Rroxscaffold_3G00270460

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018710
Physical Location & Seq
Forward (+)
63017964 .. 63019441
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270460.1

Sequence Viewer

Length: 1155 bp
ATGTACCGGCAAATCAGAAGCCCGGGATGGAGCTTAGGATGGACATGGGCAAAGAAGGAAGTGATCTGGTCCATGGTGGGAGCTAAAGTGACCGATCAAGGGGACTGTTCGAAATTCAAAGGGTACACCCCACTTTGTTGTGAGAAAACTCCAACAGTTATTGACTTGCTTCCCGGAGCTCCTTACAACCAACAGTTCACCAATTGCTGCAAGGGTGGTGTTTTGACATCATTGGGACAAGACCCTTCTACTGCAGTCGCAGCATTTCAGATCAGTGTTGGCTTTGCAGGCACTTCAAATAAAACAGTAAAGCCTCCAAAGAAATTCTCTTTGCTTGGTCCTGGACCAGGCTATACTTGTAGTGCCGCGAACATTGTGCCATCCTCGGTTTCCTTGTCACCTGATGGCCGAAGTAAAACTCGAGCAATGATGACATGGAGTTTGACTTGCACTTACTCACAATTGCTGGCCTCTAAAAGCCCAAAGTGCTGTGTTTCTCTGTCTTCCTTCTACAACCCCTTGATCACTCCTTGTCCATCTTGTGCTTGTGGTTGTAACGATGCAAATAATTGTGTGAATGACATCAAGGATTCAAGTCTGCTACAATCAAAAACCTCAGCCAAGGAAAATGCACCACAACTGTTAAAATGCACAGAACACAAGTGCCCAATCCGAGTTCATTGGCATGTGAAAGCTAACTACAGAGAGTATTGGCGTGTGAAAATTACCATCACCAATTTTAACTTCCTCATGAATTACACACAATGGACACTAGTTGTTCAGCACCCAAATCTCAACAAACTGGCCAATATATCTAGCTTTCTCTATAAGCCACTTATCCAATACAGCCCCATAAATGACACTGGCATGTTTTATGGCATAAAATCTCTTAATGAACTAATAAGGGAAGCTGGGCGTAAGGGATATATCTACACAGAATTGATTCTTAAGAAGGACAAGGATACGTTCACATTAGATCAAGGTTGGGCATTTCCTTTGAGGCTTTACTTCAATGGTGATGAGTGCGTGATGCCCCTTCCTGATCTATACCCTTATCTACCCAACTCTGCTTTCTATAAATTCATATATCCAGTTTCAATATCATCTTCTACACTGGCTACCTTTTTGGTTTTGGTACTGCTAGTCTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

384

Amino Acids

42.82

Weight (kDa)

9.11

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 2 - 153 8.8e-57 COBRA-like protein
COB_C PF25079 162 - 351 9.5e-48 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018710)

