Prupe.5G208100_v2.0.a1

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018710
Physical Location & Seq
Reverse (-)
16582772 .. 16585136
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G208100.1

Sequence Viewer

Length: 1332 bp
ATGGAGATTATTAGCAAATGTATAAGTAGCGCATTTTTGGTATCTGTCATGTTCTTGACAATAGTTTCTCATGCAGTGGCTTATGATTCGTTTGATCCAAATGGGAGGATAAATATCAAATGGGATGTTCTGTCTTGGACTCCTGATGGCTATGTGGCAGCAGTAACAATAATCAACAACCAAATGTACCGGCACATCAAGAGCCCCGGATGGACCTTAGGCTGGACATGGGCTAAGAAGGAAGTGATATGGTCAATGGTGGGAGCTCAAGCCACTGCTCAAGGAGACTGCTCCAAGTTCAAAGCAAATATTCCACACAGCTGCAAGAAAACTCCCACAGTTGTTGACTTGCTTCCTGGGGTTCCGATGAACCAAAGATTTTCAGATTGCTGCAAAAGTGGTGTTATGGCATCATGGGGACAGGACCCCTCAGCTGCAGTCTCAGCATTTCAGCTGAGTGTTGGCCATTCAGGTACTTCAAATAAAACAGTAACACCACCAAAGAATTTTTATTTGCTTGGTCCTGGACCAGGCTACACTTGCAGTGCTGCAACCATTGTACCACCCTCAGTTTCCTTCTCGCCTGATGGCCGCCGTACGACTCAAGCAATGATGACATGGACTTTGGATTGCACTTACTCGCAATTGCTCGTCTCTGAAAATCCAACATGTTGTGTCTCTCTGTCATCTTTCTACAACCCCATGATTACTCCTTGTCCATCTTGTGCTTGTGGTTGTAAGGATGTGAACAATAATTGCATAAATGACCCCAAGGACTCAAGGGTGCTGAATAAAAAAGCCTTAGCTAAGGAAGATGCATCAATGTTACAATGCACAGATCACAGGTGCCCGATCCGAGTGCATTGGCATGTGAAGGCTAACTATCGGGAGTATTGGCGTGTGAAGATTACCATCACCAACTTCAACTACCTGATGAATTATACACAATGGACTCTTGTTGCTCAGCATCCGAACTTCAATAAATTAGCTAATGTCTCTAGCTTTGTCTACAAGCCACTCATTCACTACGGCTCAATAAACGACACCGGCATGTTTTACGGCATACAAAATCATAGTGACCTACTAATGGAAGTTGGGCCTGAGGGATATGTCCAGACAGAGTTGCTTCTTGGAAAGGACATGAAAGCATTCGCATTAGACCAAGGTTGGGCATTTCCTTTCAAACTTTACTTTAATGGCGATGAGTGCAAGATGCCCCTTCCTGATATATATCCAACCCTGCCCAACTCTGCTTATGCAAATTCTATTTCCTCATCTACACTGGCTACAACCCTTTTGCTTTCGGCGCTACTAGTCTTTTTAATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

444

Amino Acids

49.1

Weight (kDa)

8.35

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018710)

