Prupe.6G194000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015521
Physical Location & Seq
Reverse (-)
20120419 .. 20121787
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G194000.2

Sequence Viewer

Length: 654 bp
ATGGCAACCATCAATGGCTTCCACCCTCCCATGTCCACCCTCCATAGCCAAAAAACAAAGCTCCAAGTCCCCCATGCCACTTTGCATAGCCTGCCTTTGACTTCTGATCAGCAGCATCCCATGTTGGCTTATCAAAGATCATCATTCACCAAATTCCCATATGATCATCAATTGATCAGAGCTCATCACAGACTGCTAATTACCAAGGTGACTCAGGCATCAGAAAAATCTCCACCAGAAACTCAAAATCCTGCAGATAAATCTCCATTATCTACTTGGAAAAACTGGATTGTGGGATTAATGCTGTCAATAATAATACCTTCTTTGAGACACAAATGGGGACCCTTGCTGGCCCTTAAAAGCAAGGTGGACATGGCAGTAGACACAGTGGAATCTGTGACAGAGGTGGTGGAAGAGTTGGCTGAGGAAGTAGAGAAGGTGGCTGAGCAGGTAGAAGACAAGCTTCCTGAGGATGCTAAGCTCAGAGAAGCTGTGGAGTCCGTTGAACATCTAGCTGAAGATGCAGTCAAAAAGGCTGAGCTAGCCAAGGATGTCATCCACAAGGTAGAGGAAGTGGAGGAAGAGGTTGAGAAGGCACTAACTAATGGGTCAGATGTTGATTCTGTAAAAGGGGAGGGTGAGAAGAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.26

Weight (kDa)

