCC 3 cut(s) 340, 532, 789
BmrFI CCNGG 2 cut(s) 121, 452
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 168, 258, 898
BmuI ACTGGG 1 cut(s) 448
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu10I CCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 121
BsaAI YACGTR 3 cut(s) 596, 638, 778
BsaHI GRCGYC 2 cut(s) 276, 740
BsaI GGTCTC 2 cut(s) 352, 750
BsaJI CCNNGG 6 cut(s) 120, 279, 331, 342, 450, 540
BsaWI WCCGGW 3 cut(s) 87, 134, 658
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 388, 724
Bse1I ACTGG 4 cut(s) 443, 710, 990, 996
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 6 cut(s) 120, 279, 331, 342, 450, 540
BseGI GGATG 4 cut(s) 645, 865, 913, 945
BseLI CCNNNNNNNGG 3 cut(s) 141, 388, 724
BseMII CTCAG 2 cut(s) 138, 401
BseNI ACTGG 4 cut(s) 443, 710, 990, 996
BseRI GAGGAG 3 cut(s) 121, 164, 371
BseXI GCAGC 5 cut(s) 85, 426, 503, 701, 955
BseYI CCCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 4 cut(s) 363, 612, 720, 745
Bsh1285I CGRYCG 2 cut(s) 655, 1053
BshFI GGCC 4 cut(s) 284, 330, 449, 455
BsiEI CGRYCG 2 cut(s) 655, 1053
BsiHKAI GWGCWC 3 cut(s) 306, 402, 1038
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 7 cut(s) 88, 120, 135, 585, 659, 791, 953
BsiWI CGTACG 1 cut(s) 774
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 141, 388, 724
BsmAI GTCTC 3 cut(s) 146, 352, 750
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 4 cut(s) 284, 330, 449, 455
Bso31I GGTCTC 2 cut(s) 352, 750
BsoBI CYCGRG 1 cut(s) 996
Bsp1286I GDGCHC 3 cut(s) 306, 402, 1038
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 2 cut(s) 249, 549
Bsp19I CCATGG 1 cut(s) 279
BspANI GGCC 4 cut(s) 284, 330, 449, 455
BspCNI CTCAG 2 cut(s) 139, 400
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 4 cut(s) 363, 612, 720, 745
BspLI GGNNCC 3 cut(s) 340, 532, 789
BspTNI GGTCTC 2 cut(s) 352, 750
BsrBI CCGCTC 1 cut(s) 945
BsrI ACTGG 4 cut(s) 443, 710, 990, 996
BssECI CCNNGG 6 cut(s) 120, 279, 331, 342, 450, 540
BssMI GATC 2 cut(s) 249, 549
BssNAI GTATAC 1 cut(s) 407
BssNI GRCGYC 2 cut(s) 276, 740
BssT1I CCWWGG 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 6 cut(s) 335, 404, 422, 526, 656, 1021
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 2 cut(s) 276, 740
BstBAI YACGTR 3 cut(s) 596, 638, 778
BstC8I GCNNGC 5 cut(s) 358, 722, 735, 844, 978
BstDEI CTNAG 2 cut(s) 147, 387
BstDSI CCRYGG 3 cut(s) 279, 331, 540
BstEII GGTNACC 1 cut(s) 796
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 4 cut(s) 645, 865, 913, 945
BstFNI CGCG 4 cut(s) 363, 612, 720, 745
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 4 cut(s) 81, 491, 539, 982
BstKTI GATC 2 cut(s) 252, 552
BstMAI GTCTC 3 cut(s) 146, 352, 750
BstMBI GATC 2 cut(s) 249, 549
BstMCI CGRYCG 2 cut(s) 655, 1053
BstNI CCWGG 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 119, 450
BstUI CGCG 4 cut(s) 363, 612, 720, 745
BstV1I GCAGC 5 cut(s) 85, 426, 503, 701, 955
