Rroxscaffold_3G00273550

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015002
Physical Location & Seq
Forward (+)
65309543 .. 65311174
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273550.1

Sequence Viewer

Length: 1632 bp
ATGGGTGGTAATGGAAAGCACAGGTGGAAGATCTCCTTCTACCGCTCCACCTCCTCCGCAAAGCAGCCGCCCAAAGAGTTCATGTGTCCTATTTCCGGGTCTTTAATGTCCGACCCGGTCATCGTCGCCTCCGGCCAGACATTCGAGCGCCGCTCCGTCCAAGTCTGCCGCGAATTCGGCTACGCGCCCGAGCTCCCCGACGGGACCCGGCCCGATTTCTCCAACTTAATCCCTAACATGGCGATCAAGACCACCATCCTCAATTGGTGCGACCAACACCACTCCGACCGCCCCCAGCCGCCGGATTTGGCCTCCGTCGAGAAGAACGTCCGGGCCCTGATGGAGGAGAGCAGGGTCGATCAGGGAATTAGGGTTTCGGAGAGGGAATTGCTTAAAGGCGTGGCGGAGCGGCCGCCGATTATGTTCTCACACGCCGCCACCGAGCTCGGCCGCGGCCGCGTCGACCATTTCTACTCCAGCTCGTCGGAAGAGTCCGTCGTCATCGCCTCCCCAAGTCCTTACACTCCTCTTCCCTTCGCGACTCGGCCGTCGTGTTACTCCTCCTCGCCTTCATCCTCCGAAATTGTCGAACTCGAAACCCTAAATCCCAATTCGAATTCCAGTTCGATTAATTTAAGTGCGGAGGAGGAAGAATTGATGACGAAGCTCAGTAGCTCCGTCATAGTCGAGCAAGAAGAGGCGGTGATTTCACTGAGGAAGCTGACCAGGACGAAAGAGGAGCTCAGGGTTTCGCTCTGCACGCCGCGGCTGCTCTCGGCCCTCCGATCTCTGATCGTCTCGCGCTACAGCACCGTCCAAGTCAACGCCGCCGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCCGAACAAGGTGAAGATCGTGCGGTCGGGATTCGTCCCGCCGCTGGTCGACGTTTTGAAAAGCGGATCCGGCGAGTCGCAGGAGCACGCCGCCGGCGCGCTCTTCAGCCTGGCCTTGGAAGAAGACAACAAGATGGCGATCGGAGTCCTCGGCGCGTTGCCGCCGCTCATGCACGCGCTGGTAAGGTCGGAAAGTGAACGCACGCGCCACGACTCGGCTCTGGCGCTCTACCACCTGACGCTGGTGGAGAGCAACCGAATCAAACTCGTGAAGCTGAACGCTGTGCCGACGCTTCTGGCGCTGTCGAAGGCGCCCGGGTCGGCGGGTCGGGTTTTGTTGATACTGTGCAACCTGGCGATCTGCGGCGAGGGAAGGTCGGCGATGCTGGACGCGAACGCGGTAGAGTGCTTGGTGGGGATGCTGAGGAGGAACGAGCTGGACTCGGAGTCGACGCGCGAGAACTGCGTGGCGGCGCTGTACGCGCTGAGCCACGGGTCGATGAGGTTCCGGGGGCTGGCGAGGGAGGCGAAGGCGGTGGAGGTGTTGAGTGAGGTGGAGAAGAGAGGGAGCGAGAGGGCAAGGGAGAAGGCCAAGAGGCTGTTGATGATCATGAGAGGCGGCGGCGGAGGAGGAGGAGGGAGGGCGGAGGATGGTGAGCCGGATTGGGAGGGGGCTTTGGATTCGGGTACTGGAGTTGGGCTCGGCGCGGGAACCCGGTACCGAGTTGGGCCGGGTAGGAGCTTGCATGCTGCCAACTCAACTACCTTTTAG

Protein Analysis

543

Amino Acids

58.72

Weight (kDa)

8.03

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 24 - 94 3.2e-10 U-box domain
ARM_PUB PF25598 222 - 491 2.3e-06 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 245 - 470 7.5e-11 ARMC5
Arm PF00514 288 - 325 4.1e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65200
fragaria_vesca FvH4_5g16420
malus_domestica MD06G1180900.v1.1 MD14G1186000.v1.1
prunus_persica Prupe.5G178900_v2.0.a1
pyrus_communis pycom06g16000 pycom14g15480
