RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65200 |
| fragaria_vesca | FvH4_5g16420 |
| malus_domestica | MD06G1180900.v1.1 MD14G1186000.v1.1 |
| prunus_persica | Prupe.5G178900_v2.0.a1 |
| pyrus_communis | pycom06g16000 pycom14g15480 |
| rosa_chinensis | RchiOBHm_Chr7g0179681 |
| rosa_laevigata | RLG00000005331 |
| rosa_multiflora | Rmu_sc0005329.1_g000033 |
| rosa_roxburghii | Rroxscaffold_155G00443810 Rroxscaffold_3G00273550 |
| rosa_rugosa | Rorug06G0427300 |
| rosa_samantha | Rh7BG025900 Rh7DG027500 |
| rosa_wichuraiana | Rw7G002150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 119 |
| Acc16I | TGCGCA | 1 cut(s) | 1049 |
| AccB1I | GGYRCC | 1 cut(s) | 267 |
| AccBSI | CCGCTC | 2 cut(s) | 45, 1015 |
| AccI | GTMKAC | 2 cut(s) | 459, 1301 |
| AclWI | GGATC | 4 cut(s) | 781, 909, 922, 1129 |
| AcoI | YGGCCR | 2 cut(s) | 240, 765 |
| AcuI | CTGAAG | 2 cut(s) | 671, 937 |
| AcyI | GRCGYC | 1 cut(s) | 1169 |
| AfaI | GTAC | 3 cut(s) | 334, 870, 996 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 60, 95, 96, 892, 1063, 1366 |
| AgsI | TTSAA | 3 cut(s) | 197, 234, 907 |
| AhlI | ACTAGT | 1 cut(s) | 1114 |
| AjnI | CCWGG | 2 cut(s) | 59, 1089 |
| AluBI | AGCT | 9 cut(s) | 57, 79, 193, 477, 655, 663, 730, 957, 1212 |
| AluI | AGCT | 9 cut(s) | 57, 79, 193, 477, 655, 663, 730, 957, 1212 |
| Alw21I | GWGCWC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| Alw26I | GTCTC | 4 cut(s) | 130, 210, 621, 1167 |
| Alw44I | GTGCAC | 1 cut(s) | 745 |
| AlwI | GGATC | 4 cut(s) | 781, 909, 922, 1129 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1514 |
| AoxI | GGCC | 5 cut(s) | 240, 410, 448, 765, 1528 |
| ApaLI | GTGCAC | 1 cut(s) | 745 |
| ApeKI | GCWGC | 5 cut(s) | 64, 805, 938, 1006, 1212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 477, 509 |
| AspS9I | GGNCC | 4 cut(s) | 99, 448, 1227, 1529 |
| AsuC2I | CCSGG | 3 cut(s) | 97, 116, 621 |
| AsuHPI | GGTGA | 2 cut(s) | 871, 1471 |
| AvaII | GGWCC | 2 cut(s) | 99, 1227 |
| BaeGI | GKGCMC | 1 cut(s) | 749 |
| BalI | TGGCCA | 1 cut(s) | 242 |
| BamHI | GGATCC | 1 cut(s) | 914 |
| BanI | GGYRCC | 1 cut(s) | 267 |
| BanII | GRGCYC | 3 cut(s) | 81, 479, 732 |
| BauI | CACGAG | 2 cut(s) | 547, 712 |
| BbsI | GAAGAC | 3 cut(s) | 204, 363, 555 |
| Bbv12I | GWGCWC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| BbvCI | CCTCAGC | 1 cut(s) | 1274 |
| BbvI | GCAGC | 5 cut(s) | 51, 817, 950, 993, 1199 |
| BccI | CCATC | 3 cut(s) | 251, 263, 976 |
| BceAI | ACGGC | 2 cut(s) | 752, 1164 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 804, 838 |
| BciT130I | CCWGG | 2 cut(s) | 61, 1091 |
