DNA-directed RNA polymerases
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1023800.v1.1 MD15G1329500.v1.1 |
| prunus_persica | Prupe.6G178800_v2.0.a1 |
| pyrus_communis | pycom01g05140 pycom15g29600 |
| rosa_chinensis | RchiOBHm_Chr2g0115551 |
| rosa_laevigata | RLG00000018193 |
| rosa_multiflora | Rmu_ssc0000197.1_g000090 |
| rosa_roxburghii | Rroxscaffold_2G00128110 |
| rosa_rugosa | Rorug02G0197900 Rorug02G0198000 |
| rosa_samantha | Rh2AG255200 Rh2BG265900 Rh2CG260400 Rh2DG263400 |
| rosa_wichuraiana | Rw2G019980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 201 |
| AciI | CCGC | 1 cut(s) | 201 |
| AclWI | GGATC | 3 cut(s) | 41, 54, 383 |
| AcsI | RAATTY | 2 cut(s) | 62, 164 |
| AcuI | CTGAAG | 1 cut(s) | 353 |
| AdeI | CACNNNGTG | 1 cut(s) | 95 |
| AfaI | GTAC | 1 cut(s) | 403 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 215 |
| AflIII | ACRYGT | 1 cut(s) | 426 |
| AgsI | TTSAA | 1 cut(s) | 324 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| AlwI | GGATC | 3 cut(s) | 41, 54, 383 |
| ApoI | RAATTY | 2 cut(s) | 62, 164 |
| BamHI | GGATCC | 1 cut(s) | 46 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BccI | CCATC | 2 cut(s) | 47, 166 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmsI | GCATC | 2 cut(s) | 138, 366 |
| BpmI | CTGGAG | 1 cut(s) | 217 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 195, 225 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 215 |
| Bse1I | ACTGG | 1 cut(s) | 200 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BseNI | ACTGG | 1 cut(s) | 200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BslFI | GGGAC | 1 cut(s) | 240 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 208 |
| Bsp143I | GATC | 3 cut(s) | 46, 388, 418 |
| BspACI | CCGC | 1 cut(s) | 201 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspPI | GGATC | 3 cut(s) | 41, 54, 383 |
| BsrBI | CCGCTC | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 200 |
| BssMI | GATC | 3 cut(s) | 46, 388, 418 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 212, 280 |
| BstDEI | CTNAG | 1 cut(s) | 405 |
| BstKTI | GATC | 3 cut(s) | 49, 391, 421 |
| BstMBI | GATC | 3 cut(s) | 46, 388, 418 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 212, 280 |
| BstNSI | RCATGY | 1 cut(s) | 430 |
| BstX2I | RGATCY | 2 cut(s) | 46, 388 |
| BstYI | RGATCY | 2 cut(s) | 46, 388 |
| BtsIMutI | CAGTG | 1 cut(s) | 113 |
| Csp6I | GTAC | 1 cut(s) | 402 |
| CviAII | CATG | 3 cut(s) | 152, 275, 427 |
| CviJI | RGCY | 1 cut(s) | 367 |
| CviKI_1 | RGCY | 1 cut(s) | 367 |
| CviQI | GTAC | 1 cut(s) | 402 |
| DdeI | CTNAG | 1 cut(s) | 405 |
| DpnI | GATC | 3 cut(s) | 48, 390, 420 |
| DpnII | GATC | 3 cut(s) | 46, 388, 418 |
| DraIII | CACNNNGTG | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 1 cut(s) | 353 |
| EcoT22I | ATGCAT | 2 cut(s) | 153, 276 |
| FaeI | CATG | 3 cut(s) | 155, 278, 430 |