rosa_chinensis RchiOBHm_Chr7g0179681
rosa_laevigata RLG00000005331
rosa_multiflora Rmu_sc0005329.1_g000033
rosa_roxburghii Rroxscaffold_155G00443810 Rroxscaffold_3G00273550
rosa_rugosa Rorug06G0427300
rosa_samantha Rh7BG025900 Rh7DG027500
rosa_wichuraiana Rw7G002150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 547
Acc65I GGTACC 1 cut(s) 1578
AccB1I GGYRCC 2 cut(s) 1171, 1578
AccBSI CCGCTC 4 cut(s) 45, 153, 409, 1027
AccI GTMKAC 3 cut(s) 462, 909, 1310
AclWI GGATC 2 cut(s) 921, 934
AcoI YGGCCR 5 cut(s) 133, 410, 448, 454, 545
AcsI RAATTY 2 cut(s) 173, 616
AcuI CTGAAG 1 cut(s) 949
AcyI GRCGYC 1 cut(s) 1172
AfaI GTAC 3 cut(s) 1340, 1549, 1580
AgsI TTSAA 1 cut(s) 919
AhdI GACNNNNNGTC 1 cut(s) 1306
AjnI CCWGG 3 cut(s) 725, 969, 1212
Alw21I GWGCWC 4 cut(s) 195, 447, 744, 948
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 2 cut(s) 921, 934
Ama87I CYCGRG 2 cut(s) 188, 1175
ApaI GGGCCC 1 cut(s) 337
ApeKI GCWGC 3 cut(s) 64, 769, 1610
ApoI RAATTY 2 cut(s) 173, 616
AseI ATTAAT 1 cut(s) 630
Asp718I GGTACC 1 cut(s) 1578
AspS9I GGNCC 6 cut(s) 204, 210, 333, 334, 778, 1589
AsuC2I CCSGG 9 cut(s) 97, 116, 208, 332, 1176, 1177, 1370, 1576, 1593
AsuHPI GGTGA 3 cut(s) 715, 883, 1526
AsuII TTCGAA 1 cut(s) 614
AvaI CYCGRG 2 cut(s) 188, 1175
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 337
BaeI ACNNNNGTAYC 2 cut(s) 1539, 1572
BamHI GGATCC 1 cut(s) 926
BanI GGYRCC 2 cut(s) 1171, 1578
BanII GRGCYC 5 cut(s) 195, 337, 447, 744, 1563
BauI CACGAG 1 cut(s) 1127
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 4 cut(s) 195, 447, 744, 948
BbvCI CCTCAGC 1 cut(s) 1283
BbvI GCAGC 3 cut(s) 76, 756, 1597
BccI CCATC 4 cut(s) 263, 334, 988, 1505
BceAI ACGGC 1 cut(s) 532
BciT130I CCWGG 3 cut(s) 727, 971, 1214
BclI TGATCA 1 cut(s) 1467
BcnI CCSGG 9 cut(s) 97, 116, 208, 332, 1176, 1177, 1370, 1576, 1593
BcoDI GTCTC 1 cut(s) 802
BfmI CTRYAG 1 cut(s) 805
BfoI RGCGCY 5 cut(s) 151, 1088, 1163, 1175, 1337
BglII AGATCT 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 1346
Bme18I GGWCC 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 1306
BmeT110I CYCGRG 2 cut(s) 188, 1175
BmgT120I GGNCC 6 cut(s) 204, 210, 333, 334, 778, 1589
BmiI GGNNCC 8 cut(s) 205, 206, 335, 928, 1173, 1367, 1573, 1580
BmsI GCATC 2 cut(s) 1233, 1269
BpiI GAAGAC 1 cut(s) 990
BplI GAGNNNNNCTC 6 cut(s) 137, 169, 1286, 1318, 1545, 1577
BpmI CTGGAG 3 cut(s) 460, 875, 1572
Bpu10I CCTNAGC 2 cut(s) 743, 1283
Bpu1102I GCTNAGC 1 cut(s) 1346