| BcnI | CCSGG | 3 cut(s) | 97, 116, 621 |
| BcoDI | GTCTC | 4 cut(s) | 130, 210, 621, 1167 |
| BcuI | ACTAGT | 1 cut(s) | 1114 |
| BfaI | CTAG | 3 cut(s) | 1115, 1205, 1305 |
| BfoI | RGCGCY | 6 cut(s) | 151, 302, 965, 1076, 1328, 1515 |
| BglII | AGATCT | 1 cut(s) | 30 |
| Bme1390I | CCNGG | 5 cut(s) | 61, 97, 116, 621, 1091 |
| Bme18I | GGWCC | 2 cut(s) | 99, 1227 |
| BmgT120I | GGNCC | 4 cut(s) | 99, 448, 1227, 1529 |
| BmiI | GGNNCC | 4 cut(s) | 100, 269, 916, 1358 |
| BmrFI | CCNGG | 5 cut(s) | 61, 97, 116, 621, 1091 |
| BmsI | GCATC | 5 cut(s) | 614, 636, 1231, 1260, 1341 |
| BpiI | GAAGAC | 3 cut(s) | 204, 363, 555 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 137, 169, 1509, 1541 |
| BpmI | CTGGAG | 4 cut(s) | 37, 43, 863, 1536 |
| Bpu10I | CCTNAGC | 3 cut(s) | 731, 1153, 1274 |
| BpuMI | CCSGG | 3 cut(s) | 97, 116, 621 |
| BsaBI | GATNNNNATC | 1 cut(s) | 986 |
| BsaHI | GRCGYC | 1 cut(s) | 1169 |
| BsaI | GGTCTC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 8 cut(s) | 315, 361, 504, 585, 666, 752, 1089, 1360 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 41, 71 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 60, 95, 96, 892, 1063, 1366 |
| Bse118I | RCCGGY | 1 cut(s) | 941 |
| Bse1I | ACTGG | 3 cut(s) | 269, 846, 918 |
| Bse8I | GATNNNNATC | 1 cut(s) | 986 |
| BseBI | CCWGG | 2 cut(s) | 61, 1091 |
| BseDI | CCNNGG | 8 cut(s) | 315, 361, 504, 585, 666, 752, 1089, 1360 |
| BseGI | GGATG | 4 cut(s) | 255, 498, 629, 1275 |
| BseJI | GATNNNNATC | 1 cut(s) | 986 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 60, 95, 96, 892, 1063, 1366 |
| BseMII | CTCAG | 5 cut(s) | 647, 715, 745, 1265, 1328 |
| BseNI | ACTGG | 3 cut(s) | 269, 846, 918 |
| BsePI | GCGCGC | 1 cut(s) | 945 |
| BseRI | GAGGAG | 6 cut(s) | 71, 513, 698, 740, 1291, 1294 |
| BseSI | GKGCMC | 1 cut(s) | 749 |
| BseX3I | CGGCCG | 1 cut(s) | 765 |
| BseXI | GCAGC | 5 cut(s) | 51, 817, 950, 993, 1199 |
| BsgI | GTGCAG | 1 cut(s) | 824 |
| Bsh1285I | CGRYCG | 4 cut(s) | 120, 441, 495, 768 |
| BshFI | GGCC | 5 cut(s) | 242, 412, 450, 767, 1530 |
| BshNI | GGYRCC | 1 cut(s) | 267 |
| BsiEI | CGRYCG | 4 cut(s) | 120, 441, 495, 768 |
| BsiHKAI | GWGCWC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| BsiSI | CCGG | 6 cut(s) | 96, 116, 302, 620, 942, 1166 |
| BsiWI | CGTACG | 2 cut(s) | 332, 868 |
| BslFI | GGGAC | 3 cut(s) | 528, 869, 1505 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 60, 95, 96, 892, 1063, 1366 |
| BsmAI | GTCTC | 4 cut(s) | 130, 210, 621, 1167 |
| BsmBI | CGTCTC | 2 cut(s) | 130, 621 |
| BsmFI | GGGAC | 3 cut(s) | 528, 869, 1505 |
| BsnI | GGCC | 5 cut(s) | 242, 412, 450, 767, 1530 |
