Prupe.6G107700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018402
Physical Location & Seq
Forward (+)
7669751 .. 7670829
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G107700.1

Sequence Viewer

Length: 315 bp
ATGTCCTCCTATATTCTTTGCATTGCCCTCATATATTCCCTGCTCTTCTTTCCTTGTTTTGACGTCTCTTTGGCTGCAAGAAACATCCCGTCTAGCGCCCCGAGCACGATGGTGAGGCCTTTGGTCACGGAGGGGCTAGATCACTATGTGAGCATGAAGCCTCAGGACTTGAATCACAAGCAACAAGTTTTTCATGGGAGGGAAGTGAATGGTTGCTTGCCAAAAGGGTTTAGGCATGCCTCTGCTCCAAGCCGGTATGTGAACTATCACGCACTTGGCCAAGGCTGTTCTTCTATGCGCTCCAAGAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.57

Weight (kDa)

9.42

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018402)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g31180
prunus_persica Prupe.6G107700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057831
rosa_laevigata RLG00000035181
rosa_roxburghii Rroxscaffold_1G00022670
rosa_rugosa Rorug05G0309900
rosa_samantha Rh5AG378100 Rh5BG389300 Rh5CG413600 Rh5DG404200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 2 cut(s) 116, 277
ApeKI GCWGC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 98, 300
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 162
BalI TGGCCA 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 2 cut(s) 93, 137
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 2 cut(s) 118, 279
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 2 cut(s) 118, 279
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 2 cut(s) 118, 279
BspCNI CTCAG 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 218, 237
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 300
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 2 cut(s) 118, 279
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 218, 237
CfoI GCGC 2 cut(s) 98, 300
Cfr10I RCCGGY 1 cut(s) 252
CviAII CATG 3 cut(s) 154, 194, 236
CviJI RGCY 7 cut(s) 74, 118, 136, 160, 252, 279, 285
CviKI_1 RGCY 7 cut(s) 74, 118, 136, 160, 252, 279, 285
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 157, 197, 239
FaiI YATR 9 cut(s) 12, 32, 34, 147, 155, 195, 237, 258, 296
FatI CATG 3 cut(s) 153, 193, 235
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 93, 137
GlaI GCGC 2 cut(s) 97, 299
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 2 cut(s) 118, 279
HapII CCGG 1 cut(s) 253
HhaI GCGC 2 cut(s) 98, 300
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 157, 197, 239
Hin6I GCGC 2 cut(s) 96, 298
HinP1I GCGC 2 cut(s) 96, 298
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 21, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 157, 197, 239
HspAI GCGC 2 cut(s) 96, 298
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 250, 305
LpnPI CCDG 3 cut(s) 53, 149, 266
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 2 cut(s) 93, 137
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 37, 282
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 7 cut(s) 16, 38, 108, 124, 171, 192, 250
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 279
MspI CCGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 1 cut(s) 139
NlaIII CATG 3 cut(s) 157, 197, 239
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 110
PaeI GCATGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 50
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 107
SetI ASST 2 cut(s) 66, 313
SmiMI CAYNNNNRTG 1 cut(s) 110
SphI GCATGC 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 118
SspMI CTAG 2 cut(s) 93, 137
StuI AGGCCT 1 cut(s) 118
StyI CCWWGG 1 cut(s) 280
TaiI ACGT 1 cut(s) 66
TfiI GAWTC 1 cut(s) 172
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 170, 182
TspGWI ACGGA 1 cut(s) 143
XceI RCATGY 1 cut(s) 239
XspI CTAG 2 cut(s) 93, 137
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.