Rorug06G0457900

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018710
Physical Location & Seq
Reverse (-)
58504505 .. 58507748
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0457900.1

Sequence Viewer

Length: 717 bp
ATGGAAATTGACAGATTAGATGGTCGTACACCAAACCAGTTGAGACCACTGGCCTGTACTCGCAACGTTCTCAACCGAGCTCATGGCTCTGCCAGTTGGTGTCAAGGGGATACCAAAGTTCTTGCTGCAGTTTATGGACCCAAAGCGGGGACAAAGAAGAATGAAAACCCTGAAAAGGCTTGCATTGAGGTTATTTGGAAGCCTAAAACAGGCCAGAGTGGAAAAACAGAAAGGGAATATGAGATGATATTGAAAAGGACCTTGCAAAGCATCTGTATACTGACTCTCAACCCAAATACTACGACCTCGGTTATTATTCAGGTTGTCAATGATGATGGTGCTCTTTTGCCATGCGCCATAAATGCAGCATGTGCTGCCCTTGTTGATGCTGGGATTCCTTTAAAGCATCTTGCTGTTGCAATATGTTGTTGCTTGGCAGAGAGTGGATACGTCATATTGGATCCTAGCAAGCTAGAAGAGCAGAAAATGAAGGCATTTGTATATTTGGTCTTCCCAAACTCAGTTCTCTCAAACCTTCCAGAAGGACAGTTGAAGGTGCAAGGCGAACCAATGGAACATGGTATCATCACCTCTGTAACCCAGGGTGCAATGCCAGTTGATGACTATCTCCACTGTTTAGAACGAGGGCGCGCAGCTACTGCCAAGATGTCTGCTTTTCTCAGAAAGAGCCTGCAACCAAAGCTCCCAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

238

Amino Acids

25.88

Weight (kDa)

8.29

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 13 - 133 7.2e-28 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018710)