| Bso31I | GGTCTC | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| Bsp143I | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| Bsp68I | TCGCGA | 2 cut(s) | 536, 790 |
| BspANI | GGCC | 5 cut(s) | 242, 412, 450, 767, 1530 |
| BspCNI | CTCAG | 5 cut(s) | 648, 714, 744, 1266, 1329 |
| BspLI | GGNNCC | 4 cut(s) | 100, 269, 916, 1358 |
| BspPI | GGATC | 4 cut(s) | 781, 909, 922, 1129 |
| BspQI | GCTCTTC | 1 cut(s) | 956 |
| BspT107I | GGYRCC | 1 cut(s) | 267 |
| BspTNI | GGTCTC | 1 cut(s) | 210 |
| BsrBI | CCGCTC | 2 cut(s) | 45, 1015 |
| BsrFI | RCCGGY | 1 cut(s) | 941 |
| BsrI | ACTGG | 3 cut(s) | 269, 846, 918 |
| BssAI | RCCGGY | 1 cut(s) | 941 |
| BssECI | CCNNGG | 8 cut(s) | 315, 361, 504, 585, 666, 752, 1089, 1360 |
| BssHII | GCGCGC | 1 cut(s) | 945 |
| BssMI | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| BssNI | GRCGYC | 1 cut(s) | 1169 |
| BssSI | CACGAG | 2 cut(s) | 547, 712 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| Bst2BI | CACGAG | 2 cut(s) | 547, 712 |
| Bst2UI | CCWGG | 2 cut(s) | 61, 1091 |
| Bst4CI | ACNGT | 5 cut(s) | 328, 802, 873, 1316, 1459 |
| Bst6I | CTCTTC | 4 cut(s) | 133, 627, 956, 1439 |
| BstACI | GRCGYC | 1 cut(s) | 1169 |
| BstDEI | CTNAG | 6 cut(s) | 656, 701, 731, 1153, 1274, 1337 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstF5I | GGATG | 4 cut(s) | 255, 498, 629, 1275 |
| BstH2I | RGCGCY | 6 cut(s) | 151, 302, 965, 1076, 1328, 1515 |
| BstKTI | GATC | 5 cut(s) | 33, 776, 867, 917, 1137 |
| BstMAI | GTCTC | 4 cut(s) | 130, 210, 621, 1167 |
| BstMBI | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| BstMCI | CGRYCG | 4 cut(s) | 120, 441, 495, 768 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 12, 177, 944, 1012, 1331, 1333, 1376 |
| BstNI | CCWGG | 2 cut(s) | 61, 1091 |
| BstSCI | CCNGG | 5 cut(s) | 59, 95, 114, 619, 1089 |
| BstSLI | GKGCMC | 1 cut(s) | 749 |
| BstV1I | GCAGC | 5 cut(s) | 51, 817, 950, 993, 1199 |
| BstV2I | GAAGAC | 3 cut(s) | 204, 363, 555 |
| BstX2I | RGATCY | 2 cut(s) | 30, 914 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1252 |
| BstYI | RGATCY | 2 cut(s) | 30, 914 |
| BstZI | CGGCCG | 1 cut(s) | 765 |
| BsuRI | GGCC | 5 cut(s) | 242, 412, 450, 767, 1530 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtgZI | GCGATG | 1 cut(s) | 565 |
| BtsCI | GGATG | 4 cut(s) | 255, 498, 629, 1275 |
| BtsIMutI | CAGTG | 3 cut(s) | 282, 839, 925 |
| BtuMI | TCGCGA | 2 cut(s) | 536, 790 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1514 |
| Cfr10I | RCCGGY | 1 cut(s) | 941 |
| Cfr13I | GGNCC | 4 cut(s) | 99, 448, 1227, 1529 |
| CseI | GACGC | 1 cut(s) | 1158 |