BstXI CCANNNNNNTGG 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 407
BsuRI GGCC 4 cut(s) 284, 330, 449, 455
BtgI CCRYGG 3 cut(s) 279, 331, 540
BtsCI GGATG 4 cut(s) 645, 865, 913, 945
BtsIMutI CAGTG 3 cut(s) 400, 531, 989
Cac8I GCNNGC 5 cut(s) 358, 722, 735, 844, 978
CfoI GCGC 4 cut(s) 81, 491, 539, 982
Cfr13I GGNCC 3 cut(s) 448, 531, 950
CseI GACGC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 423, 775
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 423, 775
DdeI CTNAG 2 cut(s) 147, 387
DpnI GATC 2 cut(s) 251, 551
DpnII GATC 2 cut(s) 249, 549
DrdI GACNNNNNNGTC 1 cut(s) 745
DseDI GACNNNNNNGTC 1 cut(s) 745
EaeI YGGCCR 2 cut(s) 282, 328
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 1036
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 1038
Eco31I GGTCTC 2 cut(s) 352, 750
Eco32I GATATC 2 cut(s) 243, 783
Eco47I GGWCC 2 cut(s) 531, 950
Eco53kI GAGCTC 1 cut(s) 1036
Eco57I CTGAAG 1 cut(s) 788
Eco72I CACGTG 2 cut(s) 596, 638
Eco88I CYCGRG 1 cut(s) 996
Eco91I GGTNACC 1 cut(s) 796
EcoICRI GAGCTC 1 cut(s) 1036
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 2 cut(s) 243, 783
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 1038
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 1 cut(s) 283
FaiI YATR 7 cut(s) 56, 176, 281, 407, 554, 626, 1025
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 3 cut(s) 321, 406, 435
FokI GGATG 4 cut(s) 632, 872, 920, 952
FriOI GRGCYC 1 cut(s) 1038
FspBI CTAG 1 cut(s) 296
GlaI GCGC 4 cut(s) 80, 490, 538, 981
GsaI CCCAGC 1 cut(s) 728
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 4 cut(s) 284, 330, 449, 455
HapII CCGG 7 cut(s) 88, 120, 135, 585, 659, 791, 953
HgaI GACGC 1 cut(s) 284
HhaI GCGC 4 cut(s) 81, 491, 539, 982
Hin1I GRCGYC 2 cut(s) 276, 740
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 4 cut(s) 79, 489, 537, 980
HinP1I GCGC 4 cut(s) 79, 489, 537, 980
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 4 cut(s) 13, 24, 125, 227
HpaII CCGG 7 cut(s) 88, 120, 135, 585, 659, 791, 953
HphI GGTGA 8 cut(s) 154, 259, 277, 280, 457, 808, 847, 1009
Hpy166II GTNNAC 5 cut(s) 322, 407, 436, 520, 1047
Hpy188I TCNGA 4 cut(s) 148, 755, 787, 934
Hpy188III TCNNGA 2 cut(s) 389, 659
Hpy8I GTNNAC 5 cut(s) 322, 407, 436, 520, 1047
Hpy99I CGWCG 6 cut(s) 47, 329, 617, 742, 745, 851
HpyAV CCTTC 2 cut(s) 439, 661
HpyCH4III ACNGT 6 cut(s) 335, 404, 422, 526, 656, 1021
HpyCH4IV ACGT 4 cut(s) 595, 637, 740, 777
HpyCH4V TGCA 3 cut(s) 271, 373, 911
HpyF3I CTNAG 2 cut(s) 147, 387
HpySE526I ACGT 4 cut(s) 595, 637, 740, 777
Hsp92I GRCGYC 2 cut(s) 276, 740
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 4 cut(s) 79, 489, 537, 980
Kpn2I TCCGGA 1 cut(s) 658
Kzo9I GATC 2 cut(s) 249, 549
LmnI GCTCC 4 cut(s) 221, 384, 787, 1002
Lsp1109I GCAGC 5 cut(s) 85, 426, 503, 701, 955
LweI GCATC 3 cut(s) 168, 258, 898
MaeI CTAG 1 cut(s) 296
MaeII ACGT 4 cut(s) 595, 637, 740, 777