Bpu14I TTCGAA 1 cut(s) 614
BpuMI CCSGG 9 cut(s) 97, 116, 208, 332, 1176, 1177, 1370, 1576, 1593
BsaBI GATNNNNATC 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 1172
BsaJI CCNNGG 7 cut(s) 451, 764, 975, 1009, 1175, 1351, 1369
Bse118I RCCGGY 1 cut(s) 953
Bse1I ACTGG 2 cut(s) 621, 1555
Bse8I GATNNNNATC 1 cut(s) 998
BseBI CCWGG 3 cut(s) 727, 971, 1214
BseDI CCNNGG 7 cut(s) 451, 764, 975, 1009, 1175, 1351, 1369
BseGI GGATG 4 cut(s) 255, 572, 1284, 1516
BseJI GATNNNNATC 1 cut(s) 998
BseMII CTCAG 5 cut(s) 682, 704, 757, 1274, 1337
BseNI ACTGG 2 cut(s) 621, 1555
BsePI GCGCGC 1 cut(s) 957
BseSI GKGCMC 1 cut(s) 337
BseX3I CGGCCG 4 cut(s) 410, 448, 454, 545
BseXI GCAGC 3 cut(s) 76, 756, 1597
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 742
Bsh1285I CGRYCG 7 cut(s) 289, 413, 451, 457, 548, 887, 1002
BshNI GGYRCC 2 cut(s) 1171, 1578
BsiEI CGRYCG 7 cut(s) 289, 413, 451, 457, 548, 887, 1002
BsiHKAI GWGCWC 4 cut(s) 195, 447, 744, 948
BsiHKCI CYCGRG 2 cut(s) 188, 1175
BslFI GGGAC 2 cut(s) 217, 881
BsmAI GTCTC 1 cut(s) 802
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 2 cut(s) 217, 881
BsoBI CYCGRG 2 cut(s) 188, 1175
Bsp119I TTCGAA 1 cut(s) 614
Bsp120I GGGCCC 1 cut(s) 333
Bsp1286I GDGCHC 6 cut(s) 195, 337, 447, 744, 948, 1563
Bsp1720I GCTNAGC 1 cut(s) 1346
Bsp68I TCGCGA 1 cut(s) 539
BspCNI CTCAG 5 cut(s) 681, 705, 756, 1275, 1338
BspHI TCATGA 1 cut(s) 1470
BspLI GGNNCC 8 cut(s) 205, 206, 335, 928, 1173, 1367, 1573, 1580
BspPI GGATC 2 cut(s) 921, 934
BspQI GCTCTTC 1 cut(s) 968
BspT104I TTCGAA 1 cut(s) 614
BspT107I GGYRCC 2 cut(s) 1171, 1578
BsrBI CCGCTC 4 cut(s) 45, 153, 409, 1027
BsrFI RCCGGY 1 cut(s) 953
BsrI ACTGG 2 cut(s) 621, 1555
BssAI RCCGGY 1 cut(s) 953
BssECI CCNNGG 7 cut(s) 451, 764, 975, 1009, 1175, 1351, 1369
BssHII GCGCGC 1 cut(s) 957
BssNI GRCGYC 1 cut(s) 1172
BssSI CACGAG 1 cut(s) 1127
BssT1I CCWWGG 1 cut(s) 975
Bst2BI CACGAG 1 cut(s) 1127
Bst2UI CCWGG 3 cut(s) 727, 971, 1214
Bst4CI ACNGT 2 cut(s) 814, 1206
Bst6I CTCTTC 5 cut(s) 483, 534, 690, 968, 1415
BstACI GRCGYC 1 cut(s) 1172
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 9 cut(s) 761, 948, 955, 959, 1035, 1064, 1377, 1604, 1608
BstDEI CTNAG 5 cut(s) 668, 713, 743, 1283, 1346
BstDSI CCRYGG 3 cut(s) 451, 764, 1351
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 4 cut(s) 255, 572, 1284, 1516
BstH2I RGCGCY 5 cut(s) 151, 1088, 1163, 1175, 1337
BstMAI GTCTC 1 cut(s) 802