| Csp6I | GTAC | 3 cut(s) | 333, 869, 995 |
| CviAII | CATG | 3 cut(s) | 226, 1018, 1234 |
| CviQI | GTAC | 3 cut(s) | 333, 869, 995 |
| DdeI | CTNAG | 6 cut(s) | 656, 701, 731, 1153, 1274, 1337 |
| DpnI | GATC | 5 cut(s) | 32, 775, 866, 916, 1136 |
| DpnII | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 119 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 119 |
| EaeI | YGGCCR | 2 cut(s) | 240, 765 |
| EagI | CGGCCG | 1 cut(s) | 765 |
| Eam1104I | CTCTTC | 4 cut(s) | 133, 627, 956, 1439 |
| EarI | CTCTTC | 4 cut(s) | 133, 627, 956, 1439 |
| EciI | GGCGGA | 4 cut(s) | 145, 927, 1052, 1219 |
| Ecl136II | GAGCTC | 3 cut(s) | 79, 477, 730 |
| EclXI | CGGCCG | 1 cut(s) | 765 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco24I | GRGCYC | 3 cut(s) | 81, 479, 732 |
| Eco31I | GGTCTC | 1 cut(s) | 210 |
| Eco32I | GATATC | 1 cut(s) | 577 |
| Eco47I | GGWCC | 2 cut(s) | 99, 1227 |
| Eco52I | CGGCCG | 1 cut(s) | 765 |
| Eco53kI | GAGCTC | 3 cut(s) | 79, 477, 730 |
| Eco57I | CTGAAG | 2 cut(s) | 671, 937 |
| EcoICRI | GAGCTC | 3 cut(s) | 79, 477, 730 |
| EcoO109I | RGGNCCY | 1 cut(s) | 99 |
| EcoRII | CCWGG | 2 cut(s) | 59, 1089 |
| EcoRV | GATATC | 1 cut(s) | 577 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| EcoT38I | GRGCYC | 3 cut(s) | 81, 479, 732 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| Esp3I | CGTCTC | 2 cut(s) | 130, 621 |
| FaeI | CATG | 3 cut(s) | 229, 1021, 1237 |
| FaiI | YATR | 5 cut(s) | 227, 422, 1019, 1235, 1569 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 20, 52 |
| FaqI | GGGAC | 3 cut(s) | 528, 869, 1505 |
| FatI | CATG | 3 cut(s) | 225, 1017, 1233 |
| FauI | CCCGC | 2 cut(s) | 300, 894 |
| FblI | GTMKAC | 2 cut(s) | 459, 1301 |
| FokI | GGATG | 4 cut(s) | 242, 485, 636, 1282 |
| FriOI | GRGCYC | 3 cut(s) | 81, 479, 732 |
| FspAI | RTGCGCAY | 1 cut(s) | 1049 |
| FspBI | CTAG | 3 cut(s) | 1115, 1205, 1305 |
| FspI | TGCGCA | 1 cut(s) | 1049 |
| GsuI | CTGGAG | 4 cut(s) | 37, 43, 863, 1536 |
| HaeII | RGCGCY | 6 cut(s) | 151, 302, 965, 1076, 1328, 1515 |
| HaeIII | GGCC | 5 cut(s) | 242, 412, 450, 767, 1530 |
| HapII | CCGG | 6 cut(s) | 96, 116, 302, 620, 942, 1166 |
| HgaI | GACGC | 1 cut(s) | 1158 |
| Hin1I | GRCGYC | 1 cut(s) | 1169 |
| Hin1II | CATG | 3 cut(s) | 229, 1021, 1237 |
| HincII | GTYRAC | 3 cut(s) | 460, 1302, 1455 |
| HindII | GTYRAC | 3 cut(s) | 460, 1302, 1455 |
| HindIII | AAGCTT | 1 cut(s) | 191 |
| HpaII | CCGG | 6 cut(s) | 96, 116, 302, 620, 942, 1166 |
| HphI | GGTGA | 2 cut(s) | 871, 1471 |
| Hpy166II | GTNNAC | 7 cut(s) | 252, 426, 460, 515, 747, 1302, 1455 |