5.57

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20190
malus_domestica MD15G1317800.v1.1
prunus_persica Prupe.6G194000_v2.0.a1 Prupe.6G194000_v2.0.a1
pyrus_communis pycom15g28040
rosa_chinensis RchiOBHm_Chr2g0112261
rosa_laevigata RLG00000017966
rosa_multiflora Rmu_sc0004467.1_g000024 Rmu_sc0011951.1_g000002
rosa_roxburghii Rroxscaffold_2G00131580
rosa_rugosa Rorug02G0179600
rosa_samantha Rh2AG232100 Rh2BG245400 Rh2CG236300 Rh2DG239800
rosa_wichuraiana Rw2G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 537
AgsI TTSAA 1 cut(s) 506
AluBI AGCT 7 cut(s) 61, 182, 463, 481, 491, 515, 541
AluI AGCT 7 cut(s) 61, 182, 463, 481, 491, 515, 541
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 322
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 152
AseI ATTAAT 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 341, 352
AsuHPI GGTGA 3 cut(s) 139, 220, 650
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 468
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 17
BclI TGATCA 3 cut(s) 106, 163, 174
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 512, 542
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 1 cut(s) 113
BlpI GCTNAGC 3 cut(s) 444, 477, 537
BlsI GCNGC 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 341, 352
BmiI GGNNCC 2 cut(s) 342, 343
BmsI GCATC 4 cut(s) 124, 227, 463, 511
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 3 cut(s) 444, 477, 537
BsaJI CCNNGG 2 cut(s) 204, 546
Bse1I ACTGG 1 cut(s) 290
Bse21I CCTNAGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 204, 546
BseGI GGATG 4 cut(s) 115, 478, 555, 556
BseMII CTCAG 6 cut(s) 227, 414, 435, 459, 496, 528
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 124
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 184
BslFI GGGAC 2 cut(s) 53, 354
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 53, 354
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 4 cut(s) 106, 137, 163, 174
Bsp1720I GCTNAGC 3 cut(s) 444, 477, 537
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 6 cut(s) 226, 415, 436, 460, 495, 529
BspLI GGNNCC 2 cut(s) 342, 343
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 545
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 204, 546
BssMI GATC 4 cut(s) 106, 137, 163, 174
BssT1I CCWWGG 2 cut(s) 204, 546
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 408, 576
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 92, 351, 543
BstDEI CTNAG 7 cut(s) 213, 423, 444, 468, 477, 482, 537
BstF5I GGATG 4 cut(s) 115, 478, 555, 556
BstKTI GATC 4 cut(s) 109, 140, 166, 177
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 4 cut(s) 106, 137, 163, 174
BstMWI GCNNNNNNNGC 3 cut(s) 91, 521, 542
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 462
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 4 cut(s) 115, 478, 555, 556
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 92, 351, 543
Cfr13I GGNCC 2 cut(s) 341, 352
CviAII CATG 4 cut(s) 31, 74, 121, 373
DdeI CTNAG 7 cut(s) 213, 423, 444, 468, 477, 482, 537
DpnI GATC 4 cut(s) 108, 139, 165, 176
DpnII GATC 4 cut(s) 106, 137, 163, 174
Eam1104I CTCTTC 2 cut(s) 408, 576
EarI CTCTTC 2 cut(s) 408, 576
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 204, 546
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 537
Eco81I CCTNAGG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 204, 546
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 204, 546
FaeI CATG 4 cut(s) 34, 77, 124, 376
FaiI YATR 8 cut(s) 32, 45, 75, 87, 122, 160, 162, 374
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 2 cut(s) 53, 354
FatI CATG 4 cut(s) 30, 73, 120, 372
FauNDI CATATG 1 cut(s) 160
FbaI TGATCA 3 cut(s) 106, 163, 174
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 4 cut(s) 102, 485, 542, 563
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 2 cut(s) 512, 542
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 353
Hin1II CATG 4 cut(s) 34, 77, 124, 376
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 4 cut(s) 211, 392, 497, 620
HphI GGTGA 3 cut(s) 139, 220, 650
Hpy166II GTNNAC 3 cut(s) 36, 370, 382
Hpy188I TCNGA 5 cut(s) 106, 179, 223, 485, 613
Hpy188III TCNNGA 2 cut(s) 467, 651
Hpy8I GTNNAC 3 cut(s) 36, 370, 382
HpyAV CCTTC 3 cut(s) 330, 430, 586
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 85, 254, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 521, 542
HpyF3I CTNAG 7 cut(s) 213, 423, 444, 468, 477, 482, 537
Hsp92II CATG 4 cut(s) 34, 77, 124, 376
KflI GGGWCCC 1 cut(s) 341
Ksp22I TGATCA 3 cut(s) 106, 163, 174
Kzo9I GATC 4 cut(s) 106, 137, 163, 174
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 8 cut(s) 104, 200, 249, 264, 271, 335, 434, 480
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 4 cut(s) 124, 227, 463, 511
MaeI CTAG 2 cut(s) 512, 542
MaeIII GTNAC 2 cut(s) 208, 397
MalI GATC 4 cut(s) 108, 139, 165, 176
MboI GATC 4 cut(s) 106, 137, 163, 174
MboII GAAGA 4 cut(s) 425, 467, 530, 593
MfeI CAATTG 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 152, 170, 198
MlyI GAGTC 2 cut(s) 205, 506
MnlI CCTC 9 cut(s) 36, 50, 397, 418, 463, 562, 571, 577, 628
MseI TTAA 2 cut(s) 299, 357
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 91, 521, 542
NdeI CATATG 1 cut(s) 160
NdeII GATC 4 cut(s) 106, 137, 163, 174
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 4 cut(s) 34, 77, 124, 376
NlaIV GGNNCC 2 cut(s) 342, 343
NmuCI GTSAC 2 cut(s) 208, 397
PfeI GAWTC 2 cut(s) 392, 620
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 2 cut(s) 205, 505
PpsI GAGTC 2 cut(s) 205, 505
PpuMI RGGWCCY 1 cut(s) 341
PshBI ATTAAT 1 cut(s) 299
Psp124BI GAGCTC 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 342, 343
PspPI GGNCC 2 cut(s) 341, 352
PspPPI RGGWCCY 1 cut(s) 341
PstI CTGCAG 1 cut(s) 256
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 299, 357
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 4 cut(s) 106, 137, 163, 174
Sau96I GGNCC 2 cut(s) 341, 352
SchI GAGTC 2 cut(s) 205, 506
SduI GDGCHC 1 cut(s) 184
SfaNI GCATC 4 cut(s) 124, 227, 463, 511
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 341
Sse9I AATT 3 cut(s) 152, 170, 198
SspMI CTAG 2 cut(s) 512, 542
SstI GAGCTC 1 cut(s) 184
StyI CCWWGG 2 cut(s) 204, 546
TaaI ACNGT 1 cut(s) 388
TasI AATT 3 cut(s) 152, 170, 198
TfiI GAWTC 2 cut(s) 392, 620
Tru1I TTAA 2 cut(s) 299, 357
Tru9I TTAA 2 cut(s) 299, 357
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 2 cut(s) 208, 397
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 2 cut(s) 208, 397
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 341
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 512, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.