Rh5BG389300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
62295036 .. 62296442
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG389300.1

Sequence Viewer

Length: 309 bp
ATGTCTACTATTGTTCTTTACATTGTTGTCATCATACATTCCTTACTATTGTTTTCTTGTTTTGATGTATCTATGGCTGCGAGGAACATACCATCCAGCGCTCCGAGCACAATGGTGAGGCCTCTGGTCACTGAGGGAGAAGATCGTTATGTGAGCATTATGCCTCAGGACTTGAAACACAAGCAACAAGTCTTTCATGGGAGGGAAGTCAAAGGTTGCATGCCGAAAGGGTTTAGGCATGCTTCCGCTCCAAGCCGGTTCGTGAACTCTGCAGGCTGTTCTTCCGATATGCACACCAAGAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.31

Weight (kDa)

9.45

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018402)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g31180
prunus_persica Prupe.6G107700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057831
rosa_laevigata RLG00000035181
rosa_roxburghii Rroxscaffold_1G00022670
rosa_rugosa Rorug05G0309900
rosa_samantha Rh5AG378100 Rh5BG389300 Rh5CG413600 Rh5DG404200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 246
AfeI AGCGCT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
Alw21I GWGCWC 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 123, 179
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 124, 178
BspMAI CTGCAG 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 221, 240, 274
BstDEI CTNAG 2 cut(s) 132, 165
BstF5I GGATG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 223, 242
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 221, 240, 274
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 255
CviAII CATG 3 cut(s) 197, 220, 239
CviJI RGCY 4 cut(s) 77, 121, 255, 276
CviKI_1 RGCY 4 cut(s) 77, 121, 255, 276
DdeI CTNAG 2 cut(s) 132, 165
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 121
Eco47III AGCGCT 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 165
FaeI CATG 3 cut(s) 200, 223, 242
FaiI YATR 9 cut(s) 35, 74, 89, 150, 161, 198, 221, 240, 290
FatI CATG 3 cut(s) 196, 219, 238
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 78
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 200, 223, 242
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 6, 265
Hpy188I TCNGA 2 cut(s) 105, 286
Hpy188III TCNNGA 2 cut(s) 167, 262
Hpy8I GTNNAC 2 cut(s) 6, 265
HpyCH4V TGCA 3 cut(s) 219, 272, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 132, 165
Hsp92II CATG 3 cut(s) 200, 223, 242
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 106, 253
LpnPI CCDG 5 cut(s) 109, 110, 152, 258, 269
Lsp1109I GCAGC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 248
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 152, 273
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 6 cut(s) 75, 111, 127, 132, 174, 195
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 200, 223, 242
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 223, 242
OliI CACNNNNGTG 1 cut(s) 113
PaeI GCATGC 2 cut(s) 223, 242
PceI AGGCCT 1 cut(s) 121
PkrI GCNGC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 217, 307
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 113
SphI GCATGC 2 cut(s) 223, 242
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 121
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 136
XceI RCATGY 2 cut(s) 223, 242
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.