BstMCI CGRYCG 7 cut(s) 289, 413, 451, 457, 548, 887, 1002
BstNI CCWGG 3 cut(s) 727, 971, 1214
BstNSI RCATGY 1 cut(s) 1610
BstSFI CTRYAG 1 cut(s) 805
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 76, 756, 1597
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 2 cut(s) 30, 926
BstYI RGATCY 2 cut(s) 30, 926
BstZI CGGCCG 4 cut(s) 410, 448, 454, 545
BtgI CCRYGG 3 cut(s) 451, 764, 1351
BtgZI GCGATG 2 cut(s) 487, 1256
BtsCI GGATG 4 cut(s) 255, 572, 1284, 1516
BtsIMutI CAGTG 1 cut(s) 710
BtuMI TCGCGA 1 cut(s) 539
Cac8I GCNNGC 9 cut(s) 761, 948, 955, 959, 1035, 1064, 1377, 1604, 1608
CciI TCATGA 1 cut(s) 1470
CciNI GCGGCCGC 2 cut(s) 410, 454
Cfr10I RCCGGY 1 cut(s) 953
Cfr13I GGNCC 6 cut(s) 204, 210, 333, 334, 778, 1589
Cfr42I CCGCGG 2 cut(s) 454, 767
Cfr9I CCCGGG 1 cut(s) 1175
CseI GACGC 6 cut(s) 448, 822, 1108, 1159, 1259, 1321
Csp6I GTAC 3 cut(s) 1339, 1548, 1579
CviAII CATG 5 cut(s) 82, 238, 1030, 1471, 1607
CviQI GTAC 3 cut(s) 1339, 1548, 1579
DdeI CTNAG 5 cut(s) 668, 713, 743, 1283, 1346
DinI GGCGCC 1 cut(s) 1173
DrdI GACNNNNNNGTC 1 cut(s) 547
DriI GACNNNNNGTC 1 cut(s) 1306
DseDI GACNNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 5 cut(s) 133, 410, 448, 454, 545
EagI CGGCCG 4 cut(s) 410, 448, 454, 545
Eam1104I CTCTTC 5 cut(s) 483, 534, 690, 968, 1415
Eam1105I GACNNNNNGTC 1 cut(s) 1306
EarI CTCTTC 5 cut(s) 483, 534, 690, 968, 1415
EciI GGCGGA 3 cut(s) 419, 1500, 1520
Ecl136II GAGCTC 3 cut(s) 193, 445, 742
EclXI CGGCCG 4 cut(s) 410, 448, 454, 545
Eco130I CCWWGG 1 cut(s) 975
Eco24I GRGCYC 5 cut(s) 195, 337, 447, 744, 1563
Eco47I GGWCC 1 cut(s) 204
Eco52I CGGCCG 4 cut(s) 410, 448, 454, 545
Eco53kI GAGCTC 3 cut(s) 193, 445, 742
Eco57I CTGAAG 1 cut(s) 949
Eco88I CYCGRG 2 cut(s) 188, 1175
EcoICRI GAGCTC 3 cut(s) 193, 445, 742
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 2 cut(s) 204, 334
EcoRI GAATTC 2 cut(s) 173, 616
EcoRII CCWGG 3 cut(s) 725, 969, 1212
EcoT14I CCWWGG 1 cut(s) 975
EcoT38I GRGCYC 5 cut(s) 195, 337, 447, 744, 1563
EgeI GGCGCC 1 cut(s) 1173
EheI GGCGCC 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 5 cut(s) 85, 241, 1033, 1474, 1610
FaiI YATR 7 cut(s) 83, 239, 422, 683, 1031, 1472, 1608
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 217, 881
FatI CATG 5 cut(s) 81, 237, 1029, 1470, 1606
FauI CCCGC 3 cut(s) 906, 1177, 1561
FbaI TGATCA 1 cut(s) 1467
FblI GTMKAC 3 cut(s) 462, 909, 1310
FokI GGATG 4 cut(s) 242, 559, 1291, 1523
