Rorug02G0179600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015521
Physical Location & Seq
Reverse (-)
16636777 .. 16637957
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0179600.1

Sequence Viewer

Length: 522 bp
ATGGAGGGTCAAGAAGAAGCGGCTGCGGCTGCGGCCGCGGCCAATAGGAAGAGAGGCGAGAACGACAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCCGAGATTCGCGAGCCCAACAAGCGCTCCCGGATTTGGCTCGGGTCGTACTCGACTCCCGTCGCCGCCGCCCGGGCCTACGACACCGCCGTCTTCTACTTGAGGGGCCCGTCCGCGAGGCTCAATTTTCCCGAGGCGCTGCCGGTCGTCGGCGGCGGGTGCGGCTGCGACGGCGACATGTCGGCGGCTTCGATAAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGGTCGAGACGGCCATGCGGCAACACAGGGCGGCGGCGGCGGGGGGTCCGATGGAGGAGATGAAGCCGTGTAGGGCGGCTGCGGCGGAGGAGAGCGGGTTCGTGGATCGGGTCGACTTGAACAAGATGCCCGACCCGGAGGAAACGGACGGCGGAGTCTGCGATTGGGGGAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.64

Weight (kDa)

8.35

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 25 - 73 5.5e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20190
malus_domestica MD15G1317800.v1.1
prunus_persica Prupe.6G194000_v2.0.a1 Prupe.6G194000_v2.0.a1
pyrus_communis pycom15g28040
rosa_chinensis RchiOBHm_Chr2g0112261
rosa_laevigata RLG00000017966
rosa_multiflora Rmu_sc0004467.1_g000024 Rmu_sc0011951.1_g000002
rosa_roxburghii Rroxscaffold_2G00131580
rosa_rugosa Rorug02G0179600
rosa_samantha Rh2AG232100 Rh2BG245400 Rh2CG236300 Rh2DG239800
rosa_wichuraiana Rw2G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 200, 497
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 2 cut(s) 339, 456
AccII CGCG 4 cut(s) 38, 123, 227, 344
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 4 cut(s) 33, 39, 111, 354
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 2 cut(s) 74, 161
AfeI AGCGCT 1 cut(s) 137
AfiI CCNNNNNNNGG 4 cut(s) 77, 147, 183, 260
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 463
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 456
Ama87I CYCGRG 3 cut(s) 152, 183, 242
Aor51HI AGCGCT 1 cut(s) 137
AoxI GGCC 7 cut(s) 33, 39, 111, 186, 217, 315, 354
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 5 cut(s) 23, 29, 250, 276, 422
AspLEI GCGC 3 cut(s) 138, 250, 332
AspS9I GGNCC 4 cut(s) 186, 217, 218, 389
AsuC2I CCSGG 4 cut(s) 142, 184, 185, 479
AvaI CYCGRG 3 cut(s) 152, 183, 242
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 129, 221
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 5 cut(s) 10, 16, 237, 263, 409
BccI CCATC 1 cut(s) 388
BceAI ACGGC 6 cut(s) 55, 185, 298, 369, 394, 508
BcnI CCSGG 4 cut(s) 142, 184, 185, 479
BcoDI GTCTC 1 cut(s) 344
BfoI RGCGCY 3 cut(s) 139, 251, 333
BglI GCCNNNNNGGC 1 cut(s) 185
Bme1390I CCNGG 4 cut(s) 142, 184, 185, 479
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 3 cut(s) 152, 183, 242
BmgT120I GGNCC 4 cut(s) 186, 217, 218, 389
BmiI GGNNCC 4 cut(s) 218, 219, 331, 390
BmrFI CCNGG 4 cut(s) 142, 184, 185, 479
BmsI GCATC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 4 cut(s) 142, 184, 185, 479
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 36, 183, 243, 321
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 425, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 147, 183, 260
Bse118I RCCGGY 1 cut(s) 253
BseDI CCNNGG 4 cut(s) 36, 183, 243, 321
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 4 cut(s) 77, 147, 183, 260
BseRI GAGGAG 2 cut(s) 413, 446
BseSI GKGCMC 1 cut(s) 221
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 5 cut(s) 10, 16, 237, 263, 409
Bsh1236I CGCG 4 cut(s) 38, 123, 227, 344
Bsh1285I CGRYCG 3 cut(s) 36, 258, 348
BshFI GGCC 7 cut(s) 35, 41, 113, 188, 219, 317, 356
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 3 cut(s) 36, 258, 348
BsiHKCI CYCGRG 3 cut(s) 152, 183, 242
BsiSI CCGG 4 cut(s) 142, 184, 254, 479
BslI CCNNNNNNNGG 4 cut(s) 77, 147, 183, 260
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsnI GGCC 7 cut(s) 35, 41, 113, 188, 219, 317, 356
BsoBI CYCGRG 3 cut(s) 152, 183, 242
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 129, 221
Bsp143I GATC 1 cut(s) 448
Bsp68I TCGCGA 1 cut(s) 123
BspANI GGCC 7 cut(s) 35, 41, 113, 188, 219, 317, 356
BspFNI CGCG 4 cut(s) 38, 123, 227, 344
BspLI GGNNCC 4 cut(s) 218, 219, 331, 390
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 36, 183, 243, 321
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 4 cut(s) 38, 123, 227, 344
BstH2I RGCGCY 3 cut(s) 139, 251, 333
BstHHI GCGC 3 cut(s) 138, 250, 332
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 1 cut(s) 448
BstMCI CGRYCG 3 cut(s) 36, 258, 348
BstNSI RCATGY 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 4 cut(s) 140, 182, 183, 477
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 4 cut(s) 38, 123, 227, 344
