DNA-directed RNA polymerases
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1023800.v1.1 MD15G1329500.v1.1 |
| prunus_persica | Prupe.6G178800_v2.0.a1 |
| pyrus_communis | pycom01g05140 pycom15g29600 |
| rosa_chinensis | RchiOBHm_Chr2g0115551 |
| rosa_laevigata | RLG00000018193 |
| rosa_multiflora | Rmu_ssc0000197.1_g000090 |
| rosa_roxburghii | Rroxscaffold_2G00128110 |
| rosa_rugosa | Rorug02G0197900 Rorug02G0198000 |
| rosa_samantha | Rh2AG255200 Rh2BG265900 Rh2CG260400 Rh2DG263400 |
| rosa_wichuraiana | Rw2G019980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 146 |
| AccBSI | CCGCTC | 1 cut(s) | 54 |
| AciI | CCGC | 1 cut(s) | 54 |
| AcsI | RAATTY | 2 cut(s) | 17, 110 |
| AcuI | CTGAAG | 2 cut(s) | 174, 233 |
| AfaI | GTAC | 1 cut(s) | 286 |
| AgsI | TTSAA | 3 cut(s) | 116, 171, 204 |
| AleI | CACNNNNGTG | 1 cut(s) | 46 |
| Alw26I | GTCTC | 1 cut(s) | 39 |
| ApoI | RAATTY | 2 cut(s) | 17, 110 |
| BccI | CCATC | 1 cut(s) | 19 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 39 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfuAI | ACCTGC | 1 cut(s) | 146 |
| BmsI | GCATC | 1 cut(s) | 246 |
| BoxI | GACNNNNGTC | 1 cut(s) | 212 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| Bsa29I | ATCGAT | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseCI | ATCGAT | 1 cut(s) | 271 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BshVI | ATCGAT | 1 cut(s) | 271 |
| BsmAI | GTCTC | 1 cut(s) | 39 |
| Bsp143I | GATC | 3 cut(s) | 268, 272, 301 |
| BspACI | CCGC | 1 cut(s) | 54 |
| BspDI | ATCGAT | 1 cut(s) | 271 |
| BspMAI | CTGCAG | 1 cut(s) | 157 |
| BspMI | ACCTGC | 1 cut(s) | 146 |
| BsrBI | CCGCTC | 1 cut(s) | 54 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssMI | GATC | 3 cut(s) | 268, 272, 301 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstKTI | GATC | 3 cut(s) | 271, 275, 304 |
| BstMAI | GTCTC | 1 cut(s) | 39 |
| BstMBI | GATC | 3 cut(s) | 268, 272, 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 133 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 212 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| Bsu15I | ATCGAT | 1 cut(s) | 271 |
| BsuTUI | ATCGAT | 1 cut(s) | 271 |
| BveI | ACCTGC | 1 cut(s) | 146 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| ClaI | ATCGAT | 1 cut(s) | 271 |
| Csp6I | GTAC | 1 cut(s) | 285 |
| CviAII | CATG | 1 cut(s) | 128 |
| CviJI | RGCY | 2 cut(s) | 188, 247 |
| CviKI_1 | RGCY | 2 cut(s) | 188, 247 |
| CviQI | GTAC | 1 cut(s) | 285 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DpnI | GATC | 3 cut(s) | 270, 274, 303 |
| DpnII | GATC | 3 cut(s) | 268, 272, 301 |
| Eco57I | CTGAAG | 2 cut(s) | 174, 233 |
| EcoT22I | ATGCAT | 1 cut(s) | 129 |
| FaeI | CATG | 1 cut(s) | 131 |
| FaiI | YATR | 6 cut(s) | 120, 129, 141, 229, 231, 337 |
| FatI | CATG | 1 cut(s) | 127 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| Hin1II | CATG | 1 cut(s) | 131 |
| HincII | GTYRAC | 1 cut(s) | 150 |
| HindII | GTYRAC | 1 cut(s) | 150 |
| HinfI | GANTC | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 3 cut(s) | 80, 150, 294 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 193, 252, 306 |
| Hpy188III | TCNNGA | 2 cut(s) | 22, 325 |
| Hpy8I | GTNNAC | 3 cut(s) | 80, 150, 294 |
| HpyAV | CCTTC | 2 cut(s) | 178, 191 |
| HpyCH4IV | ACGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 127, 155 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 133 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| HpySE526I | ACGT | 1 cut(s) | 76 |
| Hsp92II | CATG | 1 cut(s) | 131 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 3 cut(s) | 268, 272, 301 |
| LmnI | GCTCC | 2 cut(s) | 51, 56 |
| LpnPI | CCDG | 4 cut(s) | 54, 68, 141, 310 |
| LweI | GCATC | 1 cut(s) | 246 |
| MaeII | ACGT | 1 cut(s) | 76 |
| MalI | GATC | 3 cut(s) | 270, 274, 303 |
| MbiI | CCGCTC | 1 cut(s) | 54 |
| MboI | GATC | 3 cut(s) | 268, 272, 301 |
| MboII | GAAGA | 2 cut(s) | 159, 267 |
| MluCI | AATT | 3 cut(s) | 17, 110, 329 |
| MnlI | CCTC | 1 cut(s) | 217 |
| Mph1103I | ATGCAT | 1 cut(s) | 129 |
| MslI | CAYNNNNRTG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 133 |
| NdeII | GATC | 3 cut(s) | 268, 272, 301 |
| NlaIII | CATG | 1 cut(s) | 131 |
| NsiI | ATGCAT | 1 cut(s) | 129 |
| OliI | CACNNNNGTG | 1 cut(s) | 46 |
| PfeI | GAWTC | 1 cut(s) | 164 |
| PshAI | GACNNNNGTC | 1 cut(s) | 212 |
| PstI | CTGCAG | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 286 |
| RsaNI | GTAC | 1 cut(s) | 285 |
| RseI | CAYNNNNRTG | 1 cut(s) | 46 |
| Sau3AI | GATC | 3 cut(s) | 268, 272, 301 |
| SetI | ASST | 5 cut(s) | 79, 87, 160, 202, 228 |
| SfaNI | GCATC | 1 cut(s) | 246 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 46 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 3 cut(s) | 17, 110, 329 |
| SsiI | CCGC | 1 cut(s) | 54 |
| TaiI | ACGT | 1 cut(s) | 79 |
| TaqI | TCGA | 2 cut(s) | 271, 278 |
| TasI | AATT | 3 cut(s) | 17, 110, 329 |
| TatI | WGTACW | 1 cut(s) | 284 |
| TfiI | GAWTC | 1 cut(s) | 164 |
| TspDTI | ATGAA | 2 cut(s) | 210, 225 |
| XapI | RAATTY | 2 cut(s) | 17, 110 |
| Zsp2I | ATGCAT | 1 cut(s) | 129 |