Species Orthologous Gene IDs
prunus_persica Prupe.5G208000_v2.0.a1 Prupe.5G208100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183431
rosa_roxburghii Rroxscaffold_3G00270460
rosa_rugosa Rorug06G0457900
rosa_samantha Rh7AG058900 Rh7CG060600 Rh7DG058700
rosa_wichuraiana Rw7G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 1008
AciI CCGC 1 cut(s) 592
AclWI GGATC 2 cut(s) 89, 847
AcoI YGGCCR 2 cut(s) 463, 589
AcsI RAATTY 2 cut(s) 505, 1261
AfaI GTAC 4 cut(s) 188, 475, 561, 598
AfiI CCNNNNNNNGG 4 cut(s) 222, 530, 1087, 1168
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 5 cut(s) 301, 480, 925, 979, 1183
AhlI ACTAGT 1 cut(s) 1312
AjnI CCWGG 3 cut(s) 355, 523, 529
AluBI AGCT 8 cut(s) 266, 321, 434, 454, 806, 989, 1002, 1329
AluI AGCT 8 cut(s) 266, 321, 434, 454, 806, 989, 1002, 1329
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 5 cut(s) 279, 445, 658, 682, 1000
AlwI GGATC 2 cut(s) 89, 847
AoxI GGCC 3 cut(s) 463, 589, 1097
ApeKI GCWGC 5 cut(s) 158, 321, 390, 434, 548
ApoI RAATTY 2 cut(s) 505, 1261
ArsI GACNNNNNNTTYG 2 cut(s) 607, 639
Asp700I GAANNNNTTC 1 cut(s) 1148
AspLEI GCGC 2 cut(s) 32, 1309
AspS9I GGNCC 5 cut(s) 213, 424, 521, 527, 1097
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 907
AvaII GGWCC 4 cut(s) 213, 424, 521, 527
AxyI CCTNAGG 2 cut(s) 217, 1101
BaeGI GKGCMC 1 cut(s) 851
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BalI TGGCCA 1 cut(s) 465
BanI GGYRCC 1 cut(s) 846
BanII GRGCYC 2 cut(s) 206, 268
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 430
BbvI GCAGC 5 cut(s) 170, 308, 377, 421, 535
BccI CCATC 5 cut(s) 140, 204, 581, 727, 920
BceAI ACGGC 3 cut(s) 579, 1045, 1075
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 3 cut(s) 357, 525, 531
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 5 cut(s) 279, 445, 658, 682, 1000
BcuI ACTAGT 1 cut(s) 1312
BfaI CTAG 2 cut(s) 999, 1313
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 1310
BisI GCNGC 6 cut(s) 159, 322, 391, 435, 549, 592
BlpI GCTNAGC 1 cut(s) 963
BlsI GCNGC 6 cut(s) 160, 323, 392, 436, 550, 593
Bme1390I CCNGG 4 cut(s) 207, 357, 525, 531
Bme18I GGWCC 4 cut(s) 213, 424, 521, 527
BmgT120I GGNCC 5 cut(s) 213, 424, 521, 527, 1097
BmiI GGNNCC 3 cut(s) 363, 426, 848
BmrFI CCNGG 4 cut(s) 207, 357, 525, 531
BmsI GCATC 5 cut(s) 419, 805, 827, 976, 1203
Bpu10I CCTNAGC 3 cut(s) 430, 802, 807
Bpu1102I GCTNAGC 1 cut(s) 963
BpuEI CTTGAG 4 cut(s) 252, 264, 588, 763
BpuMI CCSGG 1 cut(s) 207
BsaBI GATNNNNATC 3 cut(s) 113, 911, 1230
BsaJI CCNNGG 4 cut(s) 205, 356, 771, 1162
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 530, 1087, 1168
Bse118I RCCGGY 2 cut(s) 189, 1046
Bse1I ACTGG 1 cut(s) 1287
Bse21I CCTNAGG 2 cut(s) 217, 1101
Bse3DI GCAATG 1 cut(s) 615
Bse8I GATNNNNATC 3 cut(s) 113, 911, 1230
BseBI CCWGG 3 cut(s) 357, 525, 531
BseDI CCNNGG 4 cut(s) 205, 356, 771, 1162
BseGI GGATG 4 cut(s) 130, 215, 748, 967
BseJI GATNNNNATC 3 cut(s) 113, 911, 1230
BseLI CCNNNNNNNGG 4 cut(s) 222, 530, 1087, 1168
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 6 cut(s) 444, 446, 456, 582, 977, 1092
BseNI ACTGG 1 cut(s) 1287
BseSI GKGCMC 1 cut(s) 851
BseXI GCAGC 5 cut(s) 170, 308, 377, 421, 535
BshFI GGCC 3 cut(s) 465, 591, 1099
BshNI GGYRCC 1 cut(s) 846
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 190, 207, 1047
BsiWI CGTACG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 4 cut(s) 222, 530, 1087, 1168
BsmAI GTCTC 5 cut(s) 279, 445, 658, 682, 1000