Species Orthologous Gene IDs
prunus_persica Prupe.5G208000_v2.0.a1 Prupe.5G208100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183431
rosa_roxburghii Rroxscaffold_3G00270460
rosa_rugosa Rorug06G0457900
rosa_samantha Rh7AG058900 Rh7CG060600 Rh7DG058700
rosa_wichuraiana Rw7G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 368
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 2 cut(s) 406, 804
AcsI RAATTY 3 cut(s) 113, 323, 1079
AfaI GTAC 3 cut(s) 5, 125, 1137
AfiI CCNNNNNNNGG 2 cut(s) 99, 347
AflII CTTAAG 1 cut(s) 947
AgsI TTSAA 5 cut(s) 118, 297, 594, 1012, 1098
AhlI ACTAGT 1 cut(s) 772
AjnI CCWGG 2 cut(s) 340, 346
AjuI GAANNNNNNNTTGG 4 cut(s) 728, 760, 1055, 1087
AluBI AGCT 6 cut(s) 33, 83, 179, 695, 819, 911
AluI AGCT 6 cut(s) 33, 83, 179, 695, 819, 911
Alw21I GWGCWC 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 22, 420
AoxI GGCC 3 cut(s) 406, 468, 804
ApeKI GCWGC 2 cut(s) 207, 260
ApoI RAATTY 3 cut(s) 113, 323, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
Asp700I GAANNNNTTC 1 cut(s) 942
AspS9I GGNCC 3 cut(s) 69, 338, 344
AsuC2I CCSGG 3 cut(s) 23, 24, 174
AsuHPI GGTGA 4 cut(s) 190, 390, 724, 1028
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 2 cut(s) 22, 420
AvaII GGWCC 3 cut(s) 69, 338, 344
BaeGI GKGCMC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 806
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 181
BbvCI CCTCAGC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 194, 272
BccI CCATC 6 cut(s) 21, 33, 388, 398, 544, 737
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 2 cut(s) 342, 348
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 3 cut(s) 23, 24, 174
BcuI ACTAGT 1 cut(s) 772
BfaI CTAG 3 cut(s) 773, 816, 1142
BfmI CTRYAG 2 cut(s) 252, 700
BfrI CTTAAG 1 cut(s) 947
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 3 cut(s) 208, 261, 366
BlsI GCNGC 3 cut(s) 209, 262, 367
Bme1390I CCNGG 5 cut(s) 23, 24, 174, 342, 348
Bme18I GGWCC 3 cut(s) 69, 338, 344
BmeT110I CYCGRG 2 cut(s) 22, 420
BmgT120I GGNCC 3 cut(s) 69, 338, 344
BmrFI CCNGG 5 cut(s) 23, 24, 174, 342, 348
BmsI GCATC 2 cut(s) 550, 1020
BpiI GAAGAC 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 34, 616
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 3 cut(s) 23, 24, 174
BsaJI CCNNGG 4 cut(s) 22, 72, 384, 621
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 347
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 4 cut(s) 807, 868, 1091, 1119
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 342, 348
BseDI CCNNGG 4 cut(s) 22, 72, 384, 621
BseGI GGATG 3 cut(s) 32, 44, 380
BseLI CCNNNNNNNGG 2 cut(s) 99, 347
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 4 cut(s) 807, 868, 1091, 1119
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 2 cut(s) 194, 272
BseYI CCCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 3 cut(s) 408, 470, 806
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 2 cut(s) 22, 420
BsiSI CCGG 3 cut(s) 7, 23, 174
BslFI GGGAC 2 cut(s) 116, 249
BslI CCNNNNNNNGG 2 cut(s) 99, 347
BsmFI GGGAC 2 cut(s) 116, 249
BsnI GGCC 3 cut(s) 408, 470, 806
BsoBI CYCGRG 2 cut(s) 22, 420
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 181, 668
Bsp143I GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 366
BspANI GGCC 3 cut(s) 408, 470, 806
BspCNI CTCAG 1 cut(s) 629
BspFNI CGCG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 750
BspMAI CTGCAG 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 4 cut(s) 807, 868, 1091, 1119
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 4 cut(s) 22, 72, 384, 621
BssMI GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
BssT1I CCWWGG 2 cut(s) 72, 621
Bst2UI CCWGG 2 cut(s) 342, 348
Bst4CI ACNGT 5 cut(s) 107, 157, 195, 307, 642
BstAFI CTTAAG 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 289, 468
BstDEI CTNAG 2 cut(s) 34, 616
BstDSI CCRYGG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 32, 44, 380
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 6 cut(s) 66, 97, 273, 525, 979, 1045
BstMBI GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 260, 288, 486
BstNI CCWGG 2 cut(s) 342, 348
BstNSI RCATGY 2 cut(s) 689, 871
BstSCI CCNGG 5 cut(s) 21, 22, 172, 340, 346
BstSFI CTRYAG 2 cut(s) 252, 700
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 194, 272
BstV2I GAAGAC 1 cut(s) 495
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 3 cut(s) 408, 470, 806
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 32, 44, 380
BtsIMutI CAGTG 3 cut(s) 280, 861, 1112
Cac8I GCNNGC 2 cut(s) 289, 468
CciI TCATGA 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 69, 338, 344
Cfr9I CCCGGG 1 cut(s) 22
Csp6I GTAC 3 cut(s) 4, 124, 1136
CviAII CATG 6 cut(s) 45, 73, 435, 686, 751, 868
CviQI GTAC 3 cut(s) 4, 124, 1136
DdeI CTNAG 2 cut(s) 34, 616
DpnI GATC 6 cut(s) 65, 96, 272, 524, 978, 1044
DpnII GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
EaeI YGGCCR 2 cut(s) 406, 804
