Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0020123

Physical Location & Seq

Genomic Coordinates Reverse (-)

9208004 .. 9209179

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G123500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGGGTGTTGATGTTGATTGTCCTGTTTCCCACTTCTTCAAACATGGCTGGTGGGATGTGGATAAGCTTCGCAATTTTCTTGCTGAGGATACAGTTCAGAAAATTACTTCTTTGGCTGTTGACTTTGATGGGAGGTTAGAAGATATTCGTATTTGGAAATATACTGATAATGGGAGTTTTACTGTGAAATCCGCTTATAATTTGTTGTTTAAAAGGCCTGATTGGCCTGACCCTTGGTGGAAAGTCCCATGGCAGATGCGAATTCATCCTAAATTGCAAATTTTCTGTTGGTTGGTGTATCAGGGGAAAATCCTCTCCAATGAGCAACGCGTGGGAACACACCTTACCTTTGATTCATCTTGCCAATGTTGTGGTTGGCCCATTGAACCTAGGGGTGATGCTGCGAGGTTTTTCCAGGCTAACTTTAAAGCTTGGCTTGTTAGTAATTTATGTTCTAAGTCTGTATATGACCTTCAACCTTGGCTGTTTATTTGGAAATGGAGAAACAGTAGAGTTTTTAATGTTGAAGCTGAGTTGCCTTTTCACCCTAAAAGGATTATTGCTTCTGCAGTTTCTGAGTGGCTCCAAACTTGTCCTAATTCCATCTCCAAAAGGACTCAAGTGCAGATTATGTTGGCTTGGGAGCCCCCTATGAATGGTGTGTTCAAGTTAAATGTTGATGGCTCTCGCAAGGGTGGTATTGGTTGTATTGGTGCTGGTGGTATCATCCGTGATTCCTTTGGGGACTGGATGGGTGGTTTTGCTGTCAACTTGGGTATTGGTCAAACTCTGGATGATGAGCTCTGGGGGTTATTCTTTGGCTTGAAGCTTGTTGCGGCTAAAGGGGTGGCTAGGCTTTCTATTGAAATGGATTCTATGACTGATGTTCAGCTTATCAAGCAGCATGTTCCTAGTTGTCTTCATCCTTGTACTGGGGTGATTGCAAGTTGTGTTGCTTTGATAAGTAAGTTTGAGTTTGTTGAGCTTACTCATGTTTATAGGGAAAGGAATGCTGCTGCAGATTGCTTAGCTAATTGGAGTCTGAATATGGATCTGGGGGGCTGCTTTTTTTATGAAGCTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3

Protein Analysis

364

Amino Acids

41.39

Weight (kDa)

