DNA-directed RNA polymerases
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1023800.v1.1 MD15G1329500.v1.1 |
| prunus_persica | Prupe.6G178800_v2.0.a1 |
| pyrus_communis | pycom01g05140 pycom15g29600 |
| rosa_chinensis | RchiOBHm_Chr2g0115551 |
| rosa_laevigata | RLG00000018193 |
| rosa_multiflora | Rmu_ssc0000197.1_g000090 |
| rosa_roxburghii | Rroxscaffold_2G00128110 |
| rosa_rugosa | Rorug02G0197900 Rorug02G0198000 |
| rosa_samantha | Rh2AG255200 Rh2BG265900 Rh2CG260400 Rh2DG263400 |
| rosa_wichuraiana | Rw2G019980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 82 |
| AcuI | CTGAAG | 1 cut(s) | 47 |
| AluBI | AGCT | 3 cut(s) | 13, 70, 113 |
| AluI | AGCT | 3 cut(s) | 13, 70, 113 |
| AlwI | GGATC | 1 cut(s) | 82 |
| ApeKI | GCWGC | 1 cut(s) | 67 |
| BbvI | GCAGC | 1 cut(s) | 79 |
| BccI | CCATC | 1 cut(s) | 136 |
| BfaI | CTAG | 1 cut(s) | 185 |
| BfmI | CTRYAG | 1 cut(s) | 203 |
| BisI | GCNGC | 1 cut(s) | 68 |
| BlsI | GCNGC | 1 cut(s) | 69 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 99, 131 |
| BseXI | GCAGC | 1 cut(s) | 79 |
| BsiSI | CCGG | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 87 |
| BspMAI | CTGCAG | 1 cut(s) | 207 |
| BspPI | GGATC | 1 cut(s) | 82 |
| BssMI | GATC | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 104 |
| BstKTI | GATC | 1 cut(s) | 90 |
| BstMBI | GATC | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstSFI | CTRYAG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 79 |
| BtsI | GCAGTG | 1 cut(s) | 25 |
| BtsIMutI | CAGTG | 1 cut(s) | 25 |
| CviAII | CATG | 4 cut(s) | 31, 92, 146, 224 |
| CviJI | RGCY | 4 cut(s) | 13, 70, 113, 188 |
| CviKI_1 | RGCY | 4 cut(s) | 13, 70, 113, 188 |
| DpnI | GATC | 1 cut(s) | 89 |
| DpnII | GATC | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 1 cut(s) | 47 |
| FaeI | CATG | 4 cut(s) | 34, 95, 149, 227 |
| FaiI | YATR | 6 cut(s) | 32, 93, 125, 141, 147, 225 |
| FatI | CATG | 4 cut(s) | 30, 91, 145, 223 |
| Fnu4HI | GCNGC | 1 cut(s) | 68 |
| Fsp4HI | GCNGC | 1 cut(s) | 68 |
| FspBI | CTAG | 1 cut(s) | 185 |
| GluI | GCNGC | 1 cut(s) | 68 |
| HapII | CCGG | 1 cut(s) | 189 |
| Hin1II | CATG | 4 cut(s) | 34, 95, 149, 227 |
| HpaII | CCGG | 1 cut(s) | 189 |
| Hpy166II | GTNNAC | 1 cut(s) | 212 |
| Hpy188I | TCNGA | 1 cut(s) | 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 212 |
| HpyAV | CCTTC | 1 cut(s) | 155 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 104 |
| HpyCH4V | TGCA | 3 cut(s) | 30, 197, 205 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| Hsp92II | CATG | 4 cut(s) | 34, 95, 149, 227 |
| Kzo9I | GATC | 1 cut(s) | 87 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 2 cut(s) | 191, 202 |
| Lsp1109I | GCAGC | 1 cut(s) | 79 |
| MaeI | CTAG | 1 cut(s) | 185 |
| MalI | GATC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 87 |
| MluCI | AATT | 4 cut(s) | 41, 153, 171, 215 |
| MnlI | CCTC | 2 cut(s) | 40, 151 |
| MseI | TTAA | 1 cut(s) | 170 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 144 |
| MspI | CCGG | 1 cut(s) | 189 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NdeII | GATC | 1 cut(s) | 87 |
| NlaIII | CATG | 4 cut(s) | 34, 95, 149, 227 |
| PkrI | GCNGC | 1 cut(s) | 69 |
| PstI | CTGCAG | 1 cut(s) | 207 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 144 |
| SaqAI | TTAA | 1 cut(s) | 170 |
| SatI | GCNGC | 1 cut(s) | 68 |
| Sau3AI | GATC | 1 cut(s) | 87 |
| SetI | ASST | 3 cut(s) | 15, 72, 115 |
| SfcI | CTRYAG | 1 cut(s) | 203 |
| SgeI | CNNG | 7 cut(s) | 43, 104, 119, 158, 197, 201, 218 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 144 |
| Sse9I | AATT | 4 cut(s) | 41, 153, 171, 215 |
| SspMI | CTAG | 1 cut(s) | 185 |
| TaaI | ACNGT | 2 cut(s) | 37, 104 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TasI | AATT | 4 cut(s) | 41, 153, 171, 215 |
| Tru1I | TTAA | 1 cut(s) | 170 |
| Tru9I | TTAA | 1 cut(s) | 170 |
| TscAI | CASTG | 1 cut(s) | 32 |
| TseI | GCWGC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 2 cut(s) | 108, 212 |
| TspRI | CASTG | 1 cut(s) | 32 |
| XspI | CTAG | 1 cut(s) | 185 |