BsmBI CGTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 1148
BsnI GGCC 3 cut(s) 465, 591, 1099
Bsp1286I GDGCHC 3 cut(s) 206, 268, 851
Bsp143I GATC 3 cut(s) 94, 838, 852
Bsp1720I GCTNAGC 1 cut(s) 963
BspACI CCGC 1 cut(s) 592
BspANI GGCC 3 cut(s) 465, 591, 1099
BspCNI CTCAG 6 cut(s) 443, 447, 455, 581, 976, 1093
BspLI GGNNCC 3 cut(s) 363, 426, 848
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 2 cut(s) 89, 847
BspT107I GGYRCC 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 2 cut(s) 189, 1046
BsrI ACTGG 1 cut(s) 1287
BssAI RCCGGY 2 cut(s) 189, 1046
BssECI CCNNGG 4 cut(s) 205, 356, 771, 1162
BssMI GATC 3 cut(s) 94, 838, 852
BssT1I CCWWGG 2 cut(s) 771, 1162
Bst2UI CCWGG 3 cut(s) 357, 525, 531
Bst4CI ACNGT 2 cut(s) 340, 490
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 4 cut(s) 130, 215, 748, 967
BstH2I RGCGCY 1 cut(s) 1310
BstHHI GCGC 2 cut(s) 32, 1309
BstKTI GATC 3 cut(s) 97, 841, 855
BstMAI GTCTC 5 cut(s) 279, 445, 658, 682, 1000
BstMBI GATC 3 cut(s) 94, 838, 852
BstMWI GCNNNNNNNGC 4 cut(s) 443, 540, 1206, 1306
BstNI CCWGG 3 cut(s) 357, 525, 531
BstNSI RCATGY 3 cut(s) 672, 872, 1054
BstSCI CCNGG 4 cut(s) 205, 355, 523, 529
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 851
BstV1I GCAGC 5 cut(s) 170, 308, 377, 421, 535
Bsu36I CCTNAGG 2 cut(s) 217, 1101
BsuRI GGCC 3 cut(s) 465, 591, 1099
BtgZI GCGATG 1 cut(s) 1215
BtsCI GGATG 4 cut(s) 130, 215, 748, 967
BtsI GCAGTG 3 cut(s) 81, 273, 550
BtsIMutI CAGTG 4 cut(s) 81, 273, 550, 1280
CfoI GCGC 2 cut(s) 32, 1309
Cfr10I RCCGGY 2 cut(s) 189, 1046
Cfr13I GGNCC 5 cut(s) 213, 424, 521, 527, 1097
Csp6I GTAC 4 cut(s) 187, 474, 560, 597
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviQI GTAC 4 cut(s) 187, 474, 560, 597
DpnI GATC 3 cut(s) 96, 840, 854
DpnII GATC 3 cut(s) 94, 838, 852
EaeI YGGCCR 2 cut(s) 463, 589
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 771, 1162
Eco24I GRGCYC 2 cut(s) 206, 268
Eco47I GGWCC 4 cut(s) 213, 424, 521, 527
Eco53kI GAGCTC 1 cut(s) 266
Eco81I CCTNAGG 2 cut(s) 217, 1101
EcoICRI GAGCTC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 355, 523, 529
EcoT14I CCWWGG 2 cut(s) 771, 1162
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 2 cut(s) 206, 268
ErhI CCWWGG 2 cut(s) 771, 1162
Esp3I CGTCTC 1 cut(s) 658
FaqI GGGAC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 6 cut(s) 159, 322, 391, 435, 549, 592
FokI GGATG 4 cut(s) 137, 222, 755, 954
FriOI GRGCYC 2 cut(s) 206, 268
Fsp4HI GCNGC 6 cut(s) 159, 322, 391, 435, 549, 592
FspBI CTAG 2 cut(s) 999, 1313
GlaI GCGC 2 cut(s) 31, 1308
GluI GCNGC 6 cut(s) 159, 322, 391, 435, 549, 592
HaeII RGCGCY 1 cut(s) 1310
HaeIII GGCC 3 cut(s) 465, 591, 1099
HapII CCGG 3 cut(s) 190, 207, 1047
HhaI GCGC 2 cut(s) 32, 1309
Hin6I GCGC 2 cut(s) 30, 1307
HinP1I GCGC 2 cut(s) 30, 1307
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 5 cut(s) 86, 139, 601, 776, 952
HpaII CCGG 3 cut(s) 190, 207, 1047
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 3 cut(s) 346, 748, 1009
Hpy188I TCNGA 5 cut(s) 366, 385, 658, 857, 972
Hpy188III TCNNGA 6 cut(s) 55, 143, 199, 887, 1114, 1223
Hpy8I GTNNAC 3 cut(s) 346, 748, 1009
HpyAV CCTTC 4 cut(s) 232, 586, 868, 1229
HpyCH4III ACNGT 2 cut(s) 340, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 540, 1206, 1306
HspAI GCGC 2 cut(s) 30, 1307
Kzo9I GATC 3 cut(s) 94, 838, 852
LmnI GCTCC 2 cut(s) 263, 296
Lsp1109I GCAGC 5 cut(s) 170, 308, 377, 421, 535
LweI GCATC 5 cut(s) 419, 805, 827, 976, 1203