6.7

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21311
prunus_persica	Prupe.3G010000_v2.0.a1 Prupe.4G174500_v2.0.a1 Prupe.6G123500_v2.0.a1
pyrus_communis	pycom10g09650
rosa_rugosa	Rorug02G0245200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	195, 839
AclWI	GGATC	1 cut(s)	1062
AcsI	RAATTY	2 cut(s)	264, 282
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	2 cut(s)	659, 935
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	7 cut(s)	43, 389, 479, 530, 670, 829, 869
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	9 cut(s)	70, 434, 533, 805, 832, 895, 988, 1034, 1082
AluI	AGCT	9 cut(s)	70, 434, 533, 805, 832, 895, 988, 1034, 1082
Alw21I	GWGCWC	1 cut(s)	807
AlwI	GGATC	1 cut(s)	1062
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	218, 227, 380
ApeKI	GCWGC	5 cut(s)	404, 904, 1016, 1019, 1065
ApoI	RAATTY	2 cut(s)	264, 282
Asp700I	GAANNNNTTC	1 cut(s)	147
AspA2I	CCTAGG	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	410, 539, 952
AvrII	CCTAGG	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	651, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	391, 916, 1003, 1006, 1052
BccI	CCATC	4 cut(s)	125, 614, 677, 748
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	85
BfaI	CTAG	3 cut(s)	393, 855, 915
BfmI	CTRYAG	2 cut(s)	570, 1020
BfuI	GTATCC	1 cut(s)	85
BglI	GCCNNNNNGGC	1 cut(s)	226
BisI	GCNGC	6 cut(s)	405, 840, 905, 1017, 1020, 1066
BlnI	CCTAGG	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	1030
BlsI	GCNGC	6 cut(s)	406, 841, 906, 1018, 1021, 1067
Bme1390I	CCNGG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	587, 648
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	249, 391
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	914
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	1030
BpuEI	CTTGAG	1 cut(s)	606
BsaJI	CCNNGG	4 cut(s)	236, 251, 392, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 935
Bse1I	ACTGG	2 cut(s)	755, 940
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	4 cut(s)	236, 251, 392, 482
BseGI	GGATG	6 cut(s)	64, 268, 729, 759, 802, 925
BseLI	CCNNNNNNNGG	2 cut(s)	659, 935
BseMII	CTCAG	3 cut(s)	78, 525, 570
BseNI	ACTGG	2 cut(s)	755, 940
BseXI	GCAGC	5 cut(s)	391, 916, 1003, 1006, 1052
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	220, 229, 382
BsiHKAI	GWGCWC	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	233, 761
BslI	CCNNNNNNNGG	2 cut(s)	659, 935
BsmFI	GGGAC	2 cut(s)	233, 761
BsmI	GAATGC	1 cut(s)	1018
BsnI	GGCC	3 cut(s)	220, 229, 382
Bsp1286I	GDGCHC	2 cut(s)	651, 807
Bsp143I	GATC	1 cut(s)	1054
Bsp1720I	GCTNAGC	1 cut(s)	1030
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	2 cut(s)	195, 839
BspANI	GGCC	3 cut(s)	220, 229, 382
BspCNI	CTCAG	3 cut(s)	79, 526, 571
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	587, 648
BspMAI	CTGCAG	2 cut(s)	574, 1024
BspPI	GGATC	1 cut(s)	1062
BsrI	ACTGG	2 cut(s)	755, 940
BssECI	CCNNGG	4 cut(s)	236, 251, 392, 482
BssMI	GATC	1 cut(s)	1054
BssT1I	CCWWGG	4 cut(s)	236, 251, 392, 482
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	97, 187, 512
BstDEI	CTNAG	5 cut(s)	87, 459, 534, 579, 1030
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	6 cut(s)	64, 268, 729, 759, 802, 925
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	1057
BstMBI	GATC	1 cut(s)	1054
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 901
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	2 cut(s)	570, 1020
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	5 cut(s)	391, 916, 1003, 1006, 1052
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	1054
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	220, 229, 382
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	6 cut(s)	64, 268, 729, 759, 802, 925
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	933
CviAII	CATG	4 cut(s)	47, 252, 908, 995
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	5 cut(s)	87, 459, 534, 579, 1030
DpnI	GATC	1 cut(s)	1056
DpnII	GATC	1 cut(s)	1054
DraI	TTTAAA	2 cut(s)	214, 430
