Rroxscaffold_1G00022670

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
28040383 .. 28042953
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022670.1

Sequence Viewer

Length: 261 bp
ATGGACGGAAAACAGAAACCTGTAAAGGTCATCATGAACATCCCATCCAGCGCTCCGAGCACAATGGTGAGGCCTCTGGTCACTGAGGGAGAAGATCGTTATGTGAGCATTATGCCTCAGGACTTGAAACACAAGCAACAAGTCTTTCATGGGAGGGAAGTCAAAGGTTGCATGCCGAAAGGGTTTAGGCATGCTTCCGCTCCAAGCCGATTCGTGAACTCTGCAGGCTGTTCTTCAGATATGCACACCAAGAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.54

Weight (kDa)

9.86

Isoelectric Point (pI)

65.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018402)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g31180
prunus_persica Prupe.6G107700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057831
rosa_laevigata RLG00000035181
rosa_roxburghii Rroxscaffold_1G00022670
rosa_rugosa Rorug05G0309900
rosa_samantha Rh5AG378100 Rh5BG389300 Rh5CG413600 Rh5DG404200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 219
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 127
AleI CACNNNNGTG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
Alw21I GWGCWC 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 54
Bse21I CCTNAGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 39, 44
BseMII CTCAG 2 cut(s) 75, 131
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 62
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 76, 130
BspHI TCATGA 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 200
BssMI GATC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 173, 192, 226
BstDEI CTNAG 2 cut(s) 84, 117
BstF5I GGATG 2 cut(s) 39, 44
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 175, 194
BstSFI CTRYAG 1 cut(s) 222
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 39, 44
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 173, 192, 226
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 53
CviAII CATG 4 cut(s) 34, 149, 172, 191
CviJI RGCY 3 cut(s) 73, 207, 228
CviKI_1 RGCY 3 cut(s) 73, 207, 228
DdeI CTNAG 2 cut(s) 84, 117
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 117
FaeI CATG 4 cut(s) 37, 152, 175, 194
FaiI YATR 7 cut(s) 35, 102, 113, 150, 173, 192, 242
FatI CATG 4 cut(s) 33, 148, 171, 190
FokI GGATG 2 cut(s) 26, 31
GlaI GCGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 73
HhaI GCGC 1 cut(s) 53
Hin1II CATG 4 cut(s) 37, 152, 175, 194
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 210
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 57, 238
Hpy188III TCNNGA 3 cut(s) 34, 119, 214
Hpy8I GTNNAC 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 171, 224, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 84, 117
Hsp92II CATG 4 cut(s) 37, 152, 175, 194
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 58, 205
LpnPI CCDG 5 cut(s) 33, 61, 62, 104, 210
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 104, 225
MhlI GDGCHC 1 cut(s) 62
MnlI CCTC 5 cut(s) 63, 79, 84, 126, 147
MslI CAYNNNNRTG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 1 cut(s) 94
NlaIII CATG 4 cut(s) 37, 152, 175, 194
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 2 cut(s) 175, 194
OliI CACNNNNGTG 1 cut(s) 65
PaeI GCATGC 2 cut(s) 175, 194
PagI TCATGA 1 cut(s) 33
PceI AGGCCT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 65
Sau3AI GATC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 22, 30, 169, 259
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 65
SphI GCATGC 2 cut(s) 175, 194
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 50, 137
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 88
XceI RCATGY 2 cut(s) 175, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.