Ecl136II GAGCTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 72, 621
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 69, 338, 344
Eco53kI GAGCTC 1 cut(s) 179
Eco88I CYCGRG 2 cut(s) 22, 420
EcoICRI GAGCTC 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 340, 346
EcoT14I CCWWGG 2 cut(s) 72, 621
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 72, 621
FaeI CATG 6 cut(s) 48, 76, 438, 689, 754, 871
FaqI GGGAC 2 cut(s) 116, 249
FatI CATG 6 cut(s) 44, 72, 434, 685, 750, 867
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 208, 261, 366
FokI GGATG 3 cut(s) 39, 51, 367
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 208, 261, 366
FspBI CTAG 3 cut(s) 773, 816, 1142
GluI GCNGC 3 cut(s) 208, 261, 366
GsaI CCCAGC 1 cut(s) 915
HaeIII GGCC 3 cut(s) 408, 470, 806
HapII CCGG 3 cut(s) 7, 23, 174
Hin1II CATG 6 cut(s) 48, 76, 438, 689, 754, 871
HinfI GANTC 2 cut(s) 590, 943
HpaII CCGG 3 cut(s) 7, 23, 174
HphI GGTGA 4 cut(s) 190, 390, 724, 1028
Hpy166II GTNNAC 3 cut(s) 126, 198, 969
Hpy188I TCNGA 3 cut(s) 17, 270, 674
Hpy188III TCNNGA 2 cut(s) 751, 1040
Hpy8I GTNNAC 3 cut(s) 126, 198, 969
HpyAV CCTTC 5 cut(s) 49, 255, 517, 946, 1046
HpyCH4III ACNGT 5 cut(s) 107, 157, 195, 307, 642
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 7 cut(s) 210, 254, 287, 450, 563, 632, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 288, 486
HpyF3I CTNAG 2 cut(s) 34, 616
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 6 cut(s) 48, 76, 438, 689, 754, 871
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
LmnI GCTCC 4 cut(s) 30, 80, 176, 184
Lsp1109I GCAGC 2 cut(s) 194, 272
LweI GCATC 2 cut(s) 550, 1020
MaeI CTAG 3 cut(s) 773, 816, 1142
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 3 cut(s) 88, 396, 554
MalI GATC 6 cut(s) 65, 96, 272, 524, 978, 1044
MboI GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
MboII GAAGA 2 cut(s) 495, 1098
MfeI CAATTG 2 cut(s) 202, 461
MhlI GDGCHC 2 cut(s) 181, 668
MlsI TGGCCA 1 cut(s) 806
MluNI TGGCCA 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 6 cut(s) 324, 394, 481, 625, 758, 993
Mox20I TGGCCA 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 942
MscI TGGCCA 1 cut(s) 806
MseI TTAA 4 cut(s) 644, 741, 891, 948
MslI CAYNNNNRTG 2 cut(s) 684, 866
Msp20I TGGCCA 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 3 cut(s) 7, 23, 174
MspR9I CCNGG 5 cut(s) 23, 24, 174, 342, 348
MunI CAATTG 2 cut(s) 202, 461
MvaI CCWGG 2 cut(s) 342, 348
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 260, 288, 486
NciI CCSGG 3 cut(s) 23, 24, 174
NcoI CCATGG 1 cut(s) 72
NdeII GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
NlaIII CATG 6 cut(s) 48, 76, 438, 689, 754, 871
NmuCI GTSAC 2 cut(s) 88, 396
NspI RCATGY 2 cut(s) 689, 871
NspV TTCGAA 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 420
PagI TCATGA 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 2 cut(s) 590, 943
PfoI TCCNGGA 2 cut(s) 172, 340
PkrI GCNGC 3 cut(s) 209, 262, 367
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 340, 346
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 2 cut(s) 340, 346
PspPI GGNCC 3 cut(s) 69, 338, 344
PspXI VCTCGAGB 1 cut(s) 420
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 3 cut(s) 5, 125, 1137
RsaNI GTAC 3 cut(s) 4, 124, 1136
RseI CAYNNNNRTG 2 cut(s) 684, 866
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 4 cut(s) 644, 741, 891, 948
SatI GCNGC 3 cut(s) 208, 261, 366
Sau3AI GATC 6 cut(s) 63, 94, 270, 522, 976, 1042
Sau96I GGNCC 3 cut(s) 69, 338, 344
ScrFI CCNGG 5 cut(s) 23, 24, 174, 342, 348
SduI GDGCHC 2 cut(s) 181, 668
SfaNI GCATC 2 cut(s) 550, 1020
SfcI CTRYAG 2 cut(s) 252, 700
Sfr274I CTCGAG 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 3 cut(s) 69, 338, 344
SlaI CTCGAG 1 cut(s) 420
SmaI CCCGGG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 684, 866
SmlI CTYRAG 2 cut(s) 420, 947
SmoI CTYRAG 2 cut(s) 420, 947
SpeI ACTAGT 1 cut(s) 772
SsiI CCGC 1 cut(s) 366
SspMI CTAG 3 cut(s) 773, 816, 1142
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 5 cut(s) 21, 22, 172, 340, 346
StyI CCWWGG 2 cut(s) 72, 621
TaaI ACNGT 5 cut(s) 107, 157, 195, 307, 642
TaiI ACGT 1 cut(s) 968
TaqI TCGA 2 cut(s) 110, 421
TaqII GACCGA 1 cut(s) 107
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 2 cut(s) 590, 943
Tru1I TTAA 4 cut(s) 644, 741, 891, 948
Tru9I TTAA 4 cut(s) 644, 741, 891, 948
TscAI CASTG 3 cut(s) 280, 868, 1119
TseFI GTSAC 2 cut(s) 88, 396
TseI GCWGC 2 cut(s) 207, 260
Tsp45I GTSAC 2 cut(s) 88, 396
TspDTI ATGAA 4 cut(s) 668, 767, 909, 1072
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 3 cut(s) 280, 868, 1119
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 3 cut(s) 69, 338, 344
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 3 cut(s) 113, 323, 1079
XceI RCATGY 2 cut(s) 689, 871
XhoI CTCGAG 1 cut(s) 420
XmaI CCCGGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 3 cut(s) 773, 816, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.