| FaqI | GGGAC | 1 cut(s) | 240 |
| FatI | CATG | 3 cut(s) | 151, 274, 426 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GsuI | CTGGAG | 1 cut(s) | 217 |
| Hin1II | CATG | 3 cut(s) | 155, 278, 430 |
| HincII | GTYRAC | 1 cut(s) | 297 |
| HindII | GTYRAC | 1 cut(s) | 297 |
| Hpy166II | GTNNAC | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 4 cut(s) | 147, 316, 372, 423 |
| Hpy188III | TCNNGA | 4 cut(s) | 50, 78, 169, 442 |
| Hpy8I | GTNNAC | 1 cut(s) | 297 |
| HpyAV | CCTTC | 2 cut(s) | 151, 323 |
| HpyCH4V | TGCA | 3 cut(s) | 151, 251, 274 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 212, 280 |
| HpyF3I | CTNAG | 1 cut(s) | 405 |
| Hsp92II | CATG | 3 cut(s) | 155, 278, 430 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 3 cut(s) | 46, 388, 418 |
| LmnI | GCTCC | 2 cut(s) | 198, 203 |
| LpnPI | CCDG | 7 cut(s) | 63, 181, 201, 209, 215, 222, 427 |
| LweI | GCATC | 2 cut(s) | 138, 366 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeIII | GTNAC | 1 cut(s) | 111 |
| MalI | GATC | 3 cut(s) | 48, 390, 420 |
| MbiI | CCGCTC | 1 cut(s) | 201 |
| MboI | GATC | 3 cut(s) | 46, 388, 418 |
| MfeI | CAATTG | 1 cut(s) | 397 |
| MflI | RGATCY | 2 cut(s) | 46, 388 |
| MhlI | GDGCHC | 1 cut(s) | 208 |
| MluCI | AATT | 5 cut(s) | 62, 81, 164, 397, 446 |
| MmeI | TCCRAC | 1 cut(s) | 416 |
| MnlI | CCTC | 2 cut(s) | 23, 337 |
| Mph1103I | ATGCAT | 2 cut(s) | 153, 276 |
| MseI | TTAA | 2 cut(s) | 192, 411 |
| MunI | CAATTG | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 212, 280 |
| NdeII | GATC | 3 cut(s) | 46, 388, 418 |
| NlaIII | CATG | 3 cut(s) | 155, 278, 430 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| NmuCI | GTSAC | 1 cut(s) | 111 |
| NsiI | ATGCAT | 2 cut(s) | 153, 276 |
| NspI | RCATGY | 1 cut(s) | 430 |
| PciI | ACATGT | 1 cut(s) | 426 |
| PscI | ACATGT | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PsuI | RGATCY | 2 cut(s) | 46, 388 |
| RsaI | GTAC | 1 cut(s) | 403 |
| RsaNI | GTAC | 1 cut(s) | 402 |
| SaqAI | TTAA | 2 cut(s) | 192, 411 |
| Sau3AI | GATC | 3 cut(s) | 46, 388, 418 |
| SduI | GDGCHC | 1 cut(s) | 208 |
| SetI | ASST | 4 cut(s) | 211, 234, 334, 348 |
| SfaNI | GCATC | 2 cut(s) | 138, 366 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 5 cut(s) | 62, 81, 164, 397, 446 |
| SsiI | CCGC | 1 cut(s) | 201 |
| SspMI | CTAG | 1 cut(s) | 122 |
| TasI | AATT | 5 cut(s) | 62, 81, 164, 397, 446 |
| TatI | WGTACW | 1 cut(s) | 401 |
| Tru1I | TTAA | 2 cut(s) | 192, 411 |
| Tru9I | TTAA | 2 cut(s) | 192, 411 |
| TscAI | CASTG | 1 cut(s) | 120 |
| TseFI | GTSAC | 1 cut(s) | 111 |
| Tsp45I | GTSAC | 1 cut(s) | 111 |
| TspDTI | ATGAA | 1 cut(s) | 345 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| TspRI | CASTG | 1 cut(s) | 120 |
| XapI | RAATTY | 2 cut(s) | 62, 164 |
| XceI | RCATGY | 1 cut(s) | 430 |
| XspI | CTAG | 1 cut(s) | 122 |
| Zsp2I | ATGCAT | 2 cut(s) | 153, 276 |