Prupe.6G229400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23288547 .. 23289407
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G229400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 249 bp
ATGAATGCACAAGCCATCAAGGAAGTGAAGGACAAAAATGCACAAAGTCCCAAAGAGACAAAGGTGAACACAGTAGACGTCCGGTCATCGGCGGGGCAGCAAGGCCATGAACAGAGTAATGTGCAGGTGGTTCACCAGCCACATCCCTCTGCGAAAACAAATACCAGCGGCGGTGTCCTGACCGGTGCTGCCGCTGCCGTGGCAACTGCCCTTCAGTCCGCCAAGGATGCTATCTCCAAACACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.49

Weight (kDa)

9.16

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67265
fragaria_vesca FvH4_1g16720
malus_domestica MD02G1178400.v1.1
prunus_persica Prupe.6G229400_v2.0.a1
rosa_laevigata RLG00000017524
rosa_multiflora Rmu_co8325987.1_g000001
rosa_rugosa Rorug02G0136900
rosa_samantha Rh2AG188200 Rh2AG188300 Rh2BG199200 Rh2BG199300 Rh2CG193300 Rh2DG194400 Rh2DG194500
rosa_wichuraiana Rw2G014780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 75
AciI CCGC 5 cut(s) 92, 168, 171, 192, 219
AcuI CTGAAG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 182
AhdI GACNNNNNGTC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 50
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 97, 188, 194
AsiGI ACCGGT 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 76, 125
BbvI GCAGC 3 cut(s) 109, 175, 181
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 5 cut(s) 98, 169, 189, 192, 195
BlsI GCNGC 5 cut(s) 99, 170, 190, 193, 196
BmeRI GACNNNNNGTC 1 cut(s) 82
BmsI GCATC 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 198, 222
BsaWI WCCGGW 2 cut(s) 81, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 198, 222
BseGI GGATG 2 cut(s) 142, 232
BseLI CCNNNNNNNGG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 109, 175, 181
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 105
BshTI ACCGGT 1 cut(s) 182
BsiSI CCGG 2 cut(s) 82, 183
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 105
BspACI CCGC 5 cut(s) 92, 168, 171, 192, 219
BspANI GGCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 198, 222
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 142, 232
BstMAI GTCTC 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 194, 200, 227
BstV1I GCAGC 3 cut(s) 109, 175, 181
BsuRI GGCC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 142, 232
BveI ACCTGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 182
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 1 cut(s) 107
CviJI RGCY 3 cut(s) 14, 105, 139
CviKI_1 RGCY 3 cut(s) 14, 105, 139
DriI GACNNNNNGTC 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 110
FaiI YATR 1 cut(s) 108
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 106
FauI CCCGC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 5 cut(s) 98, 169, 189, 192, 195
FokI GGATG 2 cut(s) 129, 239
Fsp4HI GCNGC 5 cut(s) 98, 169, 189, 192, 195
GluI GCNGC 5 cut(s) 98, 169, 189, 192, 195
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 82, 183
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 110
HpaII CCGG 2 cut(s) 82, 183
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 3 cut(s) 67, 76, 133
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 3 cut(s) 67, 76, 133
HpyAV CCTTC 2 cut(s) 22, 221
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 8, 41, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 200, 227
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 110
LpnPI CCDG 6 cut(s) 95, 110, 149, 178, 191, 196
Lsp1109I GCAGC 3 cut(s) 109, 175, 181
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 78
MnlI CCTC 1 cut(s) 157
MspA1I CMGCKG 2 cut(s) 168, 194
MspI CCGG 2 cut(s) 82, 183
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 194, 200, 227
NlaIII CATG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 5 cut(s) 99, 170, 190, 193, 196
SatI GCNGC 5 cut(s) 98, 169, 189, 192, 195
SetI ASST 3 cut(s) 66, 81, 129
SfaNI GCATC 1 cut(s) 217
SsiI CCGC 5 cut(s) 92, 168, 171, 192, 219
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 81
TauI GCSGC 2 cut(s) 171, 194
TseI GCWGC 3 cut(s) 97, 188, 194
TspDTI ATGAA 2 cut(s) 17, 123
XmiI GTMKAC 1 cut(s) 75
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.