Rh5CG413600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
55988941 .. 55991728
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG413600.1

Sequence Viewer

Length: 279 bp
ATGTCTACTATTGTTCTTTACATTGTTGTCATCATACATTCCTTACTATTGTTGTCTTGTTTTGATGTATCTATGGCTGCGAGGAACATCCCATCCAGCGCTCCGAGCACAATGGTGAGGCCTCTGGTCACTGAGGGAGAAGATCGTTATGTGAGCATTATGCCTCAGGACTTGAAACACAAGCAACAAGTCTTTCATGGGAGGGAAGTCAAAGGTTGCATGCCGAAAGGGTTTAGGCATGCTTCCGCTCCAAGCCGCTCTCACTCAGATCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

9.18

Isoelectric Point (pI)

72.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018402)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g31180
prunus_persica Prupe.6G107700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057831
rosa_laevigata RLG00000035181
rosa_roxburghii Rroxscaffold_1G00022670
rosa_rugosa Rorug05G0309900
rosa_samantha Rh5AG378100 Rh5BG389300 Rh5CG413600 Rh5DG404200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 248, 258
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 246, 256
AclWI GGATC 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 263
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 2 cut(s) 78, 256
BlsI GCNGC 2 cut(s) 79, 257
Bse21I CCTNAGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 87, 92
BseMII CTCAG 3 cut(s) 123, 179, 279
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 110
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 142, 268
BspACI CCGC 2 cut(s) 246, 256
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 3 cut(s) 124, 178, 278
BspPI GGATC 1 cut(s) 263
BsrBI CCGCTC 2 cut(s) 248, 258
BssMI GATC 2 cut(s) 142, 268
BstC8I GCNNGC 2 cut(s) 221, 240
BstDEI CTNAG 3 cut(s) 132, 165, 265
BstF5I GGATG 2 cut(s) 87, 92
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 145, 271
BstMBI GATC 2 cut(s) 142, 268
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 223, 242
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 87, 92
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 221, 240
CfoI GCGC 1 cut(s) 101
CviAII CATG 3 cut(s) 197, 220, 239
CviJI RGCY 4 cut(s) 77, 121, 255, 275
CviKI_1 RGCY 4 cut(s) 77, 121, 255, 275
DdeI CTNAG 3 cut(s) 132, 165, 265
DpnI GATC 2 cut(s) 144, 270
DpnII GATC 2 cut(s) 142, 268
Eco147I AGGCCT 1 cut(s) 121
Eco47III AGCGCT 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 165
FaeI CATG 3 cut(s) 200, 223, 242
FaiI YATR 7 cut(s) 35, 74, 150, 161, 198, 221, 240
FatI CATG 3 cut(s) 196, 219, 238
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 78, 256
FokI GGATG 2 cut(s) 74, 79
Fsp4HI GCNGC 2 cut(s) 78, 256
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 78, 256
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 121
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 200, 223, 242
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 105, 268
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 3 cut(s) 132, 165, 265
Hsp92II CATG 3 cut(s) 200, 223, 242
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 142, 268
LmnI GCTCC 2 cut(s) 106, 253
LpnPI CCDG 3 cut(s) 109, 110, 152
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 144, 270
MbiI CCGCTC 2 cut(s) 248, 258
MboI GATC 2 cut(s) 142, 268
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 6 cut(s) 75, 111, 127, 132, 174, 195
MslI CAYNNNNRTG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 2 cut(s) 142, 268
NlaIII CATG 3 cut(s) 200, 223, 242
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 223, 242
OliI CACNNNNGTG 1 cut(s) 113
PaeI GCATGC 2 cut(s) 223, 242
PceI AGGCCT 1 cut(s) 121
PkrI GCNGC 2 cut(s) 79, 257
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 2 cut(s) 78, 256
Sau3AI GATC 2 cut(s) 142, 268
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 217, 277
SmiMI CAYNNNNRTG 1 cut(s) 113
SphI GCATGC 2 cut(s) 223, 242
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 2 cut(s) 246, 256
StuI AGGCCT 1 cut(s) 121
TauI GCSGC 1 cut(s) 258
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 136
XceI RCATGY 2 cut(s) 223, 242
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.