FriOI GRGCYC 5 cut(s) 195, 337, 447, 744, 1563
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 3 cut(s) 460, 875, 1572
HaeII RGCGCY 5 cut(s) 151, 1088, 1163, 1175, 1337
HgaI GACGC 6 cut(s) 448, 822, 1108, 1159, 1259, 1321
Hin1I GRCGYC 1 cut(s) 1172
Hin1II CATG 5 cut(s) 85, 241, 1033, 1474, 1610
HincII GTYRAC 5 cut(s) 463, 823, 844, 910, 1311
HindII GTYRAC 5 cut(s) 463, 823, 844, 910, 1311
HphI GGTGA 3 cut(s) 715, 883, 1526
Hpy166II GTNNAC 6 cut(s) 463, 823, 844, 910, 1058, 1311
Hpy188III TCNNGA 6 cut(s) 247, 319, 538, 888, 1129, 1471
Hpy8I GTNNAC 6 cut(s) 463, 823, 844, 910, 1058, 1311
HpyAV CCTTC 7 cut(s) 46, 544, 579, 1162, 1227, 1384, 1441
HpyCH4III ACNGT 2 cut(s) 814, 1206
HpyCH4IV ACGT 2 cut(s) 327, 912
HpyCH4V TGCA 4 cut(s) 759, 1033, 1209, 1606
HpyF3I CTNAG 5 cut(s) 668, 713, 743, 1283, 1346
HpySE526I ACGT 2 cut(s) 327, 912
Hsp92I GRCGYC 1 cut(s) 1172
Hsp92II CATG 5 cut(s) 85, 241, 1033, 1474, 1610
KasI GGCGCC 1 cut(s) 1171
KflI GGGWCCC 1 cut(s) 204
KpnI GGTACC 1 cut(s) 1582
KroI GCCGGC 1 cut(s) 953
KroNI GCCGGC 1 cut(s) 955
Ksp22I TGATCA 1 cut(s) 1467
KspI CCGCGG 2 cut(s) 454, 767
LguI GCTCTTC 1 cut(s) 968
LmnI GCTCC 9 cut(s) 50, 158, 198, 406, 680, 739, 943, 1428, 1599
Lsp1109I GCAGC 3 cut(s) 76, 756, 1597
LweI GCATC 2 cut(s) 1233, 1269
MaeII ACGT 2 cut(s) 327, 912
MaeIII GTNAC 1 cut(s) 554
MbiI CCGCTC 4 cut(s) 45, 153, 409, 1027
MfeI CAATTG 1 cut(s) 262
MflI RGATCY 2 cut(s) 30, 926
MhlI GDGCHC 6 cut(s) 195, 337, 447, 744, 948, 1563
MluCI AATT 9 cut(s) 173, 262, 366, 386, 582, 610, 616, 631, 653
Mly113I GGCGCC 1 cut(s) 1172
MlyI GAGTC 7 cut(s) 500, 535, 944, 1014, 1067, 1295, 1316
MmeI TCCRAC 5 cut(s) 135, 246, 309, 465, 1029
MreI CGCCGGCG 1 cut(s) 953
MroNI GCCGGC 1 cut(s) 953
MseI TTAA 5 cut(s) 104, 227, 393, 630, 635
MspA1I CMGCKG 3 cut(s) 453, 766, 904
MunI CAATTG 1 cut(s) 262
MvaI CCWGG 3 cut(s) 727, 971, 1214
NaeI GCCGGC 1 cut(s) 955
NarI GGCGCC 1 cut(s) 1172
NciI CCSGG 9 cut(s) 97, 116, 208, 332, 1176, 1177, 1370, 1576, 1593
NgoMIV GCCGGC 1 cut(s) 953
NlaIII CATG 5 cut(s) 85, 241, 1033, 1474, 1610
NlaIV GGNNCC 8 cut(s) 205, 206, 335, 928, 1173, 1367, 1573, 1580
NmeAIII GCCGAG 6 cut(s) 426, 523, 755, 990, 1055, 1542
NotI GCGGCCGC 2 cut(s) 410, 454
NruI TCGCGA 1 cut(s) 539
NspI RCATGY 1 cut(s) 1610
NspV TTCGAA 1 cut(s) 614
PaeI GCATGC 1 cut(s) 1610
PagI TCATGA 1 cut(s) 1470
PauI GCGCGC 1 cut(s) 957
PciSI GCTCTTC 1 cut(s) 968
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 438