Species Orthologous Gene IDs
prunus_persica Prupe.5G208000_v2.0.a1 Prupe.5G208100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183431
rosa_roxburghii Rroxscaffold_3G00270460
rosa_rugosa Rorug06G0457900
rosa_samantha Rh7AG058900 Rh7CG060600 Rh7DG058700
rosa_wichuraiana Rw7G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AccII CGCG 1 cut(s) 651
AciI CCGC 1 cut(s) 146
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 455, 468
AfaI GTAC 2 cut(s) 28, 58
AfiI CCNNNNNNNGG 4 cut(s) 146, 147, 175, 209
AgsI TTSAA 2 cut(s) 253, 553
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 4 cut(s) 80, 472, 656, 703
AluI AGCT 4 cut(s) 80, 472, 656, 703
Alw21I GWGCWC 2 cut(s) 82, 343
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 2 cut(s) 51, 211
ApeKI GCWGC 4 cut(s) 125, 365, 374, 653
AspLEI GCGC 3 cut(s) 356, 651, 653
AspS9I GGNCC 2 cut(s) 137, 258
AsuHPI GGTGA 1 cut(s) 580
AvaII GGWCC 2 cut(s) 137, 258
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BamHI GGATCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 502
Bbv12I GWGCWC 2 cut(s) 82, 343
BbvI GCAGC 4 cut(s) 112, 361, 377, 665
BccI CCATC 2 cut(s) 14, 329
BciT130I CCWGG 1 cut(s) 602
BciVI GTATCC 2 cut(s) 103, 440
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 465, 473
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 2 cut(s) 103, 440
BisI GCNGC 4 cut(s) 126, 366, 375, 654
BlsI GCNGC 4 cut(s) 127, 367, 376, 655
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 2 cut(s) 137, 258
BmgT120I GGNCC 2 cut(s) 137, 258
BmiI GGNNCC 2 cut(s) 139, 462
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 3 cut(s) 279, 376, 415
BpiI GAAGAC 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 306, 600, 601
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 147, 175, 209
Bse1I ACTGG 4 cut(s) 37, 54, 93, 614
Bse3DI GCAATG 1 cut(s) 615
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 3 cut(s) 306, 600, 601
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 146, 147, 175, 209
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 2 cut(s) 534, 694
BseNI ACTGG 4 cut(s) 37, 54, 93, 614
BsePI GCGCGC 1 cut(s) 649
BseXI GCAGC 4 cut(s) 112, 361, 377, 665
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 53, 213
BsiHKAI GWGCWC 2 cut(s) 82, 343
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 4 cut(s) 146, 147, 175, 209
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 53, 213
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 82, 343
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 1 cut(s) 146
BspANI GGCC 2 cut(s) 53, 213
BspCNI CTCAG 2 cut(s) 533, 693
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 139, 462
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 455, 468
BspQI GCTCTTC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 615
BsrI ACTGG 4 cut(s) 37, 54, 93, 614
BssECI CCNNGG 3 cut(s) 306, 600, 601
BssHII GCGCGC 1 cut(s) 649
BssMI GATC 1 cut(s) 460
BssNAI GTATAC 1 cut(s) 278
Bst1107I GTATAC 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 2 cut(s) 549, 635
Bst6I CTCTTC 1 cut(s) 471
BstAPI GCANNNNNTGC 3 cut(s) 371, 374, 659
BstC8I GCNNGC 4 cut(s) 181, 470, 651, 692
BstDEI CTNAG 2 cut(s) 520, 680
BstENI CCTNNNNNAGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 3 cut(s) 356, 651, 653
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 6 cut(s) 362, 371, 374, 478, 659, 700
BstNI CCWGG 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 112, 361, 377, 665
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BstZ17I GTATAC 1 cut(s) 278
BsuI GTATCC 2 cut(s) 103, 440
BsuRI GGCC 2 cut(s) 53, 213
BtsIMutI CAGTG 2 cut(s) 47, 631
Cac8I GCNNGC 4 cut(s) 181, 470, 651, 692
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 3 cut(s) 356, 651, 653
Cfr13I GGNCC 2 cut(s) 137, 258
Csp6I GTAC 2 cut(s) 27, 57
CviAII CATG 4 cut(s) 83, 351, 369, 578
CviQI GTAC 2 cut(s) 27, 57
DdeI CTNAG 2 cut(s) 520, 680
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraI TTTAAA 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 137, 258
Eco53kI GAGCTC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 4 cut(s) 86, 354, 372, 581
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 82, 350, 368, 577
FauI CCCGC 1 cut(s) 139
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 126, 366, 375, 654
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 126, 366, 375, 654
FspBI CTAG 2 cut(s) 465, 473
GlaI GCGC 3 cut(s) 355, 650, 652
GluI GCNGC 4 cut(s) 126, 366, 375, 654
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 53, 213
HhaI GCGC 3 cut(s) 356, 651, 653
Hin1II CATG 4 cut(s) 86, 354, 372, 581
Hin6I GCGC 3 cut(s) 354, 649, 651
HinP1I GCGC 3 cut(s) 354, 649, 651
HinfI GANTC 2 cut(s) 283, 394
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 2 cut(s) 29, 278
Hpy188I TCNGA 1 cut(s) 683
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 2 cut(s) 29, 278
HpyAV CCTTC 4 cut(s) 484, 536, 545, 547
HpyCH4III ACNGT 2 cut(s) 549, 635
HpyCH4IV ACGT 2 cut(s) 66, 450
HpyCH4V TGCA 8 cut(s) 128, 183, 265, 365, 419, 559, 608, 694
HpyF10VI GCNNNNNNNGC 6 cut(s) 362, 371, 374, 478, 659, 700
HpyF3I CTNAG 2 cut(s) 520, 680
HpySE526I ACGT 2 cut(s) 66, 450
Hsp92II CATG 4 cut(s) 86, 354, 372, 581
HspAI GCGC 3 cut(s) 354, 649, 651
Kzo9I GATC 1 cut(s) 460
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 708
Lsp1109I GCAGC 4 cut(s) 112, 361, 377, 665
LweI GCATC 3 cut(s) 279, 376, 415
MaeI CTAG 2 cut(s) 465, 473
MaeII ACGT 2 cut(s) 66, 450
MaeIII GTNAC 1 cut(s) 595
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 3 cut(s) 169, 488, 502
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 2 cut(s) 82, 343
MluCI AATT 2 cut(s) 6, 708
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 4 cut(s) 181, 316, 601, 638
MseI TTAA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 602
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 602
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 6 cut(s) 362, 371, 374, 478, 659, 700
NdeII GATC 1 cut(s) 460
NlaIII CATG 4 cut(s) 86, 354, 372, 581
NlaIV GGNNCC 2 cut(s) 139, 462
NspI RCATGY 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 601
PauI GCGCGC 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 4 cut(s) 127, 367, 376, 655
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 600
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 139, 462
PspPI GGNCC 2 cut(s) 137, 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 460
PteI GCGCGC 1 cut(s) 649
RsaI GTAC 2 cut(s) 28, 58
RsaNI GTAC 2 cut(s) 27, 57
SacI GAGCTC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 4 cut(s) 126, 366, 375, 654
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 2 cut(s) 137, 258
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 2 cut(s) 82, 343
SfaNI GCATC 3 cut(s) 279, 376, 415
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 137, 258
Sse9I AATT 2 cut(s) 6, 708
SsiI CCGC 1 cut(s) 146
SspMI CTAG 2 cut(s) 465, 473
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 549, 635
TaiI ACGT 2 cut(s) 69, 453
TasI AATT 2 cut(s) 6, 708
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 2 cut(s) 54, 638
TseI GCWGC 4 cut(s) 125, 365, 374, 653
TspDTI ATGAA 2 cut(s) 177, 503
TspRI CASTG 2 cut(s) 54, 638
VpaK11BI GGWCC 2 cut(s) 137, 258
XagI CCTNNNNNAGG 1 cut(s) 207
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 2 cut(s) 465, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.