BstV1I GCAGC 5 cut(s) 10, 16, 237, 263, 409
BstV2I GAAGAC 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 7 cut(s) 35, 41, 113, 188, 219, 317, 356
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 93
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 125
CciNI GCGGCCGC 1 cut(s) 33
CfoI GCGC 3 cut(s) 138, 250, 332
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 4 cut(s) 186, 217, 218, 389
Cfr42I CCGCGG 1 cut(s) 39
Cfr9I CCCGGG 1 cut(s) 183
CseI GACGC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 73, 160
CviAII CATG 2 cut(s) 289, 358
CviQI GTAC 2 cut(s) 73, 160
DinI GGCGCC 1 cut(s) 331
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DrdI GACNNNNNNGTC 2 cut(s) 200, 497
DseDI GACNNNNNNGTC 2 cut(s) 200, 497
EaeI YGGCCR 4 cut(s) 33, 39, 111, 354
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 2 cut(s) 443, 510
EclXI CGGCCG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 129, 221
Eco47I GGWCC 1 cut(s) 389
Eco47III AGCGCT 1 cut(s) 137
Eco52I CGGCCG 1 cut(s) 33
Eco88I CYCGRG 3 cut(s) 152, 183, 242
EcoO109I RGGNCCY 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 129, 221
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 2 cut(s) 292, 361
FaiI YATR 2 cut(s) 290, 359
FatI CATG 2 cut(s) 288, 357
FauI CCCGC 3 cut(s) 260, 376, 431
FblI GTMKAC 2 cut(s) 339, 456
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 2 cut(s) 129, 221
GlaI GCGC 3 cut(s) 137, 249, 331
HaeII RGCGCY 3 cut(s) 139, 251, 333
HaeIII GGCC 7 cut(s) 35, 41, 113, 188, 219, 317, 356
HapII CCGG 4 cut(s) 142, 184, 254, 479
HgaI GACGC 1 cut(s) 350
HhaI GCGC 3 cut(s) 138, 250, 332
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 292, 361
Hin6I GCGC 3 cut(s) 136, 248, 330
HinP1I GCGC 3 cut(s) 136, 248, 330
HincII GTYRAC 2 cut(s) 340, 457
HindII GTYRAC 2 cut(s) 340, 457
HinfI GANTC 4 cut(s) 118, 166, 336, 498
HpaII CCGG 4 cut(s) 142, 184, 254, 479
Hpy166II GTNNAC 2 cut(s) 340, 457
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 4 cut(s) 11, 122, 242, 349
Hpy8I GTNNAC 2 cut(s) 340, 457
Hpy99I CGWCG 4 cut(s) 176, 263, 284, 344
HpyAV CCTTC 1 cut(s) 307
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 292, 361
HspAI GCGC 3 cut(s) 136, 248, 330
KasI GGCGCC 1 cut(s) 329
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 155, 197, 267, 346, 355, 492
Lsp1109I GCAGC 5 cut(s) 10, 16, 237, 263, 409
LweI GCATC 1 cut(s) 459
MalI GATC 1 cut(s) 450
MbiI CCGCTC 1 cut(s) 438
MboI GATC 1 cut(s) 448
MboII GAAGA 4 cut(s) 26, 61, 196, 322
MhlI GDGCHC 2 cut(s) 129, 221
MluCI AATT 2 cut(s) 235, 517
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 3 cut(s) 160, 345, 507
MseI TTAA 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 4 cut(s) 142, 184, 254, 479
MspR9I CCNGG 4 cut(s) 142, 184, 185, 479
MvnI CGCG 4 cut(s) 38, 123, 227, 344
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 4 cut(s) 142, 184, 185, 479
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 292, 361
NlaIV GGNNCC 4 cut(s) 218, 219, 331, 390
NmeAIII GCCGAG 1 cut(s) 139
NotI GCGGCCGC 1 cut(s) 33
NruI TCGCGA 1 cut(s) 123
NspI RCATGY 1 cut(s) 292
PciI ACATGT 1 cut(s) 288
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 299, 345
PfeI GAWTC 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 140
PleI GAGTC 3 cut(s) 160, 344, 506
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 3 cut(s) 160, 344, 506
PscI ACATGT 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 170
PspN4I GGNNCC 4 cut(s) 218, 219, 331, 390
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 4 cut(s) 186, 217, 218, 389
PsyI GACNNNGTC 1 cut(s) 344
RruI TCGCGA 1 cut(s) 123
RsaI GTAC 2 cut(s) 74, 161
RsaNI GTAC 2 cut(s) 73, 160
SacII CCGCGG 1 cut(s) 39
SalI GTCGAC 2 cut(s) 338, 455
SaqAI TTAA 1 cut(s) 520
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 4 cut(s) 186, 217, 218, 389
SchI GAGTC 3 cut(s) 160, 345, 507
ScrFI CCNGG 4 cut(s) 142, 184, 185, 479
SduI GDGCHC 2 cut(s) 129, 221
SetI ASST 1 cut(s) 327
SfaNI GCATC 1 cut(s) 459
SfoI GGCGCC 1 cut(s) 331
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SrfI GCCCGGGC 1 cut(s) 185
Sse9I AATT 2 cut(s) 235, 517
SspDI GGCGCC 1 cut(s) 329
StyD4I CCNGG 4 cut(s) 140, 182, 183, 477
TaqI TCGA 5 cut(s) 164, 302, 339, 348, 456
TasI AATT 2 cut(s) 235, 517
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TseI GCWGC 5 cut(s) 23, 29, 250, 276, 422
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 1 cut(s) 503
TspMI CCCGGG 1 cut(s) 183
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 389
XceI RCATGY 1 cut(s) 292
XmaI CCCGGG 1 cut(s) 183
XmiI GTMKAC 2 cut(s) 339, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.