PdiI GCCGGC 1 cut(s) 955
PfeI GAWTC 3 cut(s) 891, 1119, 1541
PflFI GACNNNGTC 1 cut(s) 116
Ple19I CGATCG 1 cut(s) 1002
PleI GAGTC 7 cut(s) 499, 535, 943, 1013, 1067, 1295, 1315
PluTI GGCGCC 1 cut(s) 1175
PpsI GAGTC 7 cut(s) 499, 535, 943, 1013, 1067, 1295, 1315
PpuMI RGGWCCY 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 630
Psp124BI GAGCTC 3 cut(s) 195, 447, 744
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 725, 969, 1212
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 3 cut(s) 725, 969, 1212
PspN4I GGNNCC 8 cut(s) 205, 206, 335, 928, 1173, 1367, 1573, 1580
PspOMI GGGCCC 1 cut(s) 333
PspPI GGNCC 6 cut(s) 204, 210, 333, 334, 778, 1589
PspPPI RGGWCCY 1 cut(s) 204
PsuI RGATCY 2 cut(s) 30, 926
PsyI GACNNNGTC 1 cut(s) 116
PteI GCGCGC 1 cut(s) 957
PvuI CGATCG 1 cut(s) 1002
RruI TCGCGA 1 cut(s) 539
RsaI GTAC 3 cut(s) 1340, 1549, 1580
RsaNI GTAC 3 cut(s) 1339, 1548, 1579
SacI GAGCTC 3 cut(s) 195, 447, 744
SacII CCGCGG 2 cut(s) 454, 767
SalI GTCGAC 3 cut(s) 461, 908, 1309
SapI GCTCTTC 1 cut(s) 968
SaqAI TTAA 5 cut(s) 104, 227, 393, 630, 635
Sau96I GGNCC 6 cut(s) 204, 210, 333, 334, 778, 1589
SchI GAGTC 7 cut(s) 500, 535, 944, 1014, 1067, 1295, 1316
SduI GDGCHC 6 cut(s) 195, 337, 447, 744, 948, 1563
SfaNI GCATC 2 cut(s) 1233, 1269
SfcI CTRYAG 1 cut(s) 805
SfoI GGCGCC 1 cut(s) 1173
Sfr303I CCGCGG 2 cut(s) 454, 767
SfuI TTCGAA 1 cut(s) 614
SgrAI CRCCGGYG 1 cut(s) 953
SgrBI CCGCGG 2 cut(s) 454, 767
SinI GGWCC 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 1177
SphI GCATGC 1 cut(s) 1610
Sse9I AATT 9 cut(s) 173, 262, 366, 386, 582, 610, 616, 631, 653
SspDI GGCGCC 1 cut(s) 1171
SstI GAGCTC 3 cut(s) 195, 447, 744
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 2 cut(s) 814, 1206
TaiI ACGT 2 cut(s) 330, 915
TasI AATT 9 cut(s) 173, 262, 366, 386, 582, 610, 616, 631, 653
TfiI GAWTC 3 cut(s) 891, 1119, 1541
Tru1I TTAA 5 cut(s) 104, 227, 393, 630, 635
Tru9I TTAA 5 cut(s) 104, 227, 393, 630, 635
TscAI CASTG 1 cut(s) 717
TseI GCWGC 3 cut(s) 64, 769, 1610
TspDTI ATGAA 2 cut(s) 70, 561
TspGWI ACGGA 4 cut(s) 145, 304, 484, 667
TspMI CCCGGG 1 cut(s) 1175
TspRI CASTG 1 cut(s) 717
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 204
VspI ATTAAT 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 173, 616
XceI RCATGY 1 cut(s) 1610
XmaI CCCGGG 1 cut(s) 1175
XmiI GTMKAC 3 cut(s) 462, 909, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.