MaeIII GTNAC 5 cut(s) 286, 633, 638, 796, 892
MalI GATC 2 cut(s) 251, 551
MbiI CCGCTC 1 cut(s) 945
MboI GATC 2 cut(s) 249, 549
MboII GAAGA 3 cut(s) 200, 203, 304
MhlI GDGCHC 3 cut(s) 306, 402, 1038
MluCI AATT 1 cut(s) 915
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 375
MroI TCCGGA 1 cut(s) 658
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 7 cut(s) 88, 120, 135, 585, 659, 791, 953
MspR9I CCNGG 2 cut(s) 121, 452
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 4 cut(s) 363, 612, 720, 745
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 279
NdeII GATC 2 cut(s) 249, 549
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 3 cut(s) 340, 532, 789
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 5 cut(s) 286, 633, 638, 796, 892
PaeR7I CTCGAG 1 cut(s) 996
PcsI WCGNNNNNNNCGW 3 cut(s) 282, 321, 360
PfeI GAWTC 3 cut(s) 13, 24, 227
Pfl23II CGTACG 1 cut(s) 774
PflFI GACNNNGTC 1 cut(s) 817
PleI GAGTC 1 cut(s) 133
PmaCI CACGTG 2 cut(s) 596, 638
PmlI CACGTG 2 cut(s) 596, 638
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 3 cut(s) 596, 638, 778
Psp124BI GAGCTC 1 cut(s) 1038
Psp6I CCWGG 1 cut(s) 450
PspCI CACGTG 2 cut(s) 596, 638
PspEI GGTNACC 1 cut(s) 796
PspFI CCCAGC 1 cut(s) 724
PspGI CCWGG 1 cut(s) 450
PspLI CGTACG 1 cut(s) 774
PspN4I GGNNCC 3 cut(s) 340, 532, 789
PspPI GGNCC 3 cut(s) 448, 531, 950
PspXI VCTCGAGB 1 cut(s) 996
PsyI GACNNNGTC 1 cut(s) 817
RsaI GTAC 2 cut(s) 424, 776
RsaNI GTAC 2 cut(s) 423, 775
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 1038
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 918
Sau3AI GATC 2 cut(s) 249, 549
Sau96I GGNCC 3 cut(s) 448, 531, 950
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 121, 452
SduI GDGCHC 3 cut(s) 306, 402, 1038
SfaNI GCATC 3 cut(s) 168, 258, 898
Sfr274I CTCGAG 1 cut(s) 996
SinI GGWCC 2 cut(s) 531, 950
SlaI CTCGAG 1 cut(s) 996
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 996
SmoI CTYRAG 1 cut(s) 996
Sse9I AATT 1 cut(s) 915
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 1038
StyD4I CCNGG 2 cut(s) 119, 450
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 6 cut(s) 335, 404, 422, 526, 656, 1021
TaiI ACGT 4 cut(s) 598, 640, 743, 780
TaqI TCGA 7 cut(s) 27, 42, 239, 396, 435, 869, 997
TaqII GACCGA 1 cut(s) 334
TasI AATT 1 cut(s) 915
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 3 cut(s) 13, 24, 227
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 3 cut(s) 407, 531, 996
TseFI GTSAC 5 cut(s) 286, 633, 638, 796, 892
TseI GCWGC 5 cut(s) 73, 414, 491, 714, 968
Tsp45I GTSAC 5 cut(s) 286, 633, 638, 796, 892
TspGWI ACGGA 2 cut(s) 101, 864
TspRI CASTG 3 cut(s) 407, 531, 996
Tth111I GACNNNGTC 1 cut(s) 817
VpaK11BI GGWCC 2 cut(s) 531, 950
XagI CCTNNNNNAGG 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XhoI CTCGAG 1 cut(s) 996
XmiI GTMKAC 3 cut(s) 321, 406, 435
XspI CTAG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.