RLG00000035181

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
62409050 .. 62411849
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035181

Sequence Viewer

Length: 309 bp
ATGTCTACTATTGTTCTTTACATTGTTGTCATCATACATTCCTTACTATTGTTGTCTTGTTTTGATGTGTCTATGGCTGCGAGGAACATCCCATCCAGCGCTCCGAGCACAATGGTGAGGCCTCTGGTCACTGAGGGAGAAGATCGTTATGTGAGCATTATGCCTCAGGACTTGAAACACAAGCAACAAGTCTTTCATGGGAGGGAAGTAAAAGGTTGCATGCCGAAAGGGTTTAGGCATGCTTCCACTCCAAGCCGATCCAGCTTGACAGGCAAAGATTTGGCAGTGGCTCGTGATAACAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

9.69

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018402)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g31180
prunus_persica Prupe.6G107700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057831
rosa_laevigata RLG00000035181
rosa_roxburghii Rroxscaffold_1G00022670
rosa_rugosa Rorug05G0309900
rosa_samantha Rh5AG378100 Rh5BG389300 Rh5CG413600 Rh5DG404200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 252
AfeI AGCGCT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 252
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 165
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 87, 92
BseMII CTCAG 2 cut(s) 123, 179
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 110
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 142, 257
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 124, 178
BspPI GGATC 1 cut(s) 252
BssMI GATC 2 cut(s) 142, 257
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 221, 240
BstDEI CTNAG 2 cut(s) 132, 165
BstF5I GGATG 2 cut(s) 87, 92
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 145, 260
BstMBI GATC 2 cut(s) 142, 257
BstMWI GCNNNNNNNGC 3 cut(s) 105, 261, 270
BstNSI RCATGY 2 cut(s) 223, 242
BstV1I GCAGC 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 87, 92
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 129, 291
Cac8I GCNNGC 2 cut(s) 221, 240
CfoI GCGC 1 cut(s) 101
CviAII CATG 3 cut(s) 197, 220, 239
CviJI RGCY 5 cut(s) 77, 121, 255, 264, 290
CviKI_1 RGCY 5 cut(s) 77, 121, 255, 264, 290
DdeI CTNAG 2 cut(s) 132, 165
DpnI GATC 2 cut(s) 144, 259
DpnII GATC 2 cut(s) 142, 257
Eco147I AGGCCT 1 cut(s) 121
Eco47III AGCGCT 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 165
FaeI CATG 3 cut(s) 200, 223, 242
FaiI YATR 7 cut(s) 35, 74, 150, 161, 198, 221, 240
FatI CATG 3 cut(s) 196, 219, 238
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 74, 79
Fsp4HI GCNGC 1 cut(s) 78
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 121
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 200, 223, 242
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 167, 293
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 261, 270
HpyF3I CTNAG 2 cut(s) 132, 165
Hsp92II CATG 3 cut(s) 200, 223, 242
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 142, 257
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 109, 110, 152, 255, 274
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 144, 259
MboI GATC 2 cut(s) 142, 257
MboII GAAGA 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 6 cut(s) 75, 111, 127, 132, 174, 195
MslI CAYNNNNRTG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 105, 261, 270
NdeII GATC 2 cut(s) 142, 257
NlaIII CATG 3 cut(s) 200, 223, 242
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 223, 242
OliI CACNNNNGTG 1 cut(s) 113
PaeI GCATGC 2 cut(s) 223, 242
PceI AGGCCT 1 cut(s) 121
PkrI GCNGC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 142, 257
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 217, 266
SmiMI CAYNNNNRTG 1 cut(s) 113
SphI GCATGC 2 cut(s) 223, 242
SseBI AGGCCT 1 cut(s) 121
StuI AGGCCT 1 cut(s) 121
TscAI CASTG 2 cut(s) 136, 291
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 2 cut(s) 136, 291
XceI RCATGY 2 cut(s) 223, 242
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.