MaeI CTAG 2 cut(s) 999, 1313
MaeIII GTNAC 4 cut(s) 163, 490, 825, 1076
MalI GATC 3 cut(s) 96, 840, 854
MboI GATC 3 cut(s) 94, 838, 852
MboII GAAGA 2 cut(s) 824, 916
MfeI CAATTG 1 cut(s) 644
MhlI GDGCHC 3 cut(s) 206, 268, 851
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 6 cut(s) 505, 644, 754, 937, 983, 1261
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 4 cut(s) 133, 595, 770, 946
MmeI TCCRAC 2 cut(s) 689, 1259
MnlI CCTC 5 cut(s) 99, 439, 577, 1096, 1282
Mox20I TGGCCA 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 465
MseI TTAA 2 cut(s) 1194, 1322
MslI CAYNNNNRTG 2 cut(s) 867, 1049
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 3 cut(s) 321, 434, 454
MspI CCGG 3 cut(s) 190, 207, 1047
MspR9I CCNGG 4 cut(s) 207, 357, 525, 531
MunI CAATTG 1 cut(s) 644
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 3 cut(s) 357, 525, 531
MwoI GCNNNNNNNGC 4 cut(s) 443, 540, 1206, 1306
NciI CCSGG 1 cut(s) 207
NdeII GATC 3 cut(s) 94, 838, 852
NlaIV GGNNCC 3 cut(s) 363, 426, 848
NmuCI GTSAC 1 cut(s) 1076
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 3 cut(s) 672, 872, 1054
PciI ACATGT 1 cut(s) 668
PctI GAATGC 1 cut(s) 1148
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 1 cut(s) 86
Pfl23II CGTACG 1 cut(s) 596
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 6 cut(s) 160, 323, 392, 436, 550, 593
PleI GAGTC 4 cut(s) 133, 595, 770, 946
PpsI GAGTC 4 cut(s) 133, 595, 770, 946
PpuMI RGGWCCY 1 cut(s) 424
PscI ACATGT 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 3 cut(s) 355, 523, 529
PspGI CCWGG 3 cut(s) 355, 523, 529
PspLI CGTACG 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 363, 426, 848
PspPI GGNCC 5 cut(s) 213, 424, 521, 527, 1097
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 439
PvuII CAGCTG 3 cut(s) 321, 434, 454
RsaI GTAC 4 cut(s) 188, 475, 561, 598
RsaNI GTAC 4 cut(s) 187, 474, 560, 597
RseI CAYNNNNRTG 2 cut(s) 867, 1049
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 1194, 1322
SatI GCNGC 6 cut(s) 159, 322, 391, 435, 549, 592
Sau3AI GATC 3 cut(s) 94, 838, 852
Sau96I GGNCC 5 cut(s) 213, 424, 521, 527, 1097
SchI GAGTC 4 cut(s) 133, 595, 770, 946
ScrFI CCNGG 4 cut(s) 207, 357, 525, 531
SduI GDGCHC 3 cut(s) 206, 268, 851
SfaNI GCATC 5 cut(s) 419, 805, 827, 976, 1203
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 4 cut(s) 213, 424, 521, 527
SmiMI CAYNNNNRTG 2 cut(s) 867, 1049
SmlI CTYRAG 4 cut(s) 267, 279, 603, 778
SmoI CTYRAG 4 cut(s) 267, 279, 603, 778
SpeI ACTAGT 1 cut(s) 1312
Sse9I AATT 6 cut(s) 505, 644, 754, 937, 983, 1261
SsiI CCGC 1 cut(s) 592
SspI AATATT 1 cut(s) 310
SspMI CTAG 2 cut(s) 999, 1313
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 4 cut(s) 205, 355, 523, 529
StyI CCWWGG 2 cut(s) 771, 1162
TaaI ACNGT 2 cut(s) 340, 490
TasI AATT 6 cut(s) 505, 644, 754, 937, 983, 1261
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 1194, 1322
Tru9I TTAA 2 cut(s) 1194, 1322
TscAI CASTG 4 cut(s) 81, 280, 550, 1287
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 5 cut(s) 158, 321, 390, 434, 548
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 3 cut(s) 383, 950, 1157
TspRI CASTG 4 cut(s) 81, 280, 550, 1287
VpaK11BI GGWCC 4 cut(s) 213, 424, 521, 527
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 2 cut(s) 505, 1261
XceI RCATGY 3 cut(s) 672, 872, 1054
XmiI GTMKAC 1 cut(s) 1008
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 2 cut(s) 999, 1313
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.