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	4 cut(s)	236, 251, 392, 482
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	651, 807
Eco53kI	GAGCTC	1 cut(s)	805
EcoICRI	GAGCTC	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	4 cut(s)	236, 251, 392, 482
EcoT38I	GRGCYC	2 cut(s)	651, 807
ErhI	CCWWGG	4 cut(s)	236, 251, 392, 482
FaeI	CATG	4 cut(s)	50, 255, 911, 998
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	233, 761
FatI	CATG	4 cut(s)	46, 251, 907, 994
Fnu4HI	GCNGC	6 cut(s)	405, 840, 905, 1017, 1020, 1066
FokI	GGATG	6 cut(s)	71, 255, 716, 766, 809, 912
FriOI	GRGCYC	2 cut(s)	651, 807
Fsp4HI	GCNGC	6 cut(s)	405, 840, 905, 1017, 1020, 1066
FspBI	CTAG	3 cut(s)	393, 855, 915
GluI	GCNGC	6 cut(s)	405, 840, 905, 1017, 1020, 1066
HaeIII	GGCC	3 cut(s)	220, 229, 382
Hin1II	CATG	4 cut(s)	50, 255, 911, 998
HincII	GTYRAC	2 cut(s)	124, 772
HindII	GTYRAC	2 cut(s)	124, 772
HindIII	AAGCTT	3 cut(s)	68, 432, 830
HinfI	GANTC	5 cut(s)	356, 619, 737, 875, 1042
HphI	GGTGA	3 cut(s)	410, 539, 952
Hpy166II	GTNNAC	2 cut(s)	124, 772
Hpy188I	TCNGA	3 cut(s)	102, 580, 1047
Hpy188III	TCNNGA	1 cut(s)	794
Hpy8I	GTNNAC	2 cut(s)	124, 772
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	3 cut(s)	97, 187, 512
HpyCH4V	TGCA	5 cut(s)	280, 572, 628, 947, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 901
HpyF3I	CTNAG	5 cut(s)	87, 459, 534, 579, 1030
Hsp92II	CATG	4 cut(s)	50, 255, 911, 998
Kzo9I	GATC	1 cut(s)	1054
LmnI	GCTCC	3 cut(s)	591, 646, 1087
Lsp1109I	GCAGC	5 cut(s)	391, 916, 1003, 1006, 1052
LweI	GCATC	2 cut(s)	249, 391
MaeI	CTAG	3 cut(s)	393, 855, 915
MalI	GATC	1 cut(s)	1056
MboI	GATC	1 cut(s)	1054
MboII	GAAGA	3 cut(s)	31, 155, 914
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	2 cut(s)	651, 807
MluCI	AATT	9 cut(s)	76, 105, 202, 264, 275, 282, 448, 601, 1036
MluI	ACGCGT	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	613, 1051
MnlI	CCTC	4 cut(s)	82, 129, 326, 402
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	4 cut(s)	213, 429, 522, 674
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	1018
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	226, 901
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	1054
NlaIII	CATG	4 cut(s)	50, 255, 911, 998
NlaIV	GGNNCC	2 cut(s)	587, 648
NspI	RCATGY	1 cut(s)	911
PceI	AGGCCT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	1018
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	356, 737, 875
PkrI	GCNGC	6 cut(s)	406, 841, 906, 1018, 1021, 1067
PleI	GAGTC	2 cut(s)	613, 1050
PpsI	GAGTC	2 cut(s)	613, 1050
PsiI	TTATAA	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	587, 648
PspPI	GGNCC	1 cut(s)	381
PsrI	GAACNNNNNNTAC	4 cut(s)	331, 363, 439, 471
PstI	CTGCAG	2 cut(s)	574, 1024
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	1054
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	4 cut(s)	213, 429, 522, 674
SatI	GCNGC	6 cut(s)	405, 840, 905, 1017, 1020, 1066
Sau3AI	GATC	1 cut(s)	1054
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	2 cut(s)	613, 1051
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	651, 807
SfaNI	GCATC	2 cut(s)	249, 391
SfcI	CTRYAG	2 cut(s)	570, 1020
SfiI	GGCCNNNNNGGCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	9 cut(s)	76, 105, 202, 264, 275, 282, 448, 601, 1036
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	195, 839
SspMI	CTAG	3 cut(s)	393, 855, 915
SstI	GAGCTC	1 cut(s)	807
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	4 cut(s)	236, 251, 392, 482
TaaI	ACNGT	3 cut(s)	97, 187, 512
TasI	AATT	9 cut(s)	76, 105, 202, 264, 275, 282, 448, 601, 1036
TatI	WGTACW	1 cut(s)	932
TauI	GCSGC	1 cut(s)	842
TfiI	GAWTC	3 cut(s)	356, 737, 875
Tru1I	TTAA	4 cut(s)	213, 429, 522, 674
Tru9I	TTAA	4 cut(s)	213, 429, 522, 674
TseI	GCWGC	5 cut(s)	404, 904, 1016, 1019, 1065
TspDTI	ATGAA	5 cut(s)	257, 348, 671, 914, 1092
TspGWI	ACGGA	1 cut(s)	722
XapI	RAATTY	2 cut(s)	264, 282
XceI	RCATGY	1 cut(s)	911
XmaJI	CCTAGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	3 cut(s)	393, 855, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.