| Hpy188III | TCNNGA | 6 cut(s) | 207, 259, 535, 712, 789, 876 |
| Hpy8I | GTNNAC | 7 cut(s) | 252, 426, 460, 515, 747, 1302, 1455 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 773, 1174 |
| HpyAV | CCTTC | 7 cut(s) | 46, 67, 151, 541, 715, 901, 1375 |
| HpyCH4III | ACNGT | 5 cut(s) | 328, 802, 873, 1316, 1459 |
| HpyCH4IV | ACGT | 2 cut(s) | 335, 1586 |
| HpyCH4V | TGCA | 6 cut(s) | 747, 805, 1021, 1200, 1215, 1567 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 12, 177, 944, 1012, 1331, 1333, 1376 |
| HpyF3I | CTNAG | 6 cut(s) | 656, 701, 731, 1153, 1274, 1337 |
| HpySE526I | ACGT | 2 cut(s) | 335, 1586 |
| Hsp92I | GRCGYC | 1 cut(s) | 1169 |
| Hsp92II | CATG | 3 cut(s) | 229, 1021, 1237 |
| KroI | GCCGGC | 1 cut(s) | 941 |
| KroNI | GCCGGC | 1 cut(s) | 943 |
| Kzo9I | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| LguI | GCTCTTC | 1 cut(s) | 956 |
| LmnI | GCTCC | 9 cut(s) | 50, 62, 76, 84, 668, 727, 931, 1281, 1419 |
| Lsp1109I | GCAGC | 5 cut(s) | 51, 817, 950, 993, 1199 |
| LweI | GCATC | 5 cut(s) | 614, 636, 1231, 1260, 1341 |
| MaeI | CTAG | 3 cut(s) | 1115, 1205, 1305 |
| MaeII | ACGT | 2 cut(s) | 335, 1586 |
| MaeIII | GTNAC | 3 cut(s) | 551, 837, 1340 |
| MalI | GATC | 5 cut(s) | 32, 775, 866, 916, 1136 |
| MbiI | CCGCTC | 2 cut(s) | 45, 1015 |
| MboI | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| MfeI | CAATTG | 1 cut(s) | 641 |
| MflI | RGATCY | 2 cut(s) | 30, 914 |
| MhlI | GDGCHC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| MlsI | TGGCCA | 1 cut(s) | 242 |
| MluCI | AATT | 7 cut(s) | 339, 607, 641, 693, 832, 1286, 1486 |
| MluNI | TGGCCA | 1 cut(s) | 242 |
| MmeI | TCCRAC | 3 cut(s) | 72, 751, 1501 |
| Mox20I | TGGCCA | 1 cut(s) | 242 |
| MroNI | GCCGGC | 1 cut(s) | 941 |
| MscI | TGGCCA | 1 cut(s) | 242 |
| MseI | TTAA | 1 cut(s) | 338 |
| Msp20I | TGGCCA | 1 cut(s) | 242 |
| MspI | CCGG | 6 cut(s) | 96, 116, 302, 620, 942, 1166 |
| MspR9I | CCNGG | 5 cut(s) | 61, 97, 116, 621, 1091 |
| MunI | CAATTG | 1 cut(s) | 641 |
| MvaI | CCWGG | 2 cut(s) | 61, 1091 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 12, 177, 944, 1012, 1331, 1333, 1376 |
| NaeI | GCCGGC | 1 cut(s) | 943 |
| NciI | CCSGG | 3 cut(s) | 97, 116, 621 |
| NdeII | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| NgoMIV | GCCGGC | 1 cut(s) | 941 |
| NlaIII | CATG | 3 cut(s) | 229, 1021, 1237 |
| NlaIV | GGNNCC | 4 cut(s) | 100, 269, 916, 1358 |
| NmeAIII | GCCGAG | 7 cut(s) | 479, 485, 610, 733, 743, 1043, 1506 |
| NmuCI | GTSAC | 2 cut(s) | 837, 1340 |
| NruI | TCGCGA | 2 cut(s) | 536, 790 |
| NsbI | TGCGCA | 1 cut(s) | 1049 |
| PauI | GCGCGC | 1 cut(s) | 945 |
| PciSI | GCTCTTC | 1 cut(s) | 956 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 438, 588 |
| PdiI | GCCGGC | 1 cut(s) | 943 |
| PfeI | GAWTC | 6 cut(s) | 488, 879, 923, 1192, 1292, 1505 |
| Pfl23II | CGTACG | 2 cut(s) | 332, 868 |
| PflFI | GACNNNGTC | 1 cut(s) | 116 |
| PfoI | TCCNGGA | 1 cut(s) | 619 |
| PpuMI | RGGWCCY | 1 cut(s) | 99 |
| Psp124BI | GAGCTC | 3 cut(s) | 81, 479, 732 |
| Psp5II | RGGWCCY | 1 cut(s) | 99 |
| Psp6I | CCWGG | 2 cut(s) | 59, 1089 |
| PspGI | CCWGG | 2 cut(s) | 59, 1089 |
| PspLI | CGTACG | 2 cut(s) | 332, 868 |
| PspN4I | GGNNCC | 4 cut(s) | 100, 269, 916, 1358 |
| PspPI | GGNCC | 4 cut(s) | 99, 448, 1227, 1529 |
| PspPPI | RGGWCCY | 1 cut(s) | 99 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1514 |
| PsuI | RGATCY | 2 cut(s) | 30, 914 |
| PsyI | GACNNNGTC | 1 cut(s) | 116 |
| PteI | GCGCGC | 1 cut(s) | 945 |
| RruI | TCGCGA | 2 cut(s) | 536, 790 |
| RsaI | GTAC | 3 cut(s) | 334, 870, 996 |
| RsaNI | GTAC | 3 cut(s) | 333, 869, 995 |
| SacI | GAGCTC | 3 cut(s) | 81, 479, 732 |
| SalI | GTCGAC | 2 cut(s) | 458, 1300 |
| SapI | GCTCTTC | 1 cut(s) | 956 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| Sau3AI | GATC | 5 cut(s) | 30, 773, 864, 914, 1134 |
| Sau96I | GGNCC | 4 cut(s) | 99, 448, 1227, 1529 |
| ScrFI | CCNGG | 5 cut(s) | 61, 97, 116, 621, 1091 |
| SduI | GDGCHC | 6 cut(s) | 81, 479, 732, 749, 936, 1503 |
| SfaNI | GCATC | 5 cut(s) | 614, 636, 1231, 1260, 1341 |
| SinI | GGWCC | 2 cut(s) | 99, 1227 |
| SpeI | ACTAGT | 1 cut(s) | 1114 |
| Sse9I | AATT | 7 cut(s) | 339, 607, 641, 693, 832, 1286, 1486 |
| SspMI | CTAG | 3 cut(s) | 1115, 1205, 1305 |
| SstI | GAGCTC | 3 cut(s) | 81, 479, 732 |
| StyD4I | CCNGG | 5 cut(s) | 59, 95, 114, 619, 1089 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaaI | ACNGT | 5 cut(s) | 328, 802, 873, 1316, 1459 |
| TaiI | ACGT | 2 cut(s) | 338, 1589 |
| TaqII | GACCGA | 2 cut(s) | 455, 481 |
| TasI | AATT | 7 cut(s) | 339, 607, 641, 693, 832, 1286, 1486 |
| TauI | GCSGC | 5 cut(s) | 171, 415, 437, 453, 1325 |
| TfiI | GAWTC | 6 cut(s) | 488, 879, 923, 1192, 1292, 1505 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TscAI | CASTG | 3 cut(s) | 289, 846, 925 |
| TseFI | GTSAC | 2 cut(s) | 837, 1340 |
| TseI | GCWGC | 5 cut(s) | 64, 805, 938, 1006, 1212 |
| Tsp45I | GTSAC | 2 cut(s) | 837, 1340 |
| TspGWI | ACGGA | 3 cut(s) | 304, 320, 411 |
| TspRI | CASTG | 3 cut(s) | 289, 846, 925 |
| Tth111I | GACNNNGTC | 1 cut(s) | 116 |
| VneI | GTGCAC | 1 cut(s) | 745 |
| VpaK11BI | GGWCC | 2 cut(s) | 99, 1227 |
| XmiI | GTMKAC | 2 cut(s) | 459, 1301 |
| XspI | CTAG | 3 cut(s) | 